Rmu_ssc0000151.1_g000015

Protein of unknown function (DUF674)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_ssc0000151.1
OG0000352
Physical Location & Seq
Forward (+)
55175 .. 56089
915 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_ssc0000151.1_g000015.1.cds

Sequence Viewer

Length: 915 bp
atggccgactctaaatctactgttagcctgaagctactcatcgattcaaagcgtcaaaaggttctgcttgccgaagcgggtaaggacttcgtggattttctcttctcccttctctctttgcctgttggcactgtcattaggcttctgtcaaaggatggcatggttggtagctttggtaaactgtacgagagtgttgaaaatctaaattttacatatatgcaacgcacactaaacaaggatatcctgctcaaacccaaggcacctgttgctggacctaatatcctcggtttgttggccaacgtcgacaaaccagctgctacaaataaggtgttctacatgtgttcgaataataatagtagtaataataagacgagctcttgctatgtcttttcaaaatctaaaaaaaaaattatcttttcaaaaaagaaaattaataagacgagctcttgctatgtctctgattatgccagtgagcatgaacagtctaactgttccggtagtactgcgattactgcccacctttatgtgactgaagatcctaaccagcaatgtccacagtgcaatcacagcatgtcgtctcaggcaacttacgttggtcaaccaaagaccagggtagcaacttctggcgccggtgcggcaggatatgtcaaaggccttgttacttacatgataatggatgatctggaggtgaagcctatgtccactatttcaagcataactctgctcaacaggttcaatattaaggatattggctccctcgaagagaaggttgttgatcttggcatggatgaggtcagtattcaattgctagctaggctcacttgcttttgtaagaatttgcttttcattggacattgtgttattttcacattgtgcgtacatggactaattgcggtggtatataactggagctag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF674

Protein Analysis

304

Amino Acids

33.32

Weight (kDa)

8.97

Isoelectric Point (pI)

32.89

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000352)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g24890 FvH4_7g21280 FvH4_7g21300 FvH4_7g21300 FvH4_7g21310 FvH4_7g21330 FvH4_7g21340 FvH4_7g21600 FvH4_7g21610 FvH4_7g21630
malus_domestica MD07G1190400.v1.1 MD07G1190600.v1.1
prunus_persica Prupe.2G228600_v2.0.a1 Prupe.6G198200_v2.0.a1
pyrus_communis pycom07g18010
rosa_chinensis RchiOBHm_Chr1g0365711 RchiOBHm_Chr1g0365721 RchiOBHm_Chr1g0365731 RchiOBHm_Chr1g0365991 RchiOBHm_Chr5g0044511 RchiOBHm_Chr6g0247041 RchiOBHm_Chr6g0247081
rosa_laevigata RLG00000015223 RLG00000027405 RLG00000027406 RLG00000027407 RLG00000027408 RLG00000027409 RLG00000027411 RLG00000027413 RLG00000034277
rosa_multiflora Rmu_co8279495.1_g000001 Rmu_co8358963.1_g000001 Rmu_co8520123.1_g000003 Rmu_sc0002093.1_g000019 Rmu_sc0002093.1_g000024 Rmu_sc0002093.1_g000025 Rmu_sc0002093.1_g000029 Rmu_sc0002476.1_g000002 Rmu_sc0002476.1_g000021 Rmu_sc0003466.1_g000011 Rmu_sc0004288.1_g000006 Rmu_sc0004288.1_g000007 Rmu_sc0004311.1_g000022 Rmu_sc0004311.1_g000023 Rmu_sc0004311.1_g000026 Rmu_sc0004311.1_g000033 Rmu_sc0004577.1_g000008 Rmu_sc0004645.1_g000005 Rmu_sc0004645.1_g000006 Rmu_sc0006406.1_g000011 Rmu_sc0006406.1_g000012 Rmu_sc0009967.1_g000002 Rmu_sc0011598.1_g000003 Rmu_ssc0000151.1_g000015
rosa_roxburghii Rroxscaffold_1G00036500 Rroxscaffold_3G00276050 Rroxscaffold_4G00290950 Rroxscaffold_4G00290960 Rroxscaffold_4G00290970 Rroxscaffold_4G00290980 Rroxscaffold_4G00291000 Rroxscaffold_4G00291030 Rroxscaffold_4G00291060
rosa_rugosa Rorug01G0322900 Rorug01G0323000 Rorug01G0323100 Rorug01G0323200 Rorug01G0323300 Rorug01G0323400 Rorug01G0323500 Rorug01G0323600 Rorug05G0214700 Rorug05G0522100
rosa_samantha Rh1AG332000 Rh1AG332200 Rh1AG332300 Rh1AG334700 Rh1AG334800 Rh1AG335200 Rh1CG309900 Rh1CG310000 Rh1CG310100 Rh1DG325100 Rh1DG325300 Rh1DG325500 Rh5AG299000 Rh5BG306500 Rh5DG315800 Rh6AG037200 Rh6BG031900 Rh6BG032000 Rh6CG032300 Rh6CG032400 Rh6CG033200 Rh6DG030900
rosa_wichuraiana Rw0G001530 Rw1G019070 Rw1G029470 Rw1G029480 Rw1G029490 Rw1G029500 Rw1G029510 Rw1G029700 Rw5G027640 Rw5G027670 Rw6G003160 Rw6G003190

