RLG00000027411

Protein of unknown function (DUF674)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr6
OG0000352
Physical Location & Seq
Reverse (-)
11327497 .. 11328426
930 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000027411

Sequence Viewer

Length: 711 bp
ATGGCGACCTCTAACTCCGGTGCTGTTAGCCTGAAGCTCCTAATTGATTCCAAGAATCAAAAGGTTCTCTTTGCTGAAGCCGGTAAGGATTTTGTGGATTTTCTTTTCACTCTTCTCTCTTTGCCTGTTGGGACTGTCATTAGGCTTCTCTCCAAGGGTGGGATGGTTGGTAGCTTTGGTAAACTGTATGAGAGTGTTGAAAATCTTGATTCTACATATATCCAACCCACACTAAACAAGGATATCCTGCTCAAACCCAACGCACCAGTTGCTGGATCTAATATCCTCAAGTTGGCCAACAACGTTGAATCAAGTGCTCCAAAGGAGCTCTACATGTGTAGTTACTCTCAATCCCACGCGTACGTGACTGAAAACCCCAATGAGAAATGTCCATCGTGTTCACACACCATGAACCGACGAATTACTTATGTCGGGCAGCCGACTACCACAGAAGCAACTTCTGGTGCCGGCGTTGCTGGATATGTCAAAGGCGTTGTGACATACATGATAATGGATGATCTGGAGGTGAAGCCCATGTCCACCATTTCAAGCATCACCATGCTGAACAGGTTCAATATCAAGGATGTTGGGGCCCTTGAAGAGAAGGTTGTTGAACTAGGCATGGATGAGGGTGTGAAGTTGTTGAAGGAGTCTCTGCAGTCCAAATCTGTGCTAACAAATGTCTTCCTTGGGAAGAAAGCTGCTGCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF674

Protein Analysis

237

Amino Acids

25.44

Weight (kDa)

7.63

Isoelectric Point (pI)

34.72

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF674 PF05056 8 - 233 3.6e-53 Protein of unknown function (DUF674)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000352)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g24890 FvH4_7g21280 FvH4_7g21300 FvH4_7g21300 FvH4_7g21310 FvH4_7g21330 FvH4_7g21340 FvH4_7g21600 FvH4_7g21610 FvH4_7g21630
malus_domestica MD07G1190400.v1.1 MD07G1190600.v1.1
prunus_persica Prupe.2G228600_v2.0.a1 Prupe.6G198200_v2.0.a1
pyrus_communis pycom07g18010
rosa_chinensis RchiOBHm_Chr1g0365711 RchiOBHm_Chr1g0365721 RchiOBHm_Chr1g0365731 RchiOBHm_Chr1g0365991 RchiOBHm_Chr5g0044511 RchiOBHm_Chr6g0247041 RchiOBHm_Chr6g0247081
rosa_laevigata RLG00000015223 RLG00000027405 RLG00000027406 RLG00000027407 RLG00000027408 RLG00000027409 RLG00000027411 RLG00000027413 RLG00000034277
rosa_multiflora Rmu_co8279495.1_g000001 Rmu_co8358963.1_g000001 Rmu_co8520123.1_g000003 Rmu_sc0002093.1_g000019 Rmu_sc0002093.1_g000024 Rmu_sc0002093.1_g000025 Rmu_sc0002093.1_g000029 Rmu_sc0002476.1_g000002 Rmu_sc0002476.1_g000021 Rmu_sc0003466.1_g000011 Rmu_sc0004288.1_g000006 Rmu_sc0004288.1_g000007 Rmu_sc0004311.1_g000022 Rmu_sc0004311.1_g000023 Rmu_sc0004311.1_g000026 Rmu_sc0004311.1_g000033 Rmu_sc0004577.1_g000008 Rmu_sc0004645.1_g000005 Rmu_sc0004645.1_g000006 Rmu_sc0006406.1_g000011 Rmu_sc0006406.1_g000012 Rmu_sc0009967.1_g000002 Rmu_sc0011598.1_g000003 Rmu_ssc0000151.1_g000015
rosa_roxburghii Rroxscaffold_1G00036500 Rroxscaffold_3G00276050 Rroxscaffold_4G00290950 Rroxscaffold_4G00290960 Rroxscaffold_4G00290970 Rroxscaffold_4G00290980 Rroxscaffold_4G00291000 Rroxscaffold_4G00291030 Rroxscaffold_4G00291060
rosa_rugosa Rorug01G0322900 Rorug01G0323000 Rorug01G0323100 Rorug01G0323200 Rorug01G0323300 Rorug01G0323400 Rorug01G0323500 Rorug01G0323600 Rorug05G0214700 Rorug05G0522100
rosa_samantha Rh1AG332000 Rh1AG332200 Rh1AG332300 Rh1AG334700 Rh1AG334800 Rh1AG335200 Rh1CG309900 Rh1CG310000 Rh1CG310100 Rh1DG325100 Rh1DG325300 Rh1DG325500 Rh5AG299000 Rh5BG306500 Rh5DG315800 Rh6AG037200 Rh6BG031900 Rh6BG032000 Rh6CG032300 Rh6CG032400 Rh6CG033200 Rh6DG030900
rosa_wichuraiana Rw0G001530 Rw1G019070 Rw1G029470 Rw1G029480 Rw1G029490 Rw1G029500 Rw1G029510 Rw1G029700 Rw5G027640 Rw5G027670 Rw6G003160 Rw6G003190

