FvH4_7g21630

Protein of unknown function (DUF674)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb7
OG0000352
Physical Location & Seq
Forward (+)
17249586 .. 17250468
883 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_7g21630.t1

Sequence Viewer

Length: 531 bp
ATGGCAACCTCTTCCAGCTCCACAAGCAAGAAAAGGTTCTCTTTGCCGAAGCTGGTAAAGACTTTGTCGATTTTCTCCACTCTGCTCTCTTTGCCTCTAGGCACAGTCATCAGGCTTCTCGACAAGGATGGCATGGTGGGTGGCTTTGGAAAACTCTATCAGAGTGTAAAAAACCTACATGATACATACATGCAACCCAACGGTAACAAGGACGTGCTTCTTAAACCTAAGGCACCACTTGCACTTGGATCCAACATCCTGAAGCTGAGCAACATTGAATTAAGCGCTCGGAAAGCGATCTACATGTGTGCGAGTGGGAAGATCACAAGTGAAGCCTATGTCCACCATCTCCACTTCTCCAGCATAACTCTTCTCAACAGGTTTAATGTTAAGGGTGTGGGGGTTCTTCAAGAAAAGGCTGTTGATCTTGGCATGCAGGAGGGTGTGAAACTGGTGAAGGCGTCTCTTCAGTCGAAGTCGGTTCTGACGAGTGTGTTCATTGGGAAGAAAGCTGCTACGTCACCTGCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF674

Protein Analysis

177

Amino Acids

18.92

Weight (kDa)

10.07

Isoelectric Point (pI)

39.47

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF674 PF05056 24 - 107 3.1e-14 Protein of unknown function (DUF674)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000352)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g24890 FvH4_7g21280 FvH4_7g21300 FvH4_7g21300 FvH4_7g21310 FvH4_7g21330 FvH4_7g21340 FvH4_7g21600 FvH4_7g21610 FvH4_7g21630
malus_domestica MD07G1190400.v1.1 MD07G1190600.v1.1
prunus_persica Prupe.2G228600_v2.0.a1 Prupe.6G198200_v2.0.a1
pyrus_communis pycom07g18010
rosa_chinensis RchiOBHm_Chr1g0365711 RchiOBHm_Chr1g0365721 RchiOBHm_Chr1g0365731 RchiOBHm_Chr1g0365991 RchiOBHm_Chr5g0044511 RchiOBHm_Chr6g0247041 RchiOBHm_Chr6g0247081
rosa_laevigata RLG00000015223 RLG00000027405 RLG00000027406 RLG00000027407 RLG00000027408 RLG00000027409 RLG00000027411 RLG00000027413 RLG00000034277
rosa_multiflora Rmu_co8279495.1_g000001 Rmu_co8358963.1_g000001 Rmu_co8520123.1_g000003 Rmu_sc0002093.1_g000019 Rmu_sc0002093.1_g000024 Rmu_sc0002093.1_g000025 Rmu_sc0002093.1_g000029 Rmu_sc0002476.1_g000002 Rmu_sc0002476.1_g000021 Rmu_sc0003466.1_g000011 Rmu_sc0004288.1_g000006 Rmu_sc0004288.1_g000007 Rmu_sc0004311.1_g000022 Rmu_sc0004311.1_g000023 Rmu_sc0004311.1_g000026 Rmu_sc0004311.1_g000033 Rmu_sc0004577.1_g000008 Rmu_sc0004645.1_g000005 Rmu_sc0004645.1_g000006 Rmu_sc0006406.1_g000011 Rmu_sc0006406.1_g000012 Rmu_sc0009967.1_g000002 Rmu_sc0011598.1_g000003 Rmu_ssc0000151.1_g000015
rosa_roxburghii Rroxscaffold_1G00036500 Rroxscaffold_3G00276050 Rroxscaffold_4G00290950 Rroxscaffold_4G00290960 Rroxscaffold_4G00290970 Rroxscaffold_4G00290980 Rroxscaffold_4G00291000 Rroxscaffold_4G00291030 Rroxscaffold_4G00291060
rosa_rugosa Rorug01G0322900 Rorug01G0323000 Rorug01G0323100 Rorug01G0323200 Rorug01G0323300 Rorug01G0323400 Rorug01G0323500 Rorug01G0323600 Rorug05G0214700 Rorug05G0522100
rosa_samantha Rh1AG332000 Rh1AG332200 Rh1AG332300 Rh1AG334700 Rh1AG334800 Rh1AG335200 Rh1CG309900 Rh1CG310000 Rh1CG310100 Rh1DG325100 Rh1DG325300 Rh1DG325500 Rh5AG299000 Rh5BG306500 Rh5DG315800 Rh6AG037200 Rh6BG031900 Rh6BG032000 Rh6CG032300 Rh6CG032400 Rh6CG033200 Rh6DG030900
rosa_wichuraiana Rw0G001530 Rw1G019070 Rw1G029470 Rw1G029480 Rw1G029490 Rw1G029500 Rw1G029510 Rw1G029700 Rw5G027640 Rw5G027670 Rw6G003160 Rw6G003190

