Rroxscaffold_4G00291030

Protein of unknown function (DUF674)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000004
OG0000352
Physical Location & Seq
Reverse (-)
11455752 .. 11456925
1174 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_4G00291030.1

Sequence Viewer

Length: 720 bp
ATGGCGACCTCTAACTCCGATGCTGTAAGACTGAAGCTCCTGATTGATTCATTCAGTCAAAAGGTTCTCTTTGCTGAAGCCGGTAAGGATTTTGTGGATTTTCTTTTCACTCTTCTCTCTTTGCCTGTTGGGACTGTCATTAGGCTTCTCTCCAAGGGTGGGATGGTTGGTAGCTTTGGTAAACTGTATGAGAGTGTTGAAAATCTTGATTATACATATATCCAACCCACACTAAACAAGGATATCCTGCTCAAACCCAACGCACCAGTTGCTGGAGCTAATATCCTTAAGTTGGCCAACAACGTTGAATCAACTCAATCAAGTGCTCCAAAGGAGCTCTACATGTGTAGTTACTCTCAATCCCACGCGTACGTGACTGAAAACCCCAATGAGGAATGTCCATCGTGTTCACGCACCATGAACCGCCGAATTACTTATGTCGGGCAGCCCACTACCACAAAAGCAACTTCTGGTGCCGGCGCTGCTGGATATGTCAAAGGCGTTGTGACATACATGATAATGGATGATCTGGAGGTGAAGCCCATGTCCACCATTTCAAGCATCACTATGCTTAACAGGTTCAATATCAAGGATGTTGGGGCCCTTGAAGAGAAGGTTGTTGAACTTGGCATGGATGAGGGTGTGAAGTTGTTGAAGGAGTCTCTGCAGTCCAAATCTGTCCTAACAAATGTCTTCCTTGGGAAGAAAGCTGCTGCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF674

Protein Analysis

239

Amino Acids

25.93

Weight (kDa)

7.61

Isoelectric Point (pI)

39.05

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF674 PF05056 7 - 236 3.3e-50 Protein of unknown function (DUF674)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000352)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g24890 FvH4_7g21280 FvH4_7g21300 FvH4_7g21300 FvH4_7g21310 FvH4_7g21330 FvH4_7g21340 FvH4_7g21600 FvH4_7g21610 FvH4_7g21630
malus_domestica MD07G1190400.v1.1 MD07G1190600.v1.1
prunus_persica Prupe.2G228600_v2.0.a1 Prupe.6G198200_v2.0.a1
pyrus_communis pycom07g18010
rosa_chinensis RchiOBHm_Chr1g0365711 RchiOBHm_Chr1g0365721 RchiOBHm_Chr1g0365731 RchiOBHm_Chr1g0365991 RchiOBHm_Chr5g0044511 RchiOBHm_Chr6g0247041 RchiOBHm_Chr6g0247081
rosa_laevigata RLG00000015223 RLG00000027405 RLG00000027406 RLG00000027407 RLG00000027408 RLG00000027409 RLG00000027411 RLG00000027413 RLG00000034277
rosa_multiflora Rmu_co8279495.1_g000001 Rmu_co8358963.1_g000001 Rmu_co8520123.1_g000003 Rmu_sc0002093.1_g000019 Rmu_sc0002093.1_g000024 Rmu_sc0002093.1_g000025 Rmu_sc0002093.1_g000029 Rmu_sc0002476.1_g000002 Rmu_sc0002476.1_g000021 Rmu_sc0003466.1_g000011 Rmu_sc0004288.1_g000006 Rmu_sc0004288.1_g000007 Rmu_sc0004311.1_g000022 Rmu_sc0004311.1_g000023 Rmu_sc0004311.1_g000026 Rmu_sc0004311.1_g000033 Rmu_sc0004577.1_g000008 Rmu_sc0004645.1_g000005 Rmu_sc0004645.1_g000006 Rmu_sc0006406.1_g000011 Rmu_sc0006406.1_g000012 Rmu_sc0009967.1_g000002 Rmu_sc0011598.1_g000003 Rmu_ssc0000151.1_g000015
rosa_roxburghii Rroxscaffold_1G00036500 Rroxscaffold_3G00276050 Rroxscaffold_4G00290950 Rroxscaffold_4G00290960 Rroxscaffold_4G00290970 Rroxscaffold_4G00290980 Rroxscaffold_4G00291000 Rroxscaffold_4G00291030 Rroxscaffold_4G00291060
rosa_rugosa Rorug01G0322900 Rorug01G0323000 Rorug01G0323100 Rorug01G0323200 Rorug01G0323300 Rorug01G0323400 Rorug01G0323500 Rorug01G0323600 Rorug05G0214700 Rorug05G0522100
rosa_samantha Rh1AG332000 Rh1AG332200 Rh1AG332300 Rh1AG334700 Rh1AG334800 Rh1AG335200 Rh1CG309900 Rh1CG310000 Rh1CG310100 Rh1DG325100 Rh1DG325300 Rh1DG325500 Rh5AG299000 Rh5BG306500 Rh5DG315800 Rh6AG037200 Rh6BG031900 Rh6BG032000 Rh6CG032300 Rh6CG032400 Rh6CG033200 Rh6DG030900
rosa_wichuraiana Rw0G001530 Rw1G019070 Rw1G029470 Rw1G029480 Rw1G029490 Rw1G029500 Rw1G029510 Rw1G029700 Rw5G027640 Rw5G027670 Rw6G003160 Rw6G003190

