Rmu_sc0004645.1_g000006

Protein of unknown function (DUF674)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0004645.1
OG0000352
Physical Location & Seq
Reverse (-)
32596 .. 33069
474 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0004645.1_g000006.1.cds

Sequence Viewer

Length: 474 bp
atggcaacctcctccagttccactgttagcctgcagctcctcatcgatacaaagagtgaaaaggttctgtttgccgaagccggtaaggactttgtcgattttctgttcaccctgctctctttgcctgtaggcacagtcatcaggcttctctctaaggatggcatggtgggtagctttggaaaactgtaccagagcgtcgaaaatctgaatgatacatacatgcaacccaatctcaacaaggacgtccttctgaaacctaaggcaccacttgctggatccaacatccttaagctgagcaacactgaaccaagtgctcagaaaccgatctacatgtgtgcgagtgggaattactacaagtatgtgtccgacgaccctaaagtcaagtgtccatcgtgcaataacaccttgagcagcaagacaacttttgttgcttcaccactacctcagaagaaacttatggcgccggtggagtag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF674

Protein Analysis

157

Amino Acids

17.08

Weight (kDa)

8.91

Isoelectric Point (pI)

42.48

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000352)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g24890 FvH4_7g21280 FvH4_7g21300 FvH4_7g21300 FvH4_7g21310 FvH4_7g21330 FvH4_7g21340 FvH4_7g21600 FvH4_7g21610 FvH4_7g21630
malus_domestica MD07G1190400.v1.1 MD07G1190600.v1.1
prunus_persica Prupe.2G228600_v2.0.a1 Prupe.6G198200_v2.0.a1
pyrus_communis pycom07g18010
rosa_chinensis RchiOBHm_Chr1g0365711 RchiOBHm_Chr1g0365721 RchiOBHm_Chr1g0365731 RchiOBHm_Chr1g0365991 RchiOBHm_Chr5g0044511 RchiOBHm_Chr6g0247041 RchiOBHm_Chr6g0247081
rosa_laevigata RLG00000015223 RLG00000027405 RLG00000027406 RLG00000027407 RLG00000027408 RLG00000027409 RLG00000027411 RLG00000027413 RLG00000034277
rosa_multiflora Rmu_co8279495.1_g000001 Rmu_co8358963.1_g000001 Rmu_co8520123.1_g000003 Rmu_sc0002093.1_g000019 Rmu_sc0002093.1_g000024 Rmu_sc0002093.1_g000025 Rmu_sc0002093.1_g000029 Rmu_sc0002476.1_g000002 Rmu_sc0002476.1_g000021 Rmu_sc0003466.1_g000011 Rmu_sc0004288.1_g000006 Rmu_sc0004288.1_g000007 Rmu_sc0004311.1_g000022 Rmu_sc0004311.1_g000023 Rmu_sc0004311.1_g000026 Rmu_sc0004311.1_g000033 Rmu_sc0004577.1_g000008 Rmu_sc0004645.1_g000005 Rmu_sc0004645.1_g000006 Rmu_sc0006406.1_g000011 Rmu_sc0006406.1_g000012 Rmu_sc0009967.1_g000002 Rmu_sc0011598.1_g000003 Rmu_ssc0000151.1_g000015
rosa_roxburghii Rroxscaffold_1G00036500 Rroxscaffold_3G00276050 Rroxscaffold_4G00290950 Rroxscaffold_4G00290960 Rroxscaffold_4G00290970 Rroxscaffold_4G00290980 Rroxscaffold_4G00291000 Rroxscaffold_4G00291030 Rroxscaffold_4G00291060
rosa_rugosa Rorug01G0322900 Rorug01G0323000 Rorug01G0323100 Rorug01G0323200 Rorug01G0323300 Rorug01G0323400 Rorug01G0323500 Rorug01G0323600 Rorug05G0214700 Rorug05G0522100
rosa_samantha Rh1AG332000 Rh1AG332200 Rh1AG332300 Rh1AG334700 Rh1AG334800 Rh1AG335200 Rh1CG309900 Rh1CG310000 Rh1CG310100 Rh1DG325100 Rh1DG325300 Rh1DG325500 Rh5AG299000 Rh5BG306500 Rh5DG315800 Rh6AG037200 Rh6BG031900 Rh6BG032000 Rh6CG032300 Rh6CG032400 Rh6CG033200 Rh6DG030900
rosa_wichuraiana Rw0G001530 Rw1G019070 Rw1G029470 Rw1G029480 Rw1G029490 Rw1G029500 Rw1G029510 Rw1G029700 Rw5G027640 Rw5G027670 Rw6G003160 Rw6G003190

