Rmu_sc0002093.1_g000025

Protein of unknown function (DUF674)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0002093.1
OG0000352
Physical Location & Seq
Reverse (-)
92011 .. 95615
3605 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0002093.1_g000025.1.cds

Sequence Viewer

Length: 957 bp
atggcaactattagcttgaagctactcgttgacacaaagcagaaaaaagttctgttcgccgaagctggtaaggaatttgttgacttcctcttcacccttctttcttttcccgccggttctatcatcaggcttctctcaaaggacatggttggaagcctaggtagactgtacgaaagcgttgaaaattttagtgatacatatatgcaacccaatctgaacaaagacatcatcctgaaacctaaagaacctggtaccgtgcctaacaatctagggttgttaaccaatgtcgaaaaaactgaaaggaagtcgacttacatttgttccaatacgggaaacgtagtttggcgtggcagctacagtggctatagcgatatccacccgtattgttctgatgatcctaaagccaaatgtccaaagtgcagtcacaacatgagtatttcaacgacttatgttgctccaccgactgctcctgcggaagaagcttccgccgcctctaaaaggatagggtttgtcaaaccggttgttacatacatgataatggatgacttggaagtgaagcctatgtctaccatctcgaccattgctctgctcaacagcctcaatgttagagattttggtgcccttgaagagaaggttgttaatctaggcatggatgaggtgcgggtggagctgcataagtcagctgggtgcataggtacagttgcagtgcaccttggagtcttggacaatggctctggggcgaacaaccacataggtatagaacatatctggttcgcagggattgggctgaaggcaggaactgggcctatttggcccaaatatgaaaatgggggctatatgctgcaaactctcaagaagagcccgaggagcaacctgatactaaggttgtcggctacagaggaggctgcatatggtgctggttccaaccctacggggaagggactcgcgctgttgtaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF674

Protein Analysis

318

Amino Acids

34.39

Weight (kDa)

8.15

Isoelectric Point (pI)

28.86

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000352)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g24890 FvH4_7g21280 FvH4_7g21300 FvH4_7g21300 FvH4_7g21310 FvH4_7g21330 FvH4_7g21340 FvH4_7g21600 FvH4_7g21610 FvH4_7g21630
malus_domestica MD07G1190400.v1.1 MD07G1190600.v1.1
prunus_persica Prupe.2G228600_v2.0.a1 Prupe.6G198200_v2.0.a1
pyrus_communis pycom07g18010
rosa_chinensis RchiOBHm_Chr1g0365711 RchiOBHm_Chr1g0365721 RchiOBHm_Chr1g0365731 RchiOBHm_Chr1g0365991 RchiOBHm_Chr5g0044511 RchiOBHm_Chr6g0247041 RchiOBHm_Chr6g0247081
rosa_laevigata RLG00000015223 RLG00000027405 RLG00000027406 RLG00000027407 RLG00000027408 RLG00000027409 RLG00000027411 RLG00000027413 RLG00000034277
rosa_multiflora Rmu_co8279495.1_g000001 Rmu_co8358963.1_g000001 Rmu_co8520123.1_g000003 Rmu_sc0002093.1_g000019 Rmu_sc0002093.1_g000024 Rmu_sc0002093.1_g000025 Rmu_sc0002093.1_g000029 Rmu_sc0002476.1_g000002 Rmu_sc0002476.1_g000021 Rmu_sc0003466.1_g000011 Rmu_sc0004288.1_g000006 Rmu_sc0004288.1_g000007 Rmu_sc0004311.1_g000022 Rmu_sc0004311.1_g000023 Rmu_sc0004311.1_g000026 Rmu_sc0004311.1_g000033 Rmu_sc0004577.1_g000008 Rmu_sc0004645.1_g000005 Rmu_sc0004645.1_g000006 Rmu_sc0006406.1_g000011 Rmu_sc0006406.1_g000012 Rmu_sc0009967.1_g000002 Rmu_sc0011598.1_g000003 Rmu_ssc0000151.1_g000015
rosa_roxburghii Rroxscaffold_1G00036500 Rroxscaffold_3G00276050 Rroxscaffold_4G00290950 Rroxscaffold_4G00290960 Rroxscaffold_4G00290970 Rroxscaffold_4G00290980 Rroxscaffold_4G00291000 Rroxscaffold_4G00291030 Rroxscaffold_4G00291060
rosa_rugosa Rorug01G0322900 Rorug01G0323000 Rorug01G0323100 Rorug01G0323200 Rorug01G0323300 Rorug01G0323400 Rorug01G0323500 Rorug01G0323600 Rorug05G0214700 Rorug05G0522100
rosa_samantha Rh1AG332000 Rh1AG332200 Rh1AG332300 Rh1AG334700 Rh1AG334800 Rh1AG335200 Rh1CG309900 Rh1CG310000 Rh1CG310100 Rh1DG325100 Rh1DG325300 Rh1DG325500 Rh5AG299000 Rh5BG306500 Rh5DG315800 Rh6AG037200 Rh6BG031900 Rh6BG032000 Rh6CG032300 Rh6CG032400 Rh6CG033200 Rh6DG030900
rosa_wichuraiana Rw0G001530 Rw1G019070 Rw1G029470 Rw1G029480 Rw1G029490 Rw1G029500 Rw1G029510 Rw1G029700 Rw5G027640 Rw5G027670 Rw6G003160 Rw6G003190

