Rroxscaffold_4G00291060

Protein of unknown function (DUF674)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000004
OG0000352
Physical Location & Seq
Forward (+)
11471556 .. 11472435
880 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_4G00291060.1

Sequence Viewer

Length: 348 bp
ATGCACAGAGATAACATTATCCTAAAAAAAGAGAGCCATGAAGTTGTGTGTGCAGAGTCTGATAAGGACTTTGTGGATTTCCTCTTCACTCTCGTCTCTTTGCCTCTTGCCACCGTGGCCAGGCTTCTTTCCAAGAACGGCCACGGCAGCCTCGGAAGTGTAGGCAAAATCTCAGACAGCGTCGAAAACCTCAGCGATGATTATATGAAACCGGATTTTAACAAGGACGGCCTTCTGAAATCCAACAAACCCGTCGCTGGAGCTAACAACATCCTCCATTTGTCAACCGATGACGTCAAACTAGCACCAAAACCTCAAACAGTAATGGTAGATGAACCATTTTTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF674

Protein Analysis

115

Amino Acids

12.63

Weight (kDa)

5.45

Isoelectric Point (pI)

33.33

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF674 PF05056 6 - 99 1.8e-15 Protein of unknown function (DUF674)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000352)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g24890 FvH4_7g21280 FvH4_7g21300 FvH4_7g21300 FvH4_7g21310 FvH4_7g21330 FvH4_7g21340 FvH4_7g21600 FvH4_7g21610 FvH4_7g21630
malus_domestica MD07G1190400.v1.1 MD07G1190600.v1.1
prunus_persica Prupe.2G228600_v2.0.a1 Prupe.6G198200_v2.0.a1
pyrus_communis pycom07g18010
rosa_chinensis RchiOBHm_Chr1g0365711 RchiOBHm_Chr1g0365721 RchiOBHm_Chr1g0365731 RchiOBHm_Chr1g0365991 RchiOBHm_Chr5g0044511 RchiOBHm_Chr6g0247041 RchiOBHm_Chr6g0247081
rosa_laevigata RLG00000015223 RLG00000027405 RLG00000027406 RLG00000027407 RLG00000027408 RLG00000027409 RLG00000027411 RLG00000027413 RLG00000034277
rosa_multiflora Rmu_co8279495.1_g000001 Rmu_co8358963.1_g000001 Rmu_co8520123.1_g000003 Rmu_sc0002093.1_g000019 Rmu_sc0002093.1_g000024 Rmu_sc0002093.1_g000025 Rmu_sc0002093.1_g000029 Rmu_sc0002476.1_g000002 Rmu_sc0002476.1_g000021 Rmu_sc0003466.1_g000011 Rmu_sc0004288.1_g000006 Rmu_sc0004288.1_g000007 Rmu_sc0004311.1_g000022 Rmu_sc0004311.1_g000023 Rmu_sc0004311.1_g000026 Rmu_sc0004311.1_g000033 Rmu_sc0004577.1_g000008 Rmu_sc0004645.1_g000005 Rmu_sc0004645.1_g000006 Rmu_sc0006406.1_g000011 Rmu_sc0006406.1_g000012 Rmu_sc0009967.1_g000002 Rmu_sc0011598.1_g000003 Rmu_ssc0000151.1_g000015
rosa_roxburghii Rroxscaffold_1G00036500 Rroxscaffold_3G00276050 Rroxscaffold_4G00290950 Rroxscaffold_4G00290960 Rroxscaffold_4G00290970 Rroxscaffold_4G00290980 Rroxscaffold_4G00291000 Rroxscaffold_4G00291030 Rroxscaffold_4G00291060
rosa_rugosa Rorug01G0322900 Rorug01G0323000 Rorug01G0323100 Rorug01G0323200 Rorug01G0323300 Rorug01G0323400 Rorug01G0323500 Rorug01G0323600 Rorug05G0214700 Rorug05G0522100
rosa_samantha Rh1AG332000 Rh1AG332200 Rh1AG332300 Rh1AG334700 Rh1AG334800 Rh1AG335200 Rh1CG309900 Rh1CG310000 Rh1CG310100 Rh1DG325100 Rh1DG325300 Rh1DG325500 Rh5AG299000 Rh5BG306500 Rh5DG315800 Rh6AG037200 Rh6BG031900 Rh6BG032000 Rh6CG032300 Rh6CG032400 Rh6CG033200 Rh6DG030900
rosa_wichuraiana Rw0G001530 Rw1G019070 Rw1G029470 Rw1G029480 Rw1G029490 Rw1G029500 Rw1G029510 Rw1G029700 Rw5G027640 Rw5G027670 Rw6G003160 Rw6G003190