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 377
AatII GACGTC 1 cut(s) 246
AccB1I GGYRCC 2 cut(s) 262, 460
AccB7I CCANNNNNTGG 1 cut(s) 272
AclWI GGATC 2 cut(s) 270, 283
AcyI GRCGYC 2 cut(s) 243, 461
AfaI GTAC 1 cut(s) 188
AfiI CCNNNNNNNGG 1 cut(s) 272
AflII CTTAAG 1 cut(s) 287
AflIII ACRYGT 1 cut(s) 330
AluBI AGCT 3 cut(s) 37, 174, 292
AluI AGCT 3 cut(s) 37, 174, 292
Alw21I GWGCWC 1 cut(s) 316
AlwI GGATC 2 cut(s) 270, 283
ApeKI GCWGC 2 cut(s) 34, 411
Asp700I GAANNNNTTC 1 cut(s) 63
AspLEI GCGC 1 cut(s) 463
AsuHPI GGTGA 2 cut(s) 100, 426
AxyI CCTNAGG 1 cut(s) 258
BamHI GGATCC 1 cut(s) 275
BanI GGYRCC 2 cut(s) 262, 460
Bbv12I GWGCWC 1 cut(s) 316
BbvI GCAGC 2 cut(s) 46, 423
BccI CCATC 2 cut(s) 152, 397
BfmI CTRYAG 2 cut(s) 32, 126
BfoI RGCGCY 1 cut(s) 464
BfrI CTTAAG 1 cut(s) 287
BisI GCNGC 2 cut(s) 35, 412
BlpI GCTNAGC 1 cut(s) 293
BlsI GCNGC 2 cut(s) 36, 413
BmiI GGNNCC 3 cut(s) 264, 277, 462
Bpu1102I GCTNAGC 1 cut(s) 293
BpuEI CTTGAG 1 cut(s) 427
Bsa29I ATCGAT 1 cut(s) 45
BsaHI GRCGYC 2 cut(s) 243, 461
Bsc4I CCNNNNNNNGG 1 cut(s) 272
Bse118I RCCGGY 2 cut(s) 80, 463
Bse1I ACTGG 1 cut(s) 15
Bse21I CCTNAGG 1 cut(s) 258
BseCI ATCGAT 1 cut(s) 45
BseGI GGATG 2 cut(s) 163, 282
BseLI CCNNNNNNNGG 1 cut(s) 272
BseMII CTCAG 3 cut(s) 284, 329, 458
BseNI ACTGG 1 cut(s) 15
BseRI GAGGAG 1 cut(s) 29
BseXI GCAGC 2 cut(s) 46, 423
BshNI GGYRCC 2 cut(s) 262, 460
BshVI ATCGAT 1 cut(s) 45
BsiHKAI GWGCWC 1 cut(s) 316
BsiSI CCGG 2 cut(s) 81, 464
BslI CCNNNNNNNGG 1 cut(s) 272
Bsp1286I GDGCHC 1 cut(s) 316
Bsp143I GATC 2 cut(s) 275, 324
Bsp1720I GCTNAGC 1 cut(s) 293
BspCNI CTCAG 3 cut(s) 285, 328, 457
BspDI ATCGAT 1 cut(s) 45
BspLI GGNNCC 3 cut(s) 264, 277, 462
BspMAI CTGCAG 1 cut(s) 36
BspPI GGATC 2 cut(s) 270, 283
BspT107I GGYRCC 2 cut(s) 262, 460
BspTI CTTAAG 1 cut(s) 287
BsrFI RCCGGY 2 cut(s) 80, 463
BsrI ACTGG 1 cut(s) 15
BssAI RCCGGY 2 cut(s) 80, 463
BssMI GATC 2 cut(s) 275, 324
BssNI GRCGYC 2 cut(s) 243, 461
Bst4CI ACNGT 3 cut(s) 25, 136, 186
BstACI GRCGYC 2 cut(s) 243, 461
BstAFI CTTAAG 1 cut(s) 287