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 232
AclWI GGATC 2 cut(s) 243, 256
AcuI CTGAAG 2 cut(s) 281, 452
AcyI GRCGYC 1 cut(s) 461
AfeI AGCGCT 1 cut(s) 286
AflIII ACRYGT 1 cut(s) 303
AgsI TTSAA 2 cut(s) 278, 410
AjiI CACGTC 1 cut(s) 214
AluBI AGCT 4 cut(s) 18, 52, 265, 512
AluI AGCT 4 cut(s) 18, 52, 265, 512
Alw26I GTCTC 1 cut(s) 468
AlwI GGATC 2 cut(s) 243, 256
Aor51HI AGCGCT 1 cut(s) 286
ApeKI GCWGC 1 cut(s) 512
Asp700I GAANNNNTTC 1 cut(s) 35
AspLEI GCGC 1 cut(s) 287
AsuHPI GGTGA 2 cut(s) 466, 513
AxyI CCTNAGG 1 cut(s) 228
BamHI GGATCC 1 cut(s) 248
BanI GGYRCC 1 cut(s) 232
BbvI GCAGC 1 cut(s) 499
BccI CCATC 2 cut(s) 122, 354
BcoDI GTCTC 1 cut(s) 468
BfaI CTAG 1 cut(s) 98
BfoI RGCGCY 1 cut(s) 288
BisI GCNGC 1 cut(s) 513
BlpI GCTNAGC 1 cut(s) 266
BlsI GCNGC 1 cut(s) 514
BmgBI CACGTC 1 cut(s) 214
BmiI GGNNCC 2 cut(s) 234, 250
BpmI CTGGAG 1 cut(s) 343
Bpu1102I GCTNAGC 1 cut(s) 266
BsaHI GRCGYC 1 cut(s) 461
Bse1I ACTGG 1 cut(s) 456
Bse21I CCTNAGG 1 cut(s) 228
BseGI GGATG 2 cut(s) 133, 255
BseMII CTCAG 1 cut(s) 257
BseNI ACTGG 1 cut(s) 456
BseXI GCAGC 1 cut(s) 499
BshNI GGYRCC 1 cut(s) 232
BsmAI GTCTC 1 cut(s) 468
BsmBI CGTCTC 1 cut(s) 468
Bsp143I GATC 4 cut(s) 248, 297, 321, 424
Bsp1720I GCTNAGC 1 cut(s) 266
BspCNI CTCAG 1 cut(s) 258
BspLI GGNNCC 2 cut(s) 234, 250
BspPI GGATC 2 cut(s) 243, 256
BspT107I GGYRCC 1 cut(s) 232
BsrI ACTGG 1 cut(s) 456
BssMI GATC 4 cut(s) 248, 297, 321, 424
BssNI GRCGYC 1 cut(s) 461
Bst4CI ACNGT 2 cut(s) 106, 203
Bst6I CTCTTC 3 cut(s) 16, 375, 471
BstACI GRCGYC 1 cut(s) 461
BstAPI GCANNNNNTGC 1 cut(s) 239
BstC8I GCNNGC 1 cut(s) 434
BstDEI CTNAG 2 cut(s) 228, 266
BstF5I GGATG 2 cut(s) 133, 255
BstH2I RGCGCY 1 cut(s) 288
BstHHI GCGC 1 cut(s) 287
BstKTI GATC 4 cut(s) 251, 300, 324, 427
BstMAI GTCTC 1 cut(s) 468
BstMBI GATC 4 cut(s) 248, 297, 321, 424