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 464
AccB7I CCANNNNNTGG 1 cut(s) 272
AccII CGCG 1 cut(s) 359
AclI AACGTT 1 cut(s) 303
AclWI GGATC 1 cut(s) 283
AcoI YGGCCR 1 cut(s) 294
AcuI CTGAAG 2 cut(s) 53, 96
AfaI GTAC 1 cut(s) 362
AfiI CCNNNNNNNGG 3 cut(s) 159, 272, 292
AflIII ACRYGT 2 cut(s) 333, 357
AgsI TTSAA 7 cut(s) 200, 308, 549, 574, 599, 614, 646
AluBI AGCT 4 cut(s) 37, 174, 328, 701
AluI AGCT 4 cut(s) 37, 174, 328, 701
Alw21I GWGCWC 2 cut(s) 319, 330
Alw26I GTCTC 1 cut(s) 657
AlwI GGATC 1 cut(s) 283
AlwNI CAGNNNCTG 1 cut(s) 272
AoxI GGCC 2 cut(s) 294, 591
ApaI GGGCCC 1 cut(s) 595
ApeKI GCWGC 3 cut(s) 436, 701, 704
Asp700I GAANNNNTTC 1 cut(s) 569
AspS9I GGNCC 2 cut(s) 591, 592
AsuHPI GGTGA 2 cut(s) 538, 547
BaeGI GKGCMC 1 cut(s) 595
BalI TGGCCA 1 cut(s) 296
BanI GGYRCC 1 cut(s) 464
BanII GRGCYC 2 cut(s) 330, 595
BbsI GAAGAC 1 cut(s) 676
Bbv12I GWGCWC 2 cut(s) 319, 330
BbvI GCAGC 3 cut(s) 448, 688, 691
BccI CCATC 2 cut(s) 157, 400
BcoDI GTCTC 1 cut(s) 657
BfaI CTAG 1 cut(s) 617
BfmI CTRYAG 1 cut(s) 656
BisI GCNGC 3 cut(s) 437, 702, 705
BlsI GCNGC 3 cut(s) 438, 703, 706
BmgT120I GGNCC 2 cut(s) 591, 592
BmiI GGNNCC 3 cut(s) 466, 592, 593
BmsI GCATC 1 cut(s) 561
BpiI GAAGAC 1 cut(s) 676
BpmI CTGGAG 1 cut(s) 542
BpuEI CTTGAG 1 cut(s) 272
BsaAI YACGTR 1 cut(s) 364
BsaJI CCNNGG 2 cut(s) 153, 688
BsaWI WCCGGW 1 cut(s) 17
Bsc4I CCNNNNNNNGG 3 cut(s) 159, 272, 292
Bse118I RCCGGY 2 cut(s) 80, 467
Bse1I ACTGG 1 cut(s) 266
BseDI CCNNGG 2 cut(s) 153, 688
BseGI GGATG 4 cut(s) 168, 520, 589, 631
BseLI CCNNNNNNNGG 3 cut(s) 159, 272, 292
BseNI ACTGG 1 cut(s) 266
BseSI GKGCMC 1 cut(s) 595
BseXI GCAGC 3 cut(s) 448, 688, 691
Bsh1236I CGCG 1 cut(s) 359
BshFI GGCC 2 cut(s) 296, 593
BshNI GGYRCC 1 cut(s) 464
BsiHKAI GWGCWC 2 cut(s) 319, 330
BsiSI CCGG 3 cut(s) 18, 81, 468
BsiWI CGTACG 1 cut(s) 360
BslFI GGGAC 1 cut(s) 145
BslI CCNNNNNNNGG 3 cut(s) 159, 272, 292
BsmAI GTCTC 1 cut(s) 657
BsmFI GGGAC 1 cut(s) 145
BsnI GGCC 2 cut(s) 296, 593
Bsp120I GGGCCC 1 cut(s) 591
Bsp1286I GDGCHC 3 cut(s) 319, 330, 595
Bsp143I GATC 2 cut(s) 275, 517
BspANI GGCC 2 cut(s) 296, 593
BspFNI CGCG 1 cut(s) 359
BspLI GGNNCC 3 cut(s) 466, 592, 593
BspMAI CTGCAG 1 cut(s) 660
BspPI GGATC 1 cut(s) 283
BspT107I GGYRCC 1 cut(s) 464
BsrFI RCCGGY 2 cut(s) 80, 467
BsrI ACTGG 1 cut(s) 266
BssAI RCCGGY 2 cut(s) 80, 467