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 251
AccB1I GGYRCC 2 cut(s) 251, 617
AccI GTMKAC 3 cut(s) 163, 308, 566
AccII CGCG 1 cut(s) 947
AciI CCGC 5 cut(s) 111, 473, 486, 489, 661
AclWI GGATC 1 cut(s) 389
AcsI RAATTY 2 cut(s) 74, 184
AcuI CTGAAG 1 cut(s) 809
AfaI GTAC 3 cut(s) 170, 253, 697
AfiI CCNNNNNNNGG 1 cut(s) 498
AgeI ACCGGT 1 cut(s) 517
AgsI TTSAA 4 cut(s) 19, 182, 441, 626
AjnI CCWGG 1 cut(s) 247
AjuI GAANNNNNNNTTGG 2 cut(s) 325, 357
AluBI AGCT 7 cut(s) 15, 22, 65, 354, 482, 670, 683
AluI AGCT 7 cut(s) 15, 22, 65, 354, 482, 670, 683
Alw21I GWGCWC 1 cut(s) 711
Alw44I GTGCAC 1 cut(s) 707
AlwI GGATC 1 cut(s) 389
AlwNI CAGNNNCTG 1 cut(s) 800
Ama87I CYCGRG 1 cut(s) 862
AoxI GGCC 2 cut(s) 803, 812
ApaLI GTGCAC 1 cut(s) 707
ApeKI GCWGC 4 cut(s) 351, 670, 841, 905
ApoI RAATTY 2 cut(s) 74, 184
AsiGI ACCGGT 1 cut(s) 517
Asp718I GGTACC 1 cut(s) 251
AspA2I CCTAGG 1 cut(s) 157
AspLEI GCGC 1 cut(s) 949
AspS9I GGNCC 2 cut(s) 803, 813
AsuHPI GGTGA 1 cut(s) 85
AvaI CYCGRG 1 cut(s) 862
AvrII CCTAGG 1 cut(s) 157
BaeGI GKGCMC 2 cut(s) 622, 711
BaeI ACNNNNGTAYC 2 cut(s) 869, 902
BanI GGYRCC 2 cut(s) 251, 617
BanII GRGCYC 1 cut(s) 863
BarI GAAGNNNNNNTAC 2 cut(s) 296, 328
Bbv12I GWGCWC 1 cut(s) 711
BbvI GCAGC 4 cut(s) 363, 657, 828, 892
BccI CCATC 1 cut(s) 578
BciT130I CCWGG 1 cut(s) 249
BfaI CTAG 3 cut(s) 158, 269, 644
BfmI CTRYAG 3 cut(s) 355, 364, 894
BglI GCCNNNNNGGC 1 cut(s) 811
BisI GCNGC 5 cut(s) 352, 489, 671, 842, 906
BlnI CCTAGG 1 cut(s) 157
BlsI GCNGC 5 cut(s) 353, 490, 672, 843, 907
Bme1390I CCNGG 1 cut(s) 249
BmeT110I CYCGRG 1 cut(s) 862
BmgT120I GGNCC 2 cut(s) 803, 813
BmiI GGNNCC 3 cut(s) 253, 619, 922
BmrFI CCNGG 1 cut(s) 249
BmrI ACTGGG 1 cut(s) 810
BmuI ACTGGG 1 cut(s) 810
BpuEI CTTGAG 1 cut(s) 836
BsaJI CCNNGG 3 cut(s) 157, 712, 863
BsaWI WCCGGW 1 cut(s) 517
Bsc4I CCNNNNNNNGG 1 cut(s) 498
Bse118I RCCGGY 2 cut(s) 113, 517
Bse1I ACTGG 1 cut(s) 805
Bse3DI GCAATG 1 cut(s) 579
BseBI CCWGG 1 cut(s) 249
BseDI CCNNGG 3 cut(s) 157, 712, 863
BseGI GGATG 3 cut(s) 228, 547, 658
BseLI CCNNNNNNNGG 1 cut(s) 498
BseMI GCAATG 1 cut(s) 579
BseNI ACTGG 1 cut(s) 805
BseRI GAGGAG 2 cut(s) 880, 914