BstMWI GCNNNNNNNGC 4 cut(s) 24, 91, 239, 293
BstNSI RCATGY 3 cut(s) 193, 307, 436
BstV1I GCAGC 1 cut(s) 499
BstX2I RGATCY 1 cut(s) 248
BstYI RGATCY 1 cut(s) 248
Bsu36I CCTNAGG 1 cut(s) 228
BtrI CACGTC 1 cut(s) 214
BtsCI GGATG 2 cut(s) 133, 255
Cac8I GCNNGC 1 cut(s) 434
CfoI GCGC 1 cut(s) 287
CseI GACGC 1 cut(s) 450
CviAII CATG 6 cut(s) 133, 179, 190, 304, 433, 528
CviJI RGCY 8 cut(s) 18, 52, 115, 144, 265, 335, 419, 512
CviKI_1 RGCY 8 cut(s) 18, 52, 115, 144, 265, 335, 419, 512
DdeI CTNAG 2 cut(s) 228, 266
DpnI GATC 4 cut(s) 250, 299, 323, 426
DpnII GATC 4 cut(s) 248, 297, 321, 424
Eam1104I CTCTTC 3 cut(s) 16, 375, 471
EarI CTCTTC 3 cut(s) 16, 375, 471
Eco47III AGCGCT 1 cut(s) 286
Eco57I CTGAAG 2 cut(s) 281, 452
Eco81I CCTNAGG 1 cut(s) 228
Esp3I CGTCTC 1 cut(s) 468
FaeI CATG 6 cut(s) 136, 182, 193, 307, 436, 531
FaiI YATR 9 cut(s) 134, 180, 187, 191, 305, 339, 365, 434, 529
FalI AAGNNNNNCTT 2 cut(s) 25, 57
FatI CATG 6 cut(s) 132, 178, 189, 303, 432, 527
Fnu4HI GCNGC 1 cut(s) 513
FokI GGATG 2 cut(s) 140, 242
Fsp4HI GCNGC 1 cut(s) 513
FspBI CTAG 1 cut(s) 98
GlaI GCGC 1 cut(s) 286
GluI GCNGC 1 cut(s) 513
GsuI CTGGAG 1 cut(s) 343
HaeII RGCGCY 1 cut(s) 288
HgaI GACGC 1 cut(s) 450
HhaI GCGC 1 cut(s) 287
Hin1I GRCGYC 1 cut(s) 461
Hin1II CATG 6 cut(s) 136, 182, 193, 307, 436, 531
Hin6I GCGC 1 cut(s) 285
HinP1I GCGC 1 cut(s) 285
HphI GGTGA 2 cut(s) 466, 513
Hpy166II GTNNAC 1 cut(s) 343
Hpy188I TCNGA 3 cut(s) 162, 291, 486
Hpy188III TCNNGA 3 cut(s) 119, 259, 410
Hpy8I GTNNAC 1 cut(s) 343
HpyAV CCTTC 1 cut(s) 451
HpyCH4III ACNGT 2 cut(s) 106, 203
HpyCH4IV ACGT 2 cut(s) 213, 518
HpyCH4V TGCA 4 cut(s) 193, 242, 436, 527
HpyF10VI GCNNNNNNNGC 4 cut(s) 24, 91, 239, 293
HpyF3I CTNAG 2 cut(s) 228, 266
HpySE526I ACGT 2 cut(s) 213, 518
Hsp92I GRCGYC 1 cut(s) 461