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 473
AccB7I CCANNNNNTGG 1 cut(s) 272
AccII CGCG 1 cut(s) 368
AciI CCGC 1 cut(s) 424
AclI AACGTT 1 cut(s) 303
AcoI YGGCCR 1 cut(s) 294
AcuI CTGAAG 2 cut(s) 53, 96
AfaI GTAC 1 cut(s) 371
AfiI CCNNNNNNNGG 4 cut(s) 159, 272, 292, 391
AflII CTTAAG 1 cut(s) 287
AflIII ACRYGT 2 cut(s) 342, 366
AgsI TTSAA 7 cut(s) 200, 308, 558, 583, 608, 623, 655
AluBI AGCT 5 cut(s) 37, 174, 278, 337, 710
AluI AGCT 5 cut(s) 37, 174, 278, 337, 710
Alw21I GWGCWC 2 cut(s) 328, 339
Alw26I GTCTC 1 cut(s) 666
AlwNI CAGNNNCTG 1 cut(s) 272
AoxI GGCC 2 cut(s) 294, 600
ApaI GGGCCC 1 cut(s) 604
ApeKI GCWGC 4 cut(s) 445, 482, 710, 713
AspLEI GCGC 1 cut(s) 482
AspS9I GGNCC 2 cut(s) 600, 601
AsuHPI GGTGA 1 cut(s) 547
BaeGI GKGCMC 1 cut(s) 604
BalI TGGCCA 1 cut(s) 296
BanI GGYRCC 1 cut(s) 473
BanII GRGCYC 2 cut(s) 339, 604
BbsI GAAGAC 1 cut(s) 685
Bbv12I GWGCWC 2 cut(s) 328, 339
BbvI GCAGC 4 cut(s) 457, 469, 697, 700
BccI CCATC 2 cut(s) 157, 409
BcoDI GTCTC 1 cut(s) 666
BfmI CTRYAG 1 cut(s) 665
BfoI RGCGCY 1 cut(s) 483
BfrI CTTAAG 1 cut(s) 287
BisI GCNGC 4 cut(s) 446, 483, 711, 714
BlsI GCNGC 4 cut(s) 447, 484, 712, 715
BmgT120I GGNCC 2 cut(s) 600, 601
BmiI GGNNCC 3 cut(s) 475, 601, 602
BmsI GCATC 2 cut(s) 10, 570
BpiI GAAGAC 1 cut(s) 685
BpmI CTGGAG 2 cut(s) 294, 551
BsaAI YACGTR 1 cut(s) 373
BsaJI CCNNGG 2 cut(s) 153, 697
BsaXI ACNNNNNCTCC 2 cut(s) 21, 51
Bsc4I CCNNNNNNNGG 4 cut(s) 159, 272, 292, 391
Bse118I RCCGGY 2 cut(s) 80, 476
Bse1I ACTGG 1 cut(s) 266
BseDI CCNNGG 2 cut(s) 153, 697
BseGI GGATG 4 cut(s) 168, 529, 598, 640
BseLI CCNNNNNNNGG 4 cut(s) 159, 272, 292, 391
BseNI ACTGG 1 cut(s) 266
BseSI GKGCMC 1 cut(s) 604
BseXI GCAGC 4 cut(s) 457, 469, 697, 700
Bsh1236I CGCG 1 cut(s) 368
BshFI GGCC 2 cut(s) 296, 602
BshNI GGYRCC 1 cut(s) 473
BsiHKAI GWGCWC 2 cut(s) 328, 339
BsiSI CCGG 2 cut(s) 81, 477
BsiWI CGTACG 1 cut(s) 369