BseSI GKGCMC 2 cut(s) 622, 711
BseXI GCAGC 4 cut(s) 363, 657, 828, 892
BseYI CCCAGC 1 cut(s) 683
BsgI GTGCAG 1 cut(s) 439
Bsh1236I CGCG 1 cut(s) 947
BshFI GGCC 2 cut(s) 805, 814
BshNI GGYRCC 2 cut(s) 251, 617
BshTI ACCGGT 1 cut(s) 517
BsiHKAI GWGCWC 1 cut(s) 711
BsiHKCI CYCGRG 1 cut(s) 862
BsiSI CCGG 2 cut(s) 114, 518
BslI CCNNNNNNNGG 1 cut(s) 498
BsnI GGCC 2 cut(s) 805, 814
BsoBI CYCGRG 1 cut(s) 862
Bsp1286I GDGCHC 3 cut(s) 622, 711, 863
Bsp143I GATC 1 cut(s) 394
BspACI CCGC 5 cut(s) 111, 473, 486, 489, 661
BspANI GGCC 2 cut(s) 805, 814
BspFNI CGCG 1 cut(s) 947
BspLI GGNNCC 3 cut(s) 253, 619, 922
BspPI GGATC 1 cut(s) 389
BspQI GCTCTTC 1 cut(s) 851
BspT107I GGYRCC 2 cut(s) 251, 617
BsrDI GCAATG 1 cut(s) 579
BsrFI RCCGGY 2 cut(s) 113, 517
BsrI ACTGG 1 cut(s) 805
BssAI RCCGGY 2 cut(s) 113, 517
BssECI CCNNGG 3 cut(s) 157, 712, 863
BssMI GATC 1 cut(s) 394
BssT1I CCWWGG 2 cut(s) 157, 712
Bst2UI CCWGG 1 cut(s) 249
Bst4CI ACNGT 4 cut(s) 168, 256, 359, 700
Bst6I CTCTTC 3 cut(s) 95, 621, 851
BstAPI GCANNNNNTGC 1 cut(s) 914
BstDEI CTNAG 1 cut(s) 881
BstENI CCTNNNNNAGG 1 cut(s) 496
BstF5I GGATG 3 cut(s) 228, 547, 658
BstFNI CGCG 1 cut(s) 947
BstHHI GCGC 1 cut(s) 949
BstKTI GATC 1 cut(s) 397
BstMBI GATC 1 cut(s) 394
BstMWI GCNNNNNNNGC 7 cut(s) 360, 479, 488, 667, 811, 867, 914
BstNI CCWGG 1 cut(s) 249
BstSCI CCNGG 1 cut(s) 247
BstSFI CTRYAG 3 cut(s) 355, 364, 894
BstSLI GKGCMC 2 cut(s) 622, 711
BstUI CGCG 1 cut(s) 947
BstV1I GCAGC 4 cut(s) 363, 657, 828, 892
BsuRI GGCC 2 cut(s) 805, 814
BtsCI GGATG 3 cut(s) 228, 547, 658
BtsI GCAGTG 1 cut(s) 711
BtsIMutI CAGTG 2 cut(s) 364, 711
CaiI CAGNNNCTG 1 cut(s) 800
CfoI GCGC 1 cut(s) 949
Cfr10I RCCGGY 2 cut(s) 113, 517
Cfr13I GGNCC 2 cut(s) 803, 813
CsiI ACCWGGT 1 cut(s) 247
Csp6I GTAC 3 cut(s) 169, 252, 696
CspAI ACCGGT 1 cut(s) 517
CspCI CAANNNNNGTGG 2 cut(s) 365, 400
CviAII CATG 4 cut(s) 145, 430, 532, 649
CviQI GTAC 3 cut(s) 169, 252, 696
DdeI CTNAG 1 cut(s) 881
DpnI GATC 1 cut(s) 396
DpnII GATC 1 cut(s) 394
Eam1104I CTCTTC 3 cut(s) 95, 621, 851
EarI CTCTTC 3 cut(s) 95, 621, 851
EciI GGCGGA 1 cut(s) 475
Eco130I CCWWGG 2 cut(s) 157, 712
Eco24I GRGCYC 1 cut(s) 863