Hsp92II CATG 6 cut(s) 136, 182, 193, 307, 436, 531
HspAI GCGC 1 cut(s) 285
Kzo9I GATC 4 cut(s) 248, 297, 321, 424
LmnI GCTCC 1 cut(s) 23
LpnPI CCDG 8 cut(s) 28, 38, 97, 272, 364, 373, 422, 437
Lsp1109I GCAGC 1 cut(s) 499
MaeI CTAG 1 cut(s) 98
MaeII ACGT 2 cut(s) 213, 518
MaeIII GTNAC 2 cut(s) 203, 519
MalI GATC 4 cut(s) 250, 299, 323, 426
MboI GATC 4 cut(s) 248, 297, 321, 424
MboII GAAGA 6 cut(s) 3, 331, 362, 398, 458, 517
MflI RGATCY 1 cut(s) 248
MluCI AATT 1 cut(s) 278
MmeI TCCRAC 1 cut(s) 276
MnlI CCTC 3 cut(s) 19, 105, 433
MroXI GAANNNNTTC 1 cut(s) 35
MseI TTAA 4 cut(s) 222, 281, 384, 390
MslI CAYNNNNRTG 1 cut(s) 526
MwoI GCNNNNNNNGC 4 cut(s) 24, 91, 239, 293
NdeII GATC 4 cut(s) 248, 297, 321, 424
NlaIII CATG 6 cut(s) 136, 182, 193, 307, 436, 531
NlaIV GGNNCC 2 cut(s) 234, 250
NmuCI GTSAC 1 cut(s) 519
NspI RCATGY 3 cut(s) 193, 307, 436
PaeI GCATGC 1 cut(s) 436
PciI ACATGT 1 cut(s) 303
PcsI WCGNNNNNNNCGW 1 cut(s) 485
PdmI GAANNNNTTC 1 cut(s) 35
PflFI GACNNNGTC 1 cut(s) 64
PkrI GCNGC 1 cut(s) 514
PscI ACATGT 1 cut(s) 303
PspN4I GGNNCC 2 cut(s) 234, 250
PsuI RGATCY 1 cut(s) 248
PsyI GACNNNGTC 1 cut(s) 64
RseI CAYNNNNRTG 1 cut(s) 526
SaqAI TTAA 4 cut(s) 222, 281, 384, 390
SatI GCNGC 1 cut(s) 513
Sau3AI GATC 4 cut(s) 248, 297, 321, 424
SmiMI CAYNNNNRTG 1 cut(s) 526
SphI GCATGC 1 cut(s) 436
Sse9I AATT 1 cut(s) 278
SspMI CTAG 1 cut(s) 98
TaaI ACNGT 2 cut(s) 106, 203
TaiI ACGT 2 cut(s) 216, 521
TaqI TCGA 3 cut(s) 68, 120, 473
TasI AATT 1 cut(s) 278
Tru1I TTAA 4 cut(s) 222, 281, 384, 390
Tru9I TTAA 4 cut(s) 222, 281, 384, 390
TseFI GTSAC 1 cut(s) 519
TseI GCWGC 1 cut(s) 512
Tsp45I GTSAC 1 cut(s) 519
TspDTI ATGAA 1 cut(s) 487
Tth111I GACNNNGTC 1 cut(s) 64
XceI RCATGY 3 cut(s) 193, 307, 436
XmnI GAANNNNTTC 1 cut(s) 35
XspI CTAG 1 cut(s) 98
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.