Rh6CG032300

Protein of unknown function (DUF674)

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6C
Physical Location & Seq
Reverse (-)
2996916 .. 3002826
5911 bp
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UTR
Exon/CDS
Intron
Rh6CG032300.1

Sequence Viewer

Length: 447 bp
ATGCCCGTCCTGCCAGTACAAAATGAGTGCCAAGACGAGTTATGTGTCTCCACCCGGTACTACAAAGACAGAAGAAGGGTTGTGAAAGGGGTTGTTACATATATTATAACTGATGATTTAGAGGTGAAACCTAATGTTACCATTACCACAATTCTTCGGCTGGAGAGCTTCGATGTTAAGTGTATTTATGACCTTGAAGAGAAGGTCGTTAATGTAGGCATGGATGAGGTGGTAGTCAATGTTGGCTGTGGCACAGGAATTCTTTCTATCTTTTGTGCTCAAGCTGGTGCAAAATGTTTTATAGGAAAGAAAGCTGCCTATGCCTTGAACGAGGGTCGTCTGGGAGTAATTGAAGATAGGTCATGTACAACGACTTATTGTATGCTTCTGACTAATGCTGCTCCACCGGATGCTAAAGAATCGTCCAACTGTGAGAGAGATGCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

148

Amino Acids

16.31

Weight (kDa)

4.92

Isoelectric Point (pI)

48.47

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF674 PF05056 26 - 78 2.3e-07 Protein of unknown function (DUF674)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000352)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g24890 FvH4_7g21280 FvH4_7g21300 FvH4_7g21300 FvH4_7g21310 FvH4_7g21330 FvH4_7g21340 FvH4_7g21600 FvH4_7g21610 FvH4_7g21630
malus_domestica MD07G1190400.v1.1 MD07G1190600.v1.1
prunus_persica Prupe.2G228600_v2.0.a1 Prupe.6G198200_v2.0.a1
pyrus_communis pycom07g18010
rosa_chinensis RchiOBHm_Chr1g0365711 RchiOBHm_Chr1g0365721 RchiOBHm_Chr1g0365731 RchiOBHm_Chr1g0365991 RchiOBHm_Chr5g0044511 RchiOBHm_Chr6g0247041 RchiOBHm_Chr6g0247081
rosa_laevigata RLG00000015223 RLG00000027405 RLG00000027406 RLG00000027407 RLG00000027408 RLG00000027409 RLG00000027411 RLG00000027413 RLG00000034277
rosa_multiflora Rmu_co8279495.1_g000001 Rmu_co8358963.1_g000001 Rmu_co8520123.1_g000003 Rmu_sc0002093.1_g000019 Rmu_sc0002093.1_g000024 Rmu_sc0002093.1_g000025 Rmu_sc0002093.1_g000029 Rmu_sc0002476.1_g000002 Rmu_sc0002476.1_g000021 Rmu_sc0003466.1_g000011 Rmu_sc0004288.1_g000006 Rmu_sc0004288.1_g000007 Rmu_sc0004311.1_g000022 Rmu_sc0004311.1_g000023 Rmu_sc0004311.1_g000026 Rmu_sc0004311.1_g000033 Rmu_sc0004577.1_g000008 Rmu_sc0004645.1_g000005 Rmu_sc0004645.1_g000006 Rmu_sc0006406.1_g000011 Rmu_sc0006406.1_g000012 Rmu_sc0009967.1_g000002 Rmu_sc0011598.1_g000003 Rmu_ssc0000151.1_g000015
rosa_roxburghii Rroxscaffold_1G00036500 Rroxscaffold_3G00276050 Rroxscaffold_4G00290950 Rroxscaffold_4G00290960 Rroxscaffold_4G00290970 Rroxscaffold_4G00290980 Rroxscaffold_4G00291000 Rroxscaffold_4G00291030 Rroxscaffold_4G00291060
rosa_rugosa Rorug01G0322900 Rorug01G0323000 Rorug01G0323100 Rorug01G0323200 Rorug01G0323300 Rorug01G0323400 Rorug01G0323500 Rorug01G0323600 Rorug05G0214700 Rorug05G0522100
rosa_samantha Rh1AG332000 Rh1AG332200 Rh1AG332300 Rh1AG334700 Rh1AG334800 Rh1AG335200 Rh1CG309900 Rh1CG310000 Rh1CG310100 Rh1DG325100 Rh1DG325300 Rh1DG325500 Rh5AG299000 Rh5BG306500 Rh5DG315800 Rh6AG037200 Rh6BG031900 Rh6BG032000 Rh6CG032300 Rh6CG032400 Rh6CG033200 Rh6DG030900
rosa_wichuraiana Rw0G001530 Rw1G019070 Rw1G029470 Rw1G029480 Rw1G029490 Rw1G029500 Rw1G029510 Rw1G029700 Rw5G027640 Rw5G027670 Rw6G003160 Rw6G003190