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 259, 626
AccI GTMKAC 1 cut(s) 303
AciI CCGC 3 cut(s) 77, 635, 893
AclWI GGATC 1 cut(s) 530
AcoI YGGCCR 2 cut(s) 3, 294
AcsI RAATTY 2 cut(s) 205, 835
AcuI CTGAAG 2 cut(s) 50, 552
AcyI GRCGYC 1 cut(s) 627
AdeI CACNNNGTG 1 cut(s) 873
AfaI GTAC 3 cut(s) 185, 502, 879
AfiI CCNNNNNNNGG 1 cut(s) 269
AflIII ACRYGT 1 cut(s) 336
AgsI TTSAA 7 cut(s) 48, 197, 393, 420, 711, 736, 803
AjnI CCWGG 1 cut(s) 608
AluBI AGCT 7 cut(s) 34, 171, 314, 375, 444, 812, 912
AluI AGCT 7 cut(s) 34, 171, 314, 375, 444, 812, 912
Alw21I GWGCWC 2 cut(s) 377, 446
Alw26I GTCTC 2 cut(s) 460, 582
AlwI GGATC 1 cut(s) 530
AoxI GGCC 3 cut(s) 3, 294, 652
ApeKI GCWGC 1 cut(s) 314
ApoI RAATTY 2 cut(s) 205, 835
AseI ATTAAT 1 cut(s) 432
AspLEI GCGC 1 cut(s) 629
AspS9I GGNCC 1 cut(s) 272
AsuHPI GGTGA 1 cut(s) 700
AsuII TTCGAA 1 cut(s) 344
AsuNHI GCTAGC 1 cut(s) 808
AvaII GGWCC 1 cut(s) 272
BalI TGGCCA 1 cut(s) 296
BanI GGYRCC 2 cut(s) 259, 626
BanII GRGCYC 2 cut(s) 377, 446
Bbv12I GWGCWC 2 cut(s) 377, 446
BbvI GCAGC 1 cut(s) 301
BccI CCATC 1 cut(s) 149
BciT130I CCWGG 1 cut(s) 610
BcoDI GTCTC 2 cut(s) 460, 582
BfaI CTAG 3 cut(s) 809, 813, 913
BfoI RGCGCY 1 cut(s) 630
BglI GCCNNNNNGGC 1 cut(s) 635
BisI GCNGC 2 cut(s) 315, 636
BlsI GCNGC 2 cut(s) 316, 637
BmcAI AGTACT 1 cut(s) 502
Bme1390I CCNGG 1 cut(s) 610
Bme18I GGWCC 1 cut(s) 272
BmgT120I GGNCC 1 cut(s) 272
BmiI GGNNCC 3 cut(s) 261, 628, 754
BmrFI CCNGG 1 cut(s) 610
BmtI GCTAGC 1 cut(s) 812
BpmI CTGGAG 1 cut(s) 704
Bpu14I TTCGAA 1 cut(s) 344
Bsa29I ATCGAT 1 cut(s) 42
BsaHI GRCGYC 1 cut(s) 627
BsaJI CCNNGG 3 cut(s) 255, 283, 609
BsaWI WCCGGW 1 cut(s) 494
Bsc4I CCNNNNNNNGG 1 cut(s) 269
Bse118I RCCGGY 1 cut(s) 629
Bse1I ACTGG 2 cut(s) 468, 911
Bse3DI GCAATG 1 cut(s) 554
BseBI CCWGG 1 cut(s) 610
BseCI ATCGAT 1 cut(s) 42
BseDI CCNNGG 3 cut(s) 255, 283, 609
BseGI GGATG 3 cut(s) 160, 682, 793
BseLI CCNNNNNNNGG 1 cut(s) 269
BseMI GCAATG 1 cut(s) 554
BseMII CTCAG 1 cut(s) 593
BseNI ACTGG 2 cut(s) 468, 911
BseXI GCAGC 1 cut(s) 301
BshFI GGCC 3 cut(s) 5, 296, 654
BshNI GGYRCC 2 cut(s) 259, 626
BshVI ATCGAT 1 cut(s) 42
BsiHKAI GWGCWC 2 cut(s) 377, 446
BsiSI CCGG 2 cut(s) 495, 630
BslI CCNNNNNNNGG 1 cut(s) 269
BsmAI GTCTC 2 cut(s) 460, 582
BsmBI CGTCTC 1 cut(s) 582
BsnI GGCC 3 cut(s) 5, 296, 654
