Rh6BG032000

Protein of unknown function (DUF674)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6B
OG0000352
Physical Location & Seq
Forward (+)
4840164 .. 4840472
309 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6BG032000.1

Sequence Viewer

Length: 213 bp
ATGATAATGGACGATCTGAGAGTCAAACCTTTGTCAGTCTTTTCAAATTTGAATTTGCTTAAGAAGTGCATCAACGGCAGTAGTGGTTTTAATAACCTGGAAGAGAAGGTGGTTCATGTTGAAATGGATCAGGTAGAGAAATGGTTGAAAGCATTAATGGAGTCAAACTCAGTTCTTACCGATCTCTTCCTTGGGAAGAAACCAATTGCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF674

Protein Analysis

70

Amino Acids

7.92

Weight (kDa)

6.55

Isoelectric Point (pI)

13.89

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF674 PF05056 1 - 67 4.9e-11 Protein of unknown function (DUF674)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000352)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g24890 FvH4_7g21280 FvH4_7g21300 FvH4_7g21300 FvH4_7g21310 FvH4_7g21330 FvH4_7g21340 FvH4_7g21600 FvH4_7g21610 FvH4_7g21630
malus_domestica MD07G1190400.v1.1 MD07G1190600.v1.1
prunus_persica Prupe.2G228600_v2.0.a1 Prupe.6G198200_v2.0.a1
pyrus_communis pycom07g18010
rosa_chinensis RchiOBHm_Chr1g0365711 RchiOBHm_Chr1g0365721 RchiOBHm_Chr1g0365731 RchiOBHm_Chr1g0365991 RchiOBHm_Chr5g0044511 RchiOBHm_Chr6g0247041 RchiOBHm_Chr6g0247081
rosa_laevigata RLG00000015223 RLG00000027405 RLG00000027406 RLG00000027407 RLG00000027408 RLG00000027409 RLG00000027411 RLG00000027413 RLG00000034277
rosa_multiflora Rmu_co8279495.1_g000001 Rmu_co8358963.1_g000001 Rmu_co8520123.1_g000003 Rmu_sc0002093.1_g000019 Rmu_sc0002093.1_g000024 Rmu_sc0002093.1_g000025 Rmu_sc0002093.1_g000029 Rmu_sc0002476.1_g000002 Rmu_sc0002476.1_g000021 Rmu_sc0003466.1_g000011 Rmu_sc0004288.1_g000006 Rmu_sc0004288.1_g000007 Rmu_sc0004311.1_g000022 Rmu_sc0004311.1_g000023 Rmu_sc0004311.1_g000026 Rmu_sc0004311.1_g000033 Rmu_sc0004577.1_g000008 Rmu_sc0004645.1_g000005 Rmu_sc0004645.1_g000006 Rmu_sc0006406.1_g000011 Rmu_sc0006406.1_g000012 Rmu_sc0009967.1_g000002 Rmu_sc0011598.1_g000003 Rmu_ssc0000151.1_g000015
rosa_roxburghii Rroxscaffold_1G00036500 Rroxscaffold_3G00276050 Rroxscaffold_4G00290950 Rroxscaffold_4G00290960 Rroxscaffold_4G00290970 Rroxscaffold_4G00290980 Rroxscaffold_4G00291000 Rroxscaffold_4G00291030 Rroxscaffold_4G00291060
rosa_rugosa Rorug01G0322900 Rorug01G0323000 Rorug01G0323100 Rorug01G0323200 Rorug01G0323300 Rorug01G0323400 Rorug01G0323500 Rorug01G0323600 Rorug05G0214700 Rorug05G0522100
rosa_samantha Rh1AG332000 Rh1AG332200 Rh1AG332300 Rh1AG334700 Rh1AG334800 Rh1AG335200 Rh1CG309900 Rh1CG310000 Rh1CG310100 Rh1DG325100 Rh1DG325300 Rh1DG325500 Rh5AG299000 Rh5BG306500 Rh5DG315800 Rh6AG037200 Rh6BG031900 Rh6BG032000 Rh6CG032300 Rh6CG032400 Rh6CG033200 Rh6DG030900
rosa_wichuraiana Rw0G001530 Rw1G019070 Rw1G029470 Rw1G029480 Rw1G029490 Rw1G029500 Rw1G029510 Rw1G029700 Rw5G027640 Rw5G027670 Rw6G003160 Rw6G003190