BstAPI GCANNNNNTGC 1 cut(s) 269
BstC8I GCNNGC 1 cut(s) 32
BstDEI CTNAG 5 cut(s) 153, 258, 293, 315, 444
BstF5I GGATG 2 cut(s) 163, 282
BstH2I RGCGCY 1 cut(s) 464
BstHHI GCGC 1 cut(s) 463
BstKTI GATC 2 cut(s) 278, 327
BstMBI GATC 2 cut(s) 275, 324
BstMWI GCNNNNNNNGC 2 cut(s) 121, 269
BstNSI RCATGY 2 cut(s) 223, 334
BstSFI CTRYAG 2 cut(s) 32, 126
BstV1I GCAGC 2 cut(s) 46, 423
BstX2I RGATCY 1 cut(s) 275
BstYI RGATCY 1 cut(s) 275
Bsu15I ATCGAT 1 cut(s) 45
Bsu36I CCTNAGG 1 cut(s) 258
BsuTUI ATCGAT 1 cut(s) 45
BtsCI GGATG 2 cut(s) 163, 282
BtsIMutI CAGTG 2 cut(s) 21, 300
Cac8I GCNNGC 1 cut(s) 32
CfoI GCGC 1 cut(s) 463
Cfr10I RCCGGY 2 cut(s) 80, 463
ClaI ATCGAT 1 cut(s) 45
CseI GACGC 1 cut(s) 184
Csp6I GTAC 1 cut(s) 187
CviAII CATG 3 cut(s) 163, 220, 331
CviJI RGCY 6 cut(s) 30, 37, 80, 145, 174, 292
CviKI_1 RGCY 6 cut(s) 30, 37, 80, 145, 174, 292
CviQI GTAC 1 cut(s) 187
DdeI CTNAG 5 cut(s) 153, 258, 293, 315, 444
DinI GGCGCC 1 cut(s) 462
DpnI GATC 2 cut(s) 277, 326
DpnII GATC 2 cut(s) 275, 324
DrdI GACNNNNNNGTC 1 cut(s) 377
DseDI GACNNNNNNGTC 1 cut(s) 377
Eco81I CCTNAGG 1 cut(s) 258
EgeI GGCGCC 1 cut(s) 462
EheI GGCGCC 1 cut(s) 462
FaeI CATG 3 cut(s) 166, 223, 334
FaiI YATR 6 cut(s) 164, 217, 221, 332, 360, 458
FatI CATG 3 cut(s) 162, 219, 330
Fnu4HI GCNGC 2 cut(s) 35, 412
FokI GGATG 2 cut(s) 170, 269
Fsp4HI GCNGC 2 cut(s) 35, 412
GlaI GCGC 1 cut(s) 462
GluI GCNGC 2 cut(s) 35, 412
HaeII RGCGCY 1 cut(s) 464
HapII CCGG 2 cut(s) 81, 464
HgaI GACGC 1 cut(s) 184
HhaI GCGC 1 cut(s) 463
Hin1I GRCGYC 2 cut(s) 243, 461
Hin1II CATG 3 cut(s) 166, 223, 334
Hin6I GCGC 1 cut(s) 461
HinP1I GCGC 1 cut(s) 461
HpaII CCGG 2 cut(s) 81, 464
HphI GGTGA 2 cut(s) 100, 426
Hpy166II GTNNAC 1 cut(s) 108
Hpy188I TCNGA 5 cut(s) 207, 252, 318, 367, 447
Hpy8I GTNNAC 1 cut(s) 108
Hpy99I CGWCG 2 cut(s) 200, 371
HpyAV CCTTC 1 cut(s) 257
HpyCH4III ACNGT 3 cut(s) 25, 136, 186
HpyCH4IV ACGT 1 cut(s) 243
HpyCH4V TGCA 3 cut(s) 34, 223, 396
HpyF10VI GCNNNNNNNGC 2 cut(s) 121, 269
HpyF3I CTNAG 5 cut(s) 153, 258, 293, 315, 444