Eco32I GATATC 1 cut(s) 373
Eco57I CTGAAG 1 cut(s) 809
Eco88I CYCGRG 1 cut(s) 862
EcoNI CCTNNNNNAGG 1 cut(s) 496
EcoRII CCWGG 1 cut(s) 247
EcoRV GATATC 1 cut(s) 373
EcoT14I CCWWGG 2 cut(s) 157, 712
EcoT38I GRGCYC 1 cut(s) 863
ErhI CCWWGG 2 cut(s) 157, 712
FaeI CATG 4 cut(s) 148, 433, 535, 652
FatI CATG 4 cut(s) 144, 429, 531, 648
FauI CCCGC 2 cut(s) 118, 654
FauNDI CATATG 1 cut(s) 910
FblI GTMKAC 3 cut(s) 163, 308, 566
Fnu4HI GCNGC 5 cut(s) 352, 489, 671, 842, 906
FokI GGATG 3 cut(s) 215, 554, 665
FriOI GRGCYC 1 cut(s) 863
Fsp4HI GCNGC 5 cut(s) 352, 489, 671, 842, 906
FspBI CTAG 3 cut(s) 158, 269, 644
GlaI GCGC 1 cut(s) 948
GluI GCNGC 5 cut(s) 352, 489, 671, 842, 906
GsaI CCCAGC 1 cut(s) 687
HaeIII GGCC 2 cut(s) 805, 814
HapII CCGG 2 cut(s) 114, 518
HhaI GCGC 1 cut(s) 949
Hin1II CATG 4 cut(s) 148, 433, 535, 652
Hin6I GCGC 1 cut(s) 947
HinP1I GCGC 1 cut(s) 947
HincII GTYRAC 4 cut(s) 31, 82, 279, 309
HindII GTYRAC 4 cut(s) 31, 82, 279, 309
HindIII AAGCTT 1 cut(s) 480
HinfI GANTC 2 cut(s) 717, 942
HpaI GTTAAC 1 cut(s) 279
HpaII CCGG 2 cut(s) 114, 518
HphI GGTGA 1 cut(s) 85
Hpy166II GTNNAC 7 cut(s) 31, 82, 164, 279, 309, 567, 709
Hpy188I TCNGA 2 cut(s) 216, 391
Hpy188III TCNNGA 3 cut(s) 232, 574, 853
Hpy8I GTNNAC 7 cut(s) 31, 82, 164, 279, 309, 567, 709
HpyAV CCTTC 4 cut(s) 107, 625, 784, 931
HpyCH4III ACNGT 4 cut(s) 168, 256, 359, 700
HpyCH4IV ACGT 1 cut(s) 336
HpyCH4V TGCA 8 cut(s) 205, 420, 673, 690, 704, 709, 844, 908
HpyF10VI GCNNNNNNNGC 7 cut(s) 360, 479, 488, 667, 811, 867, 914
HpyF3I CTNAG 1 cut(s) 881
HpySE526I ACGT 1 cut(s) 336
Hsp92II CATG 4 cut(s) 148, 433, 535, 652
HspAI GCGC 1 cut(s) 947
KpnI GGTACC 1 cut(s) 255
KspAI GTTAAC 1 cut(s) 279
Kzo9I GATC 1 cut(s) 394
LguI GCTCTTC 1 cut(s) 851
LmnI GCTCC 4 cut(s) 460, 472, 667, 867
Lsp1109I GCAGC 4 cut(s) 363, 657, 828, 892
MabI ACCWGGT 1 cut(s) 247
MaeI CTAG 3 cut(s) 158, 269, 644
MaeII ACGT 1 cut(s) 336
MaeIII GTNAC 2 cut(s) 422, 523
MalI GATC 1 cut(s) 396
MboI GATC 1 cut(s) 394
MboII GAAGA 4 cut(s) 82, 488, 638, 868
MhlI GDGCHC 3 cut(s) 622, 711, 863
MluCI AATT 2 cut(s) 74, 184
MlyI GAGTC 2 cut(s) 726, 936
MmeI TCCRAC 2 cut(s) 130, 948