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 135
AcsI RAATTY 2 cut(s) 46, 52
AflII CTTAAG 1 cut(s) 59
AgsI TTSAA 4 cut(s) 45, 52, 122, 148
AjnI CCWGG 1 cut(s) 96
AlwI GGATC 1 cut(s) 135
ApoI RAATTY 2 cut(s) 46, 52
AseI ATTAAT 1 cut(s) 155
BceAI ACGGC 1 cut(s) 91
BciT130I CCWGG 1 cut(s) 98
BfrI CTTAAG 1 cut(s) 59
Bme1390I CCNGG 1 cut(s) 98
BmrFI CCNGG 1 cut(s) 98
BmsI GCATC 1 cut(s) 78
BplI GAGNNNNNCTC 2 cut(s) 152, 184
BsaJI CCNNGG 1 cut(s) 190
BseBI CCWGG 1 cut(s) 98
BseDI CCNNGG 1 cut(s) 190
BseMII CTCAG 2 cut(s) 8, 183
Bsp143I GATC 3 cut(s) 13, 127, 181
BspCNI CTCAG 2 cut(s) 9, 182
BspPI GGATC 1 cut(s) 135
BspTI CTTAAG 1 cut(s) 59
BssECI CCNNGG 1 cut(s) 190
BssMI GATC 3 cut(s) 13, 127, 181
BssT1I CCWWGG 1 cut(s) 190
Bst2UI CCWGG 1 cut(s) 98
Bst6I CTCTTC 2 cut(s) 96, 191
BstAFI CTTAAG 1 cut(s) 59
BstDEI CTNAG 2 cut(s) 17, 169
BstKTI GATC 3 cut(s) 16, 130, 184
BstMBI GATC 3 cut(s) 13, 127, 181
BstMWI GCNNNNNNNGC 1 cut(s) 75
BstNI CCWGG 1 cut(s) 98
BstSCI CCNGG 1 cut(s) 96
CviAII CATG 1 cut(s) 116
DdeI CTNAG 2 cut(s) 17, 169
DpnI GATC 3 cut(s) 15, 129, 183
DpnII GATC 3 cut(s) 13, 127, 181
Eam1104I CTCTTC 2 cut(s) 96, 191
EarI CTCTTC 2 cut(s) 96, 191
Eco130I CCWWGG 1 cut(s) 190
EcoRII CCWGG 1 cut(s) 96
EcoT14I CCWWGG 1 cut(s) 190
ErhI CCWWGG 1 cut(s) 190
FaeI CATG 1 cut(s) 119
FaiI YATR 1 cut(s) 117
FatI CATG 1 cut(s) 115
Hin1II CATG 1 cut(s) 119
HinfI GANTC 2 cut(s) 21, 161
Hpy188I TCNGA 1 cut(s) 18
HpyAV CCTTC 1 cut(s) 100
HpyCH4V TGCA 1 cut(s) 69
HpyF10VI GCNNNNNNNGC 1 cut(s) 75
HpyF3I CTNAG 2 cut(s) 17, 169
Hsp92II CATG 1 cut(s) 119
Kzo9I GATC 3 cut(s) 13, 127, 181
LpnPI CCDG 3 cut(s) 83, 110, 116
LweI GCATC 1 cut(s) 78
MalI GATC 3 cut(s) 15, 129, 183
MboI GATC 3 cut(s) 13, 127, 181
MboII GAAGA 3 cut(s) 113, 178, 208
MfeI CAATTG 1 cut(s) 204
MluCI AATT 3 cut(s) 46, 52, 204
MlyI GAGTC 2 cut(s) 30, 170
MseI TTAA 3 cut(s) 60, 90, 155
MspCI CTTAAG 1 cut(s) 59
MspR9I CCNGG 1 cut(s) 98
MunI CAATTG 1 cut(s) 204
MvaI CCWGG 1 cut(s) 98
MwoI GCNNNNNNNGC 1 cut(s) 75
NdeII GATC 3 cut(s) 13, 127, 181
NlaIII CATG 1 cut(s) 119
PleI GAGTC 2 cut(s) 29, 169
PpsI GAGTC 2 cut(s) 29, 169
PshBI ATTAAT 1 cut(s) 155
Psp6I CCWGG 1 cut(s) 96
PspGI CCWGG 1 cut(s) 96
SaqAI TTAA 3 cut(s) 60, 90, 155
Sau3AI GATC 3 cut(s) 13, 127, 181
SchI GAGTC 2 cut(s) 30, 170
ScrFI CCNGG 1 cut(s) 98
SetI ASST 4 cut(s) 31, 99, 111, 135
SfaNI GCATC 1 cut(s) 78
SgeI CNNG 5 cut(s) 109, 110, 128, 143, 203
SmlI CTYRAG 1 cut(s) 59
SmoI CTYRAG 1 cut(s) 59
Sse9I AATT 3 cut(s) 46, 52, 204
StyD4I CCNGG 1 cut(s) 96
StyI CCWWGG 1 cut(s) 190
TasI AATT 3 cut(s) 46, 52, 204
Tru1I TTAA 3 cut(s) 60, 90, 155
Tru9I TTAA 3 cut(s) 60, 90, 155
TspDTI ATGAA 1 cut(s) 104
Vha464I CTTAAG 1 cut(s) 59
VspI ATTAAT 1 cut(s) 155
XapI RAATTY 2 cut(s) 46, 52
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.