BslFI GGGAC 1 cut(s) 145
BslI CCNNNNNNNGG 4 cut(s) 159, 272, 292, 391
BsmAI GTCTC 1 cut(s) 666
BsmFI GGGAC 1 cut(s) 145
BsnI GGCC 2 cut(s) 296, 602
Bsp120I GGGCCC 1 cut(s) 600
Bsp1286I GDGCHC 3 cut(s) 328, 339, 604
Bsp143I GATC 1 cut(s) 526
BspACI CCGC 1 cut(s) 424
BspANI GGCC 2 cut(s) 296, 602
BspFNI CGCG 1 cut(s) 368
BspLI GGNNCC 3 cut(s) 475, 601, 602
BspMAI CTGCAG 1 cut(s) 669
BspT107I GGYRCC 1 cut(s) 473
BspTI CTTAAG 1 cut(s) 287
BsrFI RCCGGY 2 cut(s) 80, 476
BsrI ACTGG 1 cut(s) 266
BssAI RCCGGY 2 cut(s) 80, 476
BssECI CCNNGG 2 cut(s) 153, 697
BssMI GATC 1 cut(s) 526
BssT1I CCWWGG 2 cut(s) 153, 697
Bst4CI ACNGT 2 cut(s) 136, 186
Bst6I CTCTTC 2 cut(s) 117, 603
BstAFI CTTAAG 1 cut(s) 287
BstAPI GCANNNNNTGC 1 cut(s) 269
BstBAI YACGTR 1 cut(s) 373
BstC8I GCNNGC 1 cut(s) 478
BstF5I GGATG 4 cut(s) 168, 529, 598, 640
BstFNI CGCG 1 cut(s) 368
BstH2I RGCGCY 1 cut(s) 483
BstHHI GCGC 1 cut(s) 482
BstKTI GATC 1 cut(s) 529
BstMAI GTCTC 1 cut(s) 666
BstMBI GATC 1 cut(s) 526
BstMWI GCNNNNNNNGC 2 cut(s) 269, 482
BstNSI RCATGY 1 cut(s) 346
BstSFI CTRYAG 1 cut(s) 665
BstSLI GKGCMC 1 cut(s) 604
BstUI CGCG 1 cut(s) 368
BstV1I GCAGC 4 cut(s) 457, 469, 697, 700
BstV2I GAAGAC 1 cut(s) 685
BsuRI GGCC 2 cut(s) 296, 602
BtsCI GGATG 4 cut(s) 168, 529, 598, 640
Cac8I GCNNGC 1 cut(s) 478
CaiI CAGNNNCTG 1 cut(s) 272
CfoI GCGC 1 cut(s) 482
Cfr10I RCCGGY 2 cut(s) 80, 476
Cfr13I GGNCC 2 cut(s) 600, 601
Csp6I GTAC 1 cut(s) 370
CviAII CATG 6 cut(s) 343, 418, 514, 544, 631, 717
CviQI GTAC 1 cut(s) 370
DpnI GATC 1 cut(s) 528
DpnII GATC 1 cut(s) 526
EaeI YGGCCR 1 cut(s) 294
Eam1104I CTCTTC 2 cut(s) 117, 603
EarI CTCTTC 2 cut(s) 117, 603
Ecl136II GAGCTC 1 cut(s) 337
Eco130I CCWWGG 2 cut(s) 153, 697
Eco24I GRGCYC 2 cut(s) 339, 604
Eco32I GATATC 1 cut(s) 244
Eco53kI GAGCTC 1 cut(s) 337
Eco57I CTGAAG 2 cut(s) 53, 96
EcoICRI GAGCTC 1 cut(s) 337
EcoO109I RGGNCCY 2 cut(s) 600, 601
EcoRV GATATC 1 cut(s) 244