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 297
AcoI YGGCCR 2 cut(s) 117, 139
AcyI GRCGYC 1 cut(s) 294
AfiI CCNNNNNNNGG 2 cut(s) 120, 257
AjnI CCWGG 1 cut(s) 119
AluBI AGCT 1 cut(s) 263
AluI AGCT 1 cut(s) 263
Alw26I GTCTC 1 cut(s) 100
AlwNI CAGNNNCTG 1 cut(s) 59
AoxI GGCC 3 cut(s) 117, 139, 229
ApeKI GCWGC 1 cut(s) 147
BalI TGGCCA 1 cut(s) 119
BbvCI CCTCAGC 1 cut(s) 191
BbvI GCAGC 1 cut(s) 159
BceAI ACGGC 3 cut(s) 154, 160, 244
BciT130I CCWGG 1 cut(s) 121
BcoDI GTCTC 1 cut(s) 100
BfaI CTAG 1 cut(s) 302
BglI GCCNNNNNGGC 1 cut(s) 116
BisI GCNGC 1 cut(s) 148
BlsI GCNGC 1 cut(s) 149
Bme1390I CCNGG 1 cut(s) 121
BmrFI CCNGG 1 cut(s) 121
BpmI CTGGAG 1 cut(s) 279
Bpu10I CCTNAGC 1 cut(s) 191
BsaHI GRCGYC 1 cut(s) 294
BsaJI CCNNGG 3 cut(s) 114, 142, 151
BsaWI WCCGGW 1 cut(s) 211
Bsc4I CCNNNNNNNGG 2 cut(s) 120, 257
BseBI CCWGG 1 cut(s) 121
BseDI CCNNGG 3 cut(s) 114, 142, 151
BseGI GGATG 1 cut(s) 270
BseLI CCNNNNNNNGG 2 cut(s) 120, 257
BseMII CTCAG 2 cut(s) 186, 205
BseXI GCAGC 1 cut(s) 159
BsgI GTGCAG 1 cut(s) 72
BshFI GGCC 3 cut(s) 119, 141, 231
BsiSI CCGG 1 cut(s) 212
BslI CCNNNNNNNGG 2 cut(s) 120, 257
BsmAI GTCTC 1 cut(s) 100
BsmBI CGTCTC 1 cut(s) 100
BsnI GGCC 3 cut(s) 119, 141, 231
BspANI GGCC 3 cut(s) 119, 141, 231
BspCNI CTCAG 2 cut(s) 185, 204
BssECI CCNNGG 3 cut(s) 114, 142, 151
BssNI GRCGYC 1 cut(s) 294
Bst2UI CCWGG 1 cut(s) 121
Bst4CI ACNGT 2 cut(s) 115, 322
Bst6I CTCTTC 1 cut(s) 89
BstACI GRCGYC 1 cut(s) 294
BstDEI CTNAG 2 cut(s) 172, 191
BstDSI CCRYGG 2 cut(s) 114, 142
BstF5I GGATG 1 cut(s) 270
BstMAI GTCTC 1 cut(s) 100
BstMWI GCNNNNNNNGC 2 cut(s) 116, 147
BstNI CCWGG 1 cut(s) 121
BstSCI CCNGG 1 cut(s) 119
BstV1I GCAGC 1 cut(s) 159
BsuRI GGCC 3 cut(s) 119, 141, 231
BtgI CCRYGG 2 cut(s) 114, 142
BtgZI GCGATG 1 cut(s) 210
BtsCI GGATG 1 cut(s) 270
CaiI CAGNNNCTG 1 cut(s) 59
CseI GACGC 1 cut(s) 169
CviAII CATG 1 cut(s) 38
CviJI RGCY 7 cut(s) 36, 119, 124, 141, 150, 231, 263
CviKI_1 RGCY 7 cut(s) 36, 119, 124, 141, 150, 231, 263
DdeI CTNAG 2 cut(s) 172, 191
EaeI YGGCCR 2 cut(s) 117, 139
Eam1104I CTCTTC 1 cut(s) 89
EarI CTCTTC 1 cut(s) 89
EcoRII CCWGG 1 cut(s) 119