MnlI CCTC 7 cut(s) 98, 502, 608, 649, 858, 892, 895
MseI TTAA 2 cut(s) 278, 639
MslI CAYNNNNRTG 1 cut(s) 536
MspA1I CMGCKG 1 cut(s) 683
MspI CCGG 2 cut(s) 114, 518
MspR9I CCNGG 1 cut(s) 249
MvaI CCWGG 1 cut(s) 249
MvnI CGCG 1 cut(s) 947
MwoI GCNNNNNNNGC 7 cut(s) 360, 479, 488, 667, 811, 867, 914
NdeI CATATG 1 cut(s) 910
NdeII GATC 1 cut(s) 394
NlaIII CATG 4 cut(s) 148, 433, 535, 652
NlaIV GGNNCC 3 cut(s) 253, 619, 922
NmuCI GTSAC 1 cut(s) 422
PciSI GCTCTTC 1 cut(s) 851
PinAI ACCGGT 1 cut(s) 517
PkrI GCNGC 5 cut(s) 353, 490, 672, 843, 907
PleI GAGTC 2 cut(s) 725, 936
PpsI GAGTC 2 cut(s) 725, 936
Psp6I CCWGG 1 cut(s) 247
PspFI CCCAGC 1 cut(s) 683
PspGI CCWGG 1 cut(s) 247
PspN4I GGNNCC 3 cut(s) 253, 619, 922
PspPI GGNCC 2 cut(s) 803, 813
PstNI CAGNNNCTG 1 cut(s) 800
PvuII CAGCTG 1 cut(s) 683
RsaI GTAC 3 cut(s) 170, 253, 697
RsaNI GTAC 3 cut(s) 169, 252, 696
RseI CAYNNNNRTG 1 cut(s) 536
SalI GTCGAC 1 cut(s) 307
SapI GCTCTTC 1 cut(s) 851
SaqAI TTAA 2 cut(s) 278, 639
SatI GCNGC 5 cut(s) 352, 489, 671, 842, 906
Sau3AI GATC 1 cut(s) 394
Sau96I GGNCC 2 cut(s) 803, 813
SchI GAGTC 2 cut(s) 726, 936
ScrFI CCNGG 1 cut(s) 249
SduI GDGCHC 3 cut(s) 622, 711, 863
SexAI ACCWGGT 1 cut(s) 247
SfcI CTRYAG 3 cut(s) 355, 364, 894
SfiI GGCCNNNNNGGCC 1 cut(s) 811
SmiMI CAYNNNNRTG 1 cut(s) 536
SmlI CTYRAG 1 cut(s) 851
SmoI CTYRAG 1 cut(s) 851
Sse9I AATT 2 cut(s) 74, 184
SsiI CCGC 5 cut(s) 111, 473, 486, 489, 661
SspMI CTAG 3 cut(s) 158, 269, 644
StyD4I CCNGG 1 cut(s) 247
StyI CCWWGG 2 cut(s) 157, 712
TaaI ACNGT 4 cut(s) 168, 256, 359, 700
TaiI ACGT 1 cut(s) 339
TaqI TCGA 3 cut(s) 288, 308, 575
TasI AATT 2 cut(s) 74, 184
TauI GCSGC 1 cut(s) 491
Tru1I TTAA 2 cut(s) 278, 639
Tru9I TTAA 2 cut(s) 278, 639
TscAI CASTG 2 cut(s) 364, 711
TseFI GTSAC 1 cut(s) 422
TseI GCWGC 4 cut(s) 351, 670, 841, 905
Tsp45I GTSAC 1 cut(s) 422
TspDTI ATGAA 1 cut(s) 837
TspRI CASTG 2 cut(s) 364, 711
VneI GTGCAC 1 cut(s) 707
XagI CCTNNNNNAGG 1 cut(s) 496
XapI RAATTY 2 cut(s) 74, 184
XmaJI CCTAGG 1 cut(s) 157
XmiI GTMKAC 3 cut(s) 163, 308, 566
XspI CTAG 3 cut(s) 158, 269, 644
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.