EcoT14I CCWWGG 2 cut(s) 153, 697
EcoT38I GRGCYC 2 cut(s) 339, 604
ErhI CCWWGG 2 cut(s) 153, 697
FaeI CATG 6 cut(s) 346, 421, 517, 547, 634, 720
FalI AAGNNNNNCTT 2 cut(s) 53, 85
FaqI GGGAC 1 cut(s) 145
FatI CATG 6 cut(s) 342, 417, 513, 543, 630, 716
Fnu4HI GCNGC 4 cut(s) 446, 483, 711, 714
FokI GGATG 4 cut(s) 175, 536, 605, 647
FriOI GRGCYC 2 cut(s) 339, 604
Fsp4HI GCNGC 4 cut(s) 446, 483, 711, 714
GlaI GCGC 1 cut(s) 481
GluI GCNGC 4 cut(s) 446, 483, 711, 714
GsuI CTGGAG 2 cut(s) 294, 551
HaeII RGCGCY 1 cut(s) 483
HaeIII GGCC 2 cut(s) 296, 602
HapII CCGG 2 cut(s) 81, 477
HhaI GCGC 1 cut(s) 482
Hin1II CATG 6 cut(s) 346, 421, 517, 547, 634, 720
Hin6I GCGC 1 cut(s) 480
HinP1I GCGC 1 cut(s) 480
HinfI GANTC 3 cut(s) 47, 308, 659
HpaII CCGG 2 cut(s) 81, 477
HphI GGTGA 1 cut(s) 547
Hpy166II GTNNAC 3 cut(s) 182, 410, 549
Hpy188I TCNGA 1 cut(s) 19
Hpy188III TCNNGA 3 cut(s) 40, 206, 530
Hpy8I GTNNAC 3 cut(s) 182, 410, 549
HpyAV CCTTC 2 cut(s) 607, 649
HpyCH4III ACNGT 2 cut(s) 136, 186
HpyCH4IV ACGT 2 cut(s) 303, 372
HpyCH4V TGCA 2 cut(s) 667, 716
HpyF10VI GCNNNNNNNGC 2 cut(s) 269, 482
HpySE526I ACGT 2 cut(s) 303, 372
Hsp92II CATG 6 cut(s) 346, 421, 517, 547, 634, 720
HspAI GCGC 1 cut(s) 480
KroI GCCGGC 1 cut(s) 476
KroNI GCCGGC 1 cut(s) 478
Kzo9I GATC 1 cut(s) 526
LmnI GCTCC 4 cut(s) 42, 275, 331, 334
Lsp1109I GCAGC 4 cut(s) 457, 469, 697, 700
LweI GCATC 2 cut(s) 10, 570
MaeII ACGT 2 cut(s) 303, 372
MaeIII GTNAC 3 cut(s) 350, 373, 505
MalI GATC 1 cut(s) 528
MboI GATC 1 cut(s) 526
MboII GAAGA 4 cut(s) 104, 620, 685, 715
MhlI GDGCHC 3 cut(s) 328, 339, 604
MlsI TGGCCA 1 cut(s) 296
MluCI AATT 1 cut(s) 429
MluI ACGCGT 1 cut(s) 366
MluNI TGGCCA 1 cut(s) 296
MlyI GAGTC 1 cut(s) 668
MmeI TCCRAC 1 cut(s) 247
MnlI CCTC 4 cut(s) 19, 385, 526, 631
Mox20I TGGCCA 1 cut(s) 296
MroNI GCCGGC 1 cut(s) 476
MscI TGGCCA 1 cut(s) 296
MseI TTAA 2 cut(s) 288, 573