Esp3I CGTCTC 1 cut(s) 100
FaeI CATG 1 cut(s) 41
FaiI YATR 3 cut(s) 39, 204, 206
FatI CATG 1 cut(s) 37
Fnu4HI GCNGC 1 cut(s) 148
FokI GGATG 1 cut(s) 257
Fsp4HI GCNGC 1 cut(s) 148
FspBI CTAG 1 cut(s) 302
GluI GCNGC 1 cut(s) 148
GsuI CTGGAG 1 cut(s) 279
HaeIII GGCC 3 cut(s) 119, 141, 231
HapII CCGG 1 cut(s) 212
HgaI GACGC 1 cut(s) 169
Hin1I GRCGYC 1 cut(s) 294
Hin1II CATG 1 cut(s) 41
HincII GTYRAC 1 cut(s) 285
HindII GTYRAC 1 cut(s) 285
HinfI GANTC 1 cut(s) 56
HpaII CCGG 1 cut(s) 212
Hpy166II GTNNAC 1 cut(s) 285
Hpy188I TCNGA 4 cut(s) 61, 155, 175, 237
Hpy8I GTNNAC 1 cut(s) 285
Hpy99I CGWCG 2 cut(s) 185, 257
HpyAV CCTTC 1 cut(s) 242
HpyCH4III ACNGT 2 cut(s) 115, 322
HpyCH4IV ACGT 1 cut(s) 294
HpyCH4V TGCA 2 cut(s) 4, 53
HpyF10VI GCNNNNNNNGC 2 cut(s) 116, 147
HpyF3I CTNAG 2 cut(s) 172, 191
HpySE526I ACGT 1 cut(s) 294
Hsp92I GRCGYC 1 cut(s) 294
Hsp92II CATG 1 cut(s) 41
LmnI GCTCC 1 cut(s) 260
LpnPI CCDG 4 cut(s) 106, 133, 225, 243
Lsp1109I GCAGC 1 cut(s) 159
MaeI CTAG 1 cut(s) 302
MaeII ACGT 1 cut(s) 294
MboII GAAGA 1 cut(s) 76
MlsI TGGCCA 1 cut(s) 119
MluNI TGGCCA 1 cut(s) 119
MlyI GAGTC 1 cut(s) 65
MmeI TCCRAC 1 cut(s) 267
MnlI CCTC 6 cut(s) 92, 114, 161, 200, 284, 324
Mox20I TGGCCA 1 cut(s) 119
MscI TGGCCA 1 cut(s) 119
MseI TTAA 1 cut(s) 219
Msp20I TGGCCA 1 cut(s) 119
MspI CCGG 1 cut(s) 212
MspR9I CCNGG 1 cut(s) 121
MvaI CCWGG 1 cut(s) 121
MwoI GCNNNNNNNGC 2 cut(s) 116, 147
NlaIII CATG 1 cut(s) 41
PflFI GACNNNGTC 1 cut(s) 179
PkrI GCNGC 1 cut(s) 149
PleI GAGTC 1 cut(s) 64
PpsI GAGTC 1 cut(s) 64
Psp6I CCWGG 1 cut(s) 119
PspGI CCWGG 1 cut(s) 119
PstNI CAGNNNCTG 1 cut(s) 59
PsyI GACNNNGTC 1 cut(s) 179
SaqAI TTAA 1 cut(s) 219
SatI GCNGC 1 cut(s) 148
SchI GAGTC 1 cut(s) 65
ScrFI CCNGG 1 cut(s) 121
SetI ASST 4 cut(s) 192, 265, 297, 316
SspMI CTAG 1 cut(s) 302
StyD4I CCNGG 1 cut(s) 119
TaaI ACNGT 2 cut(s) 115, 322
TaiI ACGT 1 cut(s) 297
TaqI TCGA 1 cut(s) 183
Tru1I TTAA 1 cut(s) 219
Tru9I TTAA 1 cut(s) 219
TseI GCWGC 1 cut(s) 147
TspDTI ATGAA 3 cut(s) 54, 221, 348
Tth111I GACNNNGTC 1 cut(s) 179
XspI CTAG 1 cut(s) 302
ZraI GACGTC 1 cut(s) 295
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.