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 107
AcsI RAATTY 1 cut(s) 258
AfaI GTAC 3 cut(s) 18, 59, 367
AgsI TTSAA 3 cut(s) 197, 328, 353
AluBI AGCT 3 cut(s) 168, 284, 314
AluI AGCT 3 cut(s) 168, 284, 314
Alw21I GWGCWC 1 cut(s) 280
Alw26I GTCTC 1 cut(s) 52
ApeKI GCWGC 2 cut(s) 314, 398
ApoI RAATTY 1 cut(s) 258
Asp700I GAANNNNTTC 1 cut(s) 262
AsuC2I CCSGG 1 cut(s) 55
AsuHPI GGTGA 1 cut(s) 136
Bbv12I GWGCWC 1 cut(s) 280
BbvI GCAGC 2 cut(s) 301, 385
BcnI CCSGG 1 cut(s) 55
BcoDI GTCTC 1 cut(s) 52
BisI GCNGC 2 cut(s) 315, 399
BlsI GCNGC 2 cut(s) 316, 400
Bme1390I CCNGG 1 cut(s) 55
BmrFI CCNGG 1 cut(s) 55
BmsI GCATC 2 cut(s) 400, 430
BpmI CTGGAG 1 cut(s) 182
BpuEI CTTGAG 1 cut(s) 264
BpuMI CCSGG 1 cut(s) 55
BsaWI WCCGGW 1 cut(s) 406
Bse1I ACTGG 1 cut(s) 14
BseGI GGATG 2 cut(s) 229, 415
BseNI ACTGG 1 cut(s) 14
BseXI GCAGC 2 cut(s) 301, 385
BsiHKAI GWGCWC 1 cut(s) 280
BsiSI CCGG 2 cut(s) 55, 407
BsmAI GTCTC 1 cut(s) 52
Bsp1286I GDGCHC 1 cut(s) 280
Bsp1407I TGTACA 1 cut(s) 365
BsrGI TGTACA 1 cut(s) 365
BsrI ACTGG 1 cut(s) 14
Bst4CI ACNGT 1 cut(s) 431
Bst6I CTCTTC 1 cut(s) 192
BstAUI TGTACA 1 cut(s) 365
BstF5I GGATG 2 cut(s) 229, 415
BstMAI GTCTC 1 cut(s) 52
BstMWI GCNNNNNNNGC 2 cut(s) 10, 320
BstSCI CCNGG 1 cut(s) 53
BstV1I GCAGC 2 cut(s) 301, 385
BtsCI GGATG 2 cut(s) 229, 415
Csp6I GTAC 3 cut(s) 17, 58, 366
CviAII CATG 2 cut(s) 220, 363
CviJI RGCY 5 cut(s) 160, 168, 246, 284, 314
CviKI_1 RGCY 5 cut(s) 160, 168, 246, 284, 314
CviQI GTAC 3 cut(s) 17, 58, 366
Eam1104I CTCTTC 1 cut(s) 192
EarI CTCTTC 1 cut(s) 192
EcoRI GAATTC 1 cut(s) 258
FaeI CATG 2 cut(s) 223, 366
FatI CATG 2 cut(s) 219, 362
Fnu4HI GCNGC 2 cut(s) 315, 399
FokI GGATG 2 cut(s) 236, 422
Fsp4HI GCNGC 2 cut(s) 315, 399
GluI GCNGC 2 cut(s) 315, 399
GsuI CTGGAG 1 cut(s) 182
HapII CCGG 2 cut(s) 55, 407
Hin1II CATG 2 cut(s) 223, 366
HinfI GANTC 1 cut(s) 419
HpaII CCGG 2 cut(s) 55, 407
HphI GGTGA 1 cut(s) 136
Hpy188I TCNGA 1 cut(s) 390
HpyAV CCTTC 2 cut(s) 69, 196
HpyCH4III ACNGT 1 cut(s) 431
HpyCH4V TGCA 1 cut(s) 290
HpyF10VI GCNNNNNNNGC 2 cut(s) 10, 320
Hsp92II CATG 2 cut(s) 223, 366
LmnI GCTCC 1 cut(s) 406
LpnPI CCDG 8 cut(s) 23, 27, 68, 146, 240, 270, 326, 420
Lsp1109I GCAGC 2 cut(s) 301, 385
LweI GCATC 2 cut(s) 400, 430
MaeIII GTNAC 2 cut(s) 94, 136
MboII GAAGA 4 cut(s) 84, 146, 209, 365
MhlI GDGCHC 1 cut(s) 280
MluCI AATT 3 cut(s) 150, 258, 348
MnlI CCTC 3 cut(s) 115, 220, 325
MroXI GAANNNNTTC 1 cut(s) 262
MseI TTAA 3 cut(s) 177, 210, 445
MspI CCGG 2 cut(s) 55, 407
MspR9I CCNGG 1 cut(s) 55
MwoI GCNNNNNNNGC 2 cut(s) 10, 320
NciI CCSGG 1 cut(s) 55
NlaIII CATG 2 cut(s) 223, 366
PdmI GAANNNNTTC 1 cut(s) 262
PfeI GAWTC 1 cut(s) 419
PkrI GCNGC 2 cut(s) 316, 400
PsiI TTATAA 1 cut(s) 107
RsaI GTAC 3 cut(s) 18, 59, 367
RsaNI GTAC 3 cut(s) 17, 58, 366
SaqAI TTAA 3 cut(s) 177, 210, 445
SatI GCNGC 2 cut(s) 315, 399
ScrFI CCNGG 1 cut(s) 55
SduI GDGCHC 1 cut(s) 280
SetI ASST 9 cut(s) 126, 133, 170, 195, 207, 231, 286, 316, 362
SfaNI GCATC 2 cut(s) 400, 430
SmlI CTYRAG 1 cut(s) 279
SmoI CTYRAG 1 cut(s) 279
Sse9I AATT 3 cut(s) 150, 258, 348
StyD4I CCNGG 1 cut(s) 53
TaaI ACNGT 1 cut(s) 431
TaqI TCGA 1 cut(s) 171
TasI AATT 3 cut(s) 150, 258, 348
TatI WGTACW 2 cut(s) 16, 365
TfiI GAWTC 1 cut(s) 419
Tru1I TTAA 3 cut(s) 177, 210, 445
Tru9I TTAA 3 cut(s) 177, 210, 445
TseI GCWGC 2 cut(s) 314, 398
XapI RAATTY 1 cut(s) 258
XmnI GAANNNNTTC 1 cut(s) 262
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.