MslI CAYNNNNRTG 2 cut(s) 518, 566
Msp20I TGGCCA 1 cut(s) 296
MspCI CTTAAG 1 cut(s) 287
MspI CCGG 2 cut(s) 81, 477
MvnI CGCG 1 cut(s) 368
MwoI GCNNNNNNNGC 2 cut(s) 269, 482
NaeI GCCGGC 1 cut(s) 478
NdeII GATC 1 cut(s) 526
NgoMIV GCCGGC 1 cut(s) 476
NlaIII CATG 6 cut(s) 346, 421, 517, 547, 634, 720
NlaIV GGNNCC 3 cut(s) 475, 601, 602
NmuCI GTSAC 2 cut(s) 373, 505
NspI RCATGY 1 cut(s) 346
PciI ACATGT 1 cut(s) 342
PdiI GCCGGC 1 cut(s) 478
PfeI GAWTC 2 cut(s) 47, 308
Pfl23II CGTACG 1 cut(s) 369
PflMI CCANNNNNTGG 1 cut(s) 272
PkrI GCNGC 4 cut(s) 447, 484, 712, 715
PleI GAGTC 1 cut(s) 667
PpsI GAGTC 1 cut(s) 667
Ppu21I YACGTR 1 cut(s) 373
PscI ACATGT 1 cut(s) 342
Psp124BI GAGCTC 1 cut(s) 339
Psp1406I AACGTT 1 cut(s) 303
PspLI CGTACG 1 cut(s) 369
PspN4I GGNNCC 3 cut(s) 475, 601, 602
PspOMI GGGCCC 1 cut(s) 600
PspPI GGNCC 2 cut(s) 600, 601
PstI CTGCAG 1 cut(s) 669
PstNI CAGNNNCTG 1 cut(s) 272
RsaI GTAC 1 cut(s) 371
RsaNI GTAC 1 cut(s) 370
RseI CAYNNNNRTG 2 cut(s) 518, 566
SacI GAGCTC 1 cut(s) 339
SaqAI TTAA 2 cut(s) 288, 573
SatI GCNGC 4 cut(s) 446, 483, 711, 714
Sau3AI GATC 1 cut(s) 526
Sau96I GGNCC 2 cut(s) 600, 601
SchI GAGTC 1 cut(s) 668
SduI GDGCHC 3 cut(s) 328, 339, 604
SfaNI GCATC 2 cut(s) 10, 570
SfcI CTRYAG 1 cut(s) 665
SmiMI CAYNNNNRTG 2 cut(s) 518, 566
SmlI CTYRAG 1 cut(s) 287
SmoI CTYRAG 1 cut(s) 287
Sse9I AATT 1 cut(s) 429
SsiI CCGC 1 cut(s) 424
SstI GAGCTC 1 cut(s) 339
StyI CCWWGG 2 cut(s) 153, 697
TaaI ACNGT 2 cut(s) 136, 186
TaiI ACGT 2 cut(s) 306, 375
TasI AATT 1 cut(s) 429
TfiI GAWTC 2 cut(s) 47, 308
Tru1I TTAA 2 cut(s) 288, 573
Tru9I TTAA 2 cut(s) 288, 573
TseFI GTSAC 2 cut(s) 373, 505
TseI GCWGC 4 cut(s) 445, 482, 710, 713
Tsp45I GTSAC 2 cut(s) 373, 505
TspDTI ATGAA 2 cut(s) 39, 434
Van91I CCANNNNNTGG 1 cut(s) 272
Vha464I CTTAAG 1 cut(s) 287
XceI RCATGY 1 cut(s) 346
XcmI CCANNNNNNNNNTGG 1 cut(s) 160
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.