BssECI CCNNGG 2 cut(s) 153, 688
BssMI GATC 2 cut(s) 275, 517
BssT1I CCWWGG 2 cut(s) 153, 688
Bst4CI ACNGT 2 cut(s) 136, 186
Bst6I CTCTTC 2 cut(s) 117, 594
BstAPI GCANNNNNTGC 1 cut(s) 269
BstBAI YACGTR 1 cut(s) 364
BstC8I GCNNGC 1 cut(s) 469
BstF5I GGATG 4 cut(s) 168, 520, 589, 631
BstFNI CGCG 1 cut(s) 359
BstKTI GATC 2 cut(s) 278, 520
BstMAI GTCTC 1 cut(s) 657
BstMBI GATC 2 cut(s) 275, 517
BstMWI GCNNNNNNNGC 2 cut(s) 269, 473
BstNSI RCATGY 1 cut(s) 337
BstSFI CTRYAG 1 cut(s) 656
BstSLI GKGCMC 1 cut(s) 595
BstUI CGCG 1 cut(s) 359
BstV1I GCAGC 3 cut(s) 448, 688, 691
BstV2I GAAGAC 1 cut(s) 676
BstX2I RGATCY 1 cut(s) 275
BstYI RGATCY 1 cut(s) 275
BsuRI GGCC 2 cut(s) 296, 593
BtsCI GGATG 4 cut(s) 168, 520, 589, 631
Cac8I GCNNGC 1 cut(s) 469
CaiI CAGNNNCTG 1 cut(s) 272
Cfr10I RCCGGY 2 cut(s) 80, 467
Cfr13I GGNCC 2 cut(s) 591, 592
Csp6I GTAC 1 cut(s) 361
CviAII CATG 7 cut(s) 334, 409, 505, 535, 559, 622, 708
CviQI GTAC 1 cut(s) 361
DpnI GATC 2 cut(s) 277, 519
DpnII GATC 2 cut(s) 275, 517
EaeI YGGCCR 1 cut(s) 294
Eam1104I CTCTTC 2 cut(s) 117, 594
EarI CTCTTC 2 cut(s) 117, 594
Ecl136II GAGCTC 1 cut(s) 328
Eco130I CCWWGG 2 cut(s) 153, 688
Eco24I GRGCYC 2 cut(s) 330, 595
Eco32I GATATC 1 cut(s) 244
Eco53kI GAGCTC 1 cut(s) 328
Eco57I CTGAAG 2 cut(s) 53, 96
EcoICRI GAGCTC 1 cut(s) 328
EcoO109I RGGNCCY 2 cut(s) 591, 592
EcoRV GATATC 1 cut(s) 244
EcoT14I CCWWGG 2 cut(s) 153, 688
EcoT38I GRGCYC 2 cut(s) 330, 595
ErhI CCWWGG 2 cut(s) 153, 688
FaeI CATG 7 cut(s) 337, 412, 508, 538, 562, 625, 711
FalI AAGNNNNNCTT 2 cut(s) 53, 85
FaqI GGGAC 1 cut(s) 145
FatI CATG 7 cut(s) 333, 408, 504, 534, 558, 621, 707
Fnu4HI GCNGC 3 cut(s) 437, 702, 705
FokI GGATG 4 cut(s) 175, 527, 596, 638
FriOI GRGCYC 2 cut(s) 330, 595
Fsp4HI GCNGC 3 cut(s) 437, 702, 705
FspBI CTAG 1 cut(s) 617
GluI GCNGC 3 cut(s) 437, 702, 705
GsuI CTGGAG 1 cut(s) 542
HaeIII GGCC 2 cut(s) 296, 593
HapII CCGG 3 cut(s) 18, 81, 468
Hin1II CATG 7 cut(s) 337, 412, 508, 538, 562, 625, 711
HinfI GANTC 5 cut(s) 47, 55, 209, 308, 650
HpaII CCGG 3 cut(s) 18, 81, 468
HphI GGTGA 2 cut(s) 538, 547
Hpy166II GTNNAC 3 cut(s) 182, 401, 540
Hpy188III TCNNGA 2 cut(s) 206, 521
Hpy8I GTNNAC 3 cut(s) 182, 401, 540
Hpy99I CGWCG 1 cut(s) 420
HpyAV CCTTC 2 cut(s) 598, 640
HpyCH4III ACNGT 2 cut(s) 136, 186
HpyCH4IV ACGT 2 cut(s) 303, 363