HpySE526I ACGT 1 cut(s) 243
Hsp92I GRCGYC 2 cut(s) 243, 461
Hsp92II CATG 3 cut(s) 166, 223, 334
HspAI GCGC 1 cut(s) 461
KasI GGCGCC 1 cut(s) 460
Kzo9I GATC 2 cut(s) 275, 324
LmnI GCTCC 1 cut(s) 42
LpnPI CCDG 8 cut(s) 28, 44, 94, 125, 127, 138, 203, 258
Lsp1109I GCAGC 2 cut(s) 46, 423
MaeII ACGT 1 cut(s) 243
MalI GATC 2 cut(s) 277, 326
MboI GATC 2 cut(s) 275, 324
MboII GAAGA 1 cut(s) 460
MflI RGATCY 1 cut(s) 275
MhlI GDGCHC 1 cut(s) 316
MluCI AATT 1 cut(s) 346
Mly113I GGCGCC 1 cut(s) 461
MmeI TCCRAC 2 cut(s) 303, 390
MnlI CCTC 4 cut(s) 19, 22, 50, 453
MroXI GAANNNNTTC 1 cut(s) 63
MseI TTAA 1 cut(s) 288
MspCI CTTAAG 1 cut(s) 287
MspI CCGG 2 cut(s) 81, 464
MwoI GCNNNNNNNGC 2 cut(s) 121, 269
NarI GGCGCC 1 cut(s) 461
NdeII GATC 2 cut(s) 275, 324
NlaIII CATG 3 cut(s) 166, 223, 334
NlaIV GGNNCC 3 cut(s) 264, 277, 462
NspI RCATGY 2 cut(s) 223, 334
PciI ACATGT 1 cut(s) 330
PdmI GAANNNNTTC 1 cut(s) 63
PflFI GACNNNGTC 1 cut(s) 92
PflMI CCANNNNNTGG 1 cut(s) 272
PkrI GCNGC 2 cut(s) 36, 413
PluTI GGCGCC 1 cut(s) 464
PscI ACATGT 1 cut(s) 330
PspN4I GGNNCC 3 cut(s) 264, 277, 462
PstI CTGCAG 1 cut(s) 36
PsuI RGATCY 1 cut(s) 275
PsyI GACNNNGTC 1 cut(s) 92
RsaI GTAC 1 cut(s) 188
RsaNI GTAC 1 cut(s) 187
SaqAI TTAA 1 cut(s) 288
SatI GCNGC 2 cut(s) 35, 412
Sau3AI GATC 2 cut(s) 275, 324
SduI GDGCHC 1 cut(s) 316
SetI ASST 9 cut(s) 11, 39, 66, 176, 246, 259, 294, 407, 445
SfcI CTRYAG 2 cut(s) 32, 126
SfoI GGCGCC 1 cut(s) 462
SgrAI CRCCGGYG 1 cut(s) 463
SmlI CTYRAG 2 cut(s) 287, 406
SmoI CTYRAG 2 cut(s) 287, 406
Sse9I AATT 1 cut(s) 346
SspDI GGCGCC 1 cut(s) 460
TaaI ACNGT 3 cut(s) 25, 136, 186
TaiI ACGT 1 cut(s) 246
TaqI TCGA 3 cut(s) 45, 96, 198
TasI AATT 1 cut(s) 346
Tru1I TTAA 1 cut(s) 288
Tru9I TTAA 1 cut(s) 288
TscAI CASTG 2 cut(s) 28, 307
TseI GCWGC 2 cut(s) 34, 411
TspRI CASTG 2 cut(s) 28, 307
Tth111I GACNNNGTC 1 cut(s) 92
Van91I CCANNNNNTGG 1 cut(s) 272
Vha464I CTTAAG 1 cut(s) 287
XceI RCATGY 2 cut(s) 223, 334
XmnI GAANNNNTTC 1 cut(s) 63
ZraI GACGTC 1 cut(s) 244
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.