Bsp119I TTCGAA 1 cut(s) 344
Bsp1286I GDGCHC 2 cut(s) 377, 446
Bsp143I GATC 3 cut(s) 535, 679, 775
BspACI CCGC 3 cut(s) 77, 635, 893
BspANI GGCC 3 cut(s) 5, 296, 654
BspCNI CTCAG 1 cut(s) 592
BspDI ATCGAT 1 cut(s) 42
BspLI GGNNCC 3 cut(s) 261, 628, 754
BspOI GCTAGC 1 cut(s) 812
BspPI GGATC 1 cut(s) 530
BspT104I TTCGAA 1 cut(s) 344
BspT107I GGYRCC 2 cut(s) 259, 626
BsrDI GCAATG 1 cut(s) 554
BsrFI RCCGGY 1 cut(s) 629
BsrI ACTGG 2 cut(s) 468, 911
BssAI RCCGGY 1 cut(s) 629
BssECI CCNNGG 3 cut(s) 255, 283, 609
BssMI GATC 3 cut(s) 535, 679, 775
BssNI GRCGYC 1 cut(s) 627
BssT1I CCWWGG 1 cut(s) 255
Bst2UI CCWGG 1 cut(s) 610
Bst4CI ACNGT 6 cut(s) 22, 133, 183, 483, 491, 558
Bst6I CTCTTC 2 cut(s) 107, 756
BstACI GRCGYC 1 cut(s) 627
BstAPI GCANNNNNTGC 1 cut(s) 266
BstBI TTCGAA 1 cut(s) 344
BstC8I GCNNGC 2 cut(s) 69, 810
BstDEI CTNAG 1 cut(s) 579
BstF5I GGATG 3 cut(s) 160, 682, 793
BstH2I RGCGCY 1 cut(s) 630
BstHHI GCGC 1 cut(s) 629
BstKTI GATC 3 cut(s) 538, 682, 778
BstMAI GTCTC 2 cut(s) 460, 582
BstMBI GATC 3 cut(s) 535, 679, 775
BstMWI GCNNNNNNNGC 5 cut(s) 266, 512, 567, 635, 814
BstNI CCWGG 1 cut(s) 610
BstNSI RCATGY 2 cut(s) 340, 574
BstSCI CCNGG 1 cut(s) 608
BstV1I GCAGC 1 cut(s) 301
BstX2I RGATCY 1 cut(s) 535
BstYI RGATCY 1 cut(s) 535
Bsu15I ATCGAT 1 cut(s) 42
BsuRI GGCC 3 cut(s) 5, 296, 654
BsuTUI ATCGAT 1 cut(s) 42
BtsCI GGATG 3 cut(s) 160, 682, 793
BtsIMutI CAGTG 3 cut(s) 129, 475, 563
Cac8I GCNNGC 2 cut(s) 69, 810
CfoI GCGC 1 cut(s) 629
Cfr10I RCCGGY 1 cut(s) 629
Cfr13I GGNCC 1 cut(s) 272
ClaI ATCGAT 1 cut(s) 42
CseI GACGC 1 cut(s) 41
Csp6I GTAC 3 cut(s) 184, 501, 878
CviAII CATG 7 cut(s) 160, 337, 476, 571, 667, 784, 881
CviQI GTAC 3 cut(s) 184, 501, 878
DdeI CTNAG 1 cut(s) 579
DinI GGCGCC 1 cut(s) 628
DpnI GATC 3 cut(s) 537, 681, 777
DpnII GATC 3 cut(s) 535, 679, 775
DraIII CACNNNGTG 1 cut(s) 873
EaeI YGGCCR 2 cut(s) 3, 294
Eam1104I CTCTTC 2 cut(s) 107, 756
EarI CTCTTC 2 cut(s) 107, 756
Ecl136II GAGCTC 2 cut(s) 375, 444
Eco130I CCWWGG 1 cut(s) 255
Eco147I AGGCCT 1 cut(s) 654
Eco24I GRGCYC 2 cut(s) 377, 446
Eco32I GATATC 1 cut(s) 241
Eco47I GGWCC 1 cut(s) 272
Eco53kI GAGCTC 2 cut(s) 375, 444
Eco57I CTGAAG 2 cut(s) 50, 552
EcoICRI GAGCTC 2 cut(s) 375, 444
EcoRII CCWGG 1 cut(s) 608
EcoRV GATATC 1 cut(s) 241
EcoT14I CCWWGG 1 cut(s) 255