HpyCH4V TGCA 2 cut(s) 658, 707
HpyF10VI GCNNNNNNNGC 2 cut(s) 269, 473
HpySE526I ACGT 2 cut(s) 303, 363
Hsp92II CATG 7 cut(s) 337, 412, 508, 538, 562, 625, 711
KroI GCCGGC 1 cut(s) 467
KroNI GCCGGC 1 cut(s) 469
Kzo9I GATC 2 cut(s) 275, 517
LmnI GCTCC 3 cut(s) 42, 322, 325
Lsp1109I GCAGC 3 cut(s) 448, 688, 691
LweI GCATC 1 cut(s) 561
MaeI CTAG 1 cut(s) 617
MaeII ACGT 2 cut(s) 303, 363
MaeIII GTNAC 3 cut(s) 341, 364, 496
MalI GATC 2 cut(s) 277, 519
MboI GATC 2 cut(s) 275, 517
MboII GAAGA 4 cut(s) 104, 611, 676, 706
MflI RGATCY 1 cut(s) 275
MhlI GDGCHC 3 cut(s) 319, 330, 595
MlsI TGGCCA 1 cut(s) 296
MluCI AATT 2 cut(s) 42, 420
MluI ACGCGT 1 cut(s) 357
MluNI TGGCCA 1 cut(s) 296
MlyI GAGTC 1 cut(s) 659
MmeI TCCRAC 1 cut(s) 247
MnlI CCTC 4 cut(s) 19, 296, 517, 622
Mox20I TGGCCA 1 cut(s) 296
MroNI GCCGGC 1 cut(s) 467
MroXI GAANNNNTTC 1 cut(s) 569
MscI TGGCCA 1 cut(s) 296
MslI CAYNNNNRTG 2 cut(s) 509, 557
Msp20I TGGCCA 1 cut(s) 296
MspI CCGG 3 cut(s) 18, 81, 468
MvnI CGCG 1 cut(s) 359
MwoI GCNNNNNNNGC 2 cut(s) 269, 473
NaeI GCCGGC 1 cut(s) 469
NdeII GATC 2 cut(s) 275, 517
NgoMIV GCCGGC 1 cut(s) 467
NlaIII CATG 7 cut(s) 337, 412, 508, 538, 562, 625, 711
NlaIV GGNNCC 3 cut(s) 466, 592, 593
NmuCI GTSAC 2 cut(s) 364, 496
NspI RCATGY 1 cut(s) 337
PciI ACATGT 1 cut(s) 333
PdiI GCCGGC 1 cut(s) 469
PdmI GAANNNNTTC 1 cut(s) 569
PfeI GAWTC 4 cut(s) 47, 55, 209, 308
Pfl23II CGTACG 1 cut(s) 360
PflMI CCANNNNNTGG 1 cut(s) 272
PkrI GCNGC 3 cut(s) 438, 703, 706
PleI GAGTC 1 cut(s) 658
PpsI GAGTC 1 cut(s) 658
Ppu21I YACGTR 1 cut(s) 364
PscI ACATGT 1 cut(s) 333
Psp124BI GAGCTC 1 cut(s) 330
Psp1406I AACGTT 1 cut(s) 303
PspLI CGTACG 1 cut(s) 360
PspN4I GGNNCC 3 cut(s) 466, 592, 593
PspOMI GGGCCC 1 cut(s) 591
PspPI GGNCC 2 cut(s) 591, 592
PstI CTGCAG 1 cut(s) 660
PstNI CAGNNNCTG 1 cut(s) 272
PsuI RGATCY 1 cut(s) 275
RsaI GTAC 1 cut(s) 362
RsaNI GTAC 1 cut(s) 361
RseI CAYNNNNRTG 2 cut(s) 509, 557
SacI GAGCTC 1 cut(s) 330
SatI GCNGC 3 cut(s) 437, 702, 705
Sau3AI GATC 2 cut(s) 275, 517
Sau96I GGNCC 2 cut(s) 591, 592
SchI GAGTC 1 cut(s) 659
SduI GDGCHC 3 cut(s) 319, 330, 595
SfaNI GCATC 1 cut(s) 561
SfcI CTRYAG 1 cut(s) 656
SmiMI CAYNNNNRTG 2 cut(s) 509, 557
SmlI CTYRAG 1 cut(s) 287
SmoI CTYRAG 1 cut(s) 287
Sse9I AATT 2 cut(s) 42, 420
SspMI CTAG 1 cut(s) 617
SstI GAGCTC 1 cut(s) 330
StyI CCWWGG 2 cut(s) 153, 688
TaaI