EcoT38I GRGCYC 2 cut(s) 377, 446
EgeI GGCGCC 1 cut(s) 628
EheI GGCGCC 1 cut(s) 628
ErhI CCWWGG 1 cut(s) 255
Esp3I CGTCTC 1 cut(s) 582
FaeI CATG 7 cut(s) 163, 340, 479, 574, 670, 787, 884
FatI CATG 7 cut(s) 159, 336, 475, 570, 666, 783, 880
FauI CCCGC 1 cut(s) 70
FblI GTMKAC 1 cut(s) 303
Fnu4HI GCNGC 2 cut(s) 315, 636
FokI GGATG 3 cut(s) 167, 689, 800
FriOI GRGCYC 2 cut(s) 377, 446
Fsp4HI GCNGC 2 cut(s) 315, 636
FspBI CTAG 3 cut(s) 809, 813, 913
GlaI GCGC 1 cut(s) 628
GluI GCNGC 2 cut(s) 315, 636
GsuI CTGGAG 1 cut(s) 704
HaeII RGCGCY 1 cut(s) 630
HaeIII GGCC 3 cut(s) 5, 296, 654
HapII CCGG 2 cut(s) 495, 630
HgaI GACGC 1 cut(s) 41
HhaI GCGC 1 cut(s) 629
Hin1I GRCGYC 1 cut(s) 627
Hin1II CATG 7 cut(s) 163, 340, 479, 574, 670, 787, 884
Hin6I GCGC 1 cut(s) 627
HinP1I GCGC 1 cut(s) 627
HincII GTYRAC 2 cut(s) 304, 599
HindII GTYRAC 2 cut(s) 304, 599
HinfI GANTC 2 cut(s) 8, 44
HpaII CCGG 2 cut(s) 495, 630
HphI GGTGA 1 cut(s) 700
Hpy166II GTNNAC 5 cut(s) 179, 304, 554, 599, 702
Hpy188I TCNGA 1 cut(s) 460
Hpy188III TCNNGA 1 cut(s) 683
Hpy8I GTNNAC 5 cut(s) 179, 304, 554, 599, 702
Hpy99I CGWCG 1 cut(s) 305
HpyAV CCTTC 2 cut(s) 119, 760
HpyCH4III ACNGT 6 cut(s) 22, 133, 183, 483, 491, 558
HpyCH4IV ACGT 2 cut(s) 300, 591
HpyCH4V TGCA 2 cut(s) 220, 561
HpyF10VI GCNNNNNNNGC 5 cut(s) 266, 512, 567, 635, 814
HpyF3I CTNAG 1 cut(s) 579
HpySE526I ACGT 2 cut(s) 300, 591
Hsp92I GRCGYC 1 cut(s) 627
Hsp92II CATG 7 cut(s) 163, 340, 479, 574, 670, 787, 884
HspAI GCGC 1 cut(s) 627
KasI GGCGCC 1 cut(s) 626
Kzo9I GATC 3 cut(s) 535, 679, 775
LmnI GCTCC 2 cut(s) 758, 909
Lsp1109I GCAGC 1 cut(s) 301
MaeI CTAG 3 cut(s) 809, 813, 913
MaeII ACGT 2 cut(s) 300, 591
MaeIII GTNAC 2 cut(s) 526, 658
MalI GATC 3 cut(s) 537, 681, 777
MboI GATC 3 cut(s) 535, 679, 775
MboII GAAGA 3 cut(s) 94, 545, 773
MfeI CAATTG 1 cut(s) 803
MflI RGATCY 1 cut(s) 535
MhlI GDGCHC 2 cut(s) 377, 446
MlsI TGGCCA 1 cut(s) 296
MluCI AATT 6 cut(s) 205, 408, 429, 803, 835, 888
MluNI TGGCCA 1 cut(s) 296
Mly113I GGCGCC 1 cut(s) 627
MlyI GAGTC 1 cut(s) 2
MnlI CCTC 4 cut(s) 293, 679, 767, 784
Mox20I TGGCCA 1 cut(s) 296
MscI TGGCCA 1 cut(s) 296
MseI TTAA 2 cut(s) 432, 741
MslI CAYNNNNRTG 2 cut(s) 522, 671
Msp20I TGGCCA 1 cut(s) 296
MspA1I CMGCKG 1 cut(s) 314
MspI CCGG 2 cut(s) 495, 630
MspR9I CCNGG 1 cut(s) 610
MunI CAATTG 1 cut(s) 803
MvaI CCWGG 1 cut(s) 610
MwoI GCNNNNNNNGC 5 cut(s) 266, 512, 567, 635, 814
NarI GGCGCC 1 cut(s) 627
NdeII GATC 3 cut(s) 535, 679, 775
NheI GCTAGC 1 cut(s) 808
NlaIII CATG 7 cut(s) 163, 340, 479, 574, 670, 787, 884
NlaIV GGNNCC 3 cut(s) 261, 628, 754
NmuCI GTSAC 1 cut(s) 526
NspI RCATGY 2 cut(s) 340, 574
NspV TTCGAA 1 cut(s) 344
PceI AGGCCT 1 cut(s) 654
PciI ACATGT 1 cut(s) 336
PfeI GAWTC 1 cut(s) 44
PkrI GCNGC 2 cut(s) 316, 637
PleI GAGTC 1 cut(s) 2
PluTI GGCGCC 1 cut(s) 630
PpsI GAGTC 1 cut(s) 2
PscI ACATGT 1 cut(s) 336
PshBI ATTAAT 1 cut(s) 432
Psp124BI GAGCTC 2 cut(s) 377, 446
Psp6I CCWGG 1 cut(s) 608
PspGI CCWGG 1 cut(s) 608
PspN4I GGNNCC 3 cut(s) 261, 628, 754
PspPI GGNCC 1 cut(s) 272
PsuI RGATCY 1 cut(s) 535
PvuII CAGCTG 1 cut(s) 314
RsaI GTAC 3 cut(s) 185, 502, 879
RsaNI GTAC 3 cut(s) 184, 501, 878
RseI CAYNNNNRTG 2 cut(s) 522, 671
SacI GAGCTC 2 cut(s) 377, 446
SalI GTCGAC 1 cut(s) 302
SaqAI TTAA 2 cut(s) 432, 741
SatI GCNGC 2 cut(s) 315, 636
Sau3AI GATC 3 cut(s) 535, 679, 775
Sau96I GGNCC 1 cut(s) 272
ScaI AGTACT 1 cut(s) 502
SchI GAGTC 1 cut(s) 2
ScrFI CCNGG 1 cut(s) 610
SduI GDGCHC 2 cut(s) 377, 446
SfoI GGCGCC 1 cut(s) 628
SfuI TTCGAA 1 cut(s) 344
SgrAI CRCCGGYG 1 cut(s) 629
SinI GGWCC 1 cut(s) 272
SmiMI CAYNNNNRTG 2 cut(s) 522, 671
Sse9I AATT 6 cut(s) 205, 408, 429, 803, 835, 888
SseBI AGGCCT 1 cut(s) 654
SsiI CCGC 3 cut(s) 77, 635, 893
SspDI GGCGCC 1 cut(s) 626
SspI AATATT 1 cut(s) 739
SspMI CTAG 3 cut(s) 809, 813, 913
SstI GAGCTC 2 cut(s) 377, 446
StuI AGGCCT 1 cut(s) 654
StyD4I CCNGG 1 cut(s) 608
StyI CCWWGG 1 cut(s) 255
TaaI ACNGT 6 cut(s) 22, 133, 183, 483, 491, 558
TaiI ACGT 2 cut(s) 303, 594
TaqI TCGA 4 cut(s) 42, 303, 344, 759
TasI AATT 6 cut(s) 205, 408, 429, 803, 835, 888
TatI WGTACW 1 cut(s) 500
TauI GCSGC 1 cut(s) 638
TfiI GAWTC 1 cut(s) 44
Tru1I TTAA 2 cut(s) 432, 741
Tru9I TTAA 2 cut(s) 432, 741
TscAI CASTG 3 cut(s) 136, 475, 563
TseFI GTSAC 1 cut(s) 526
TseI GCWGC 1 cut(s) 314
Tsp45I GTSAC 1 cut(s) 526
TspDTI ATGAA 2 cut(s) 492, 835
TspRI CASTG 3 cut(s) 136, 475, 563
VpaK11BI GGWCC 1 cut(s) 272
VspI ATTAAT 1 cut(s) 432
XapI RAATTY 2 cut(s) 205, 835
XceI RCATGY 2 cut(s) 340, 574
XmiI GTMKAC 1 cut(s) 303
XspI CTAG 3 cut(s) 809, 813, 913
ZrmI AGTACT 1 cut(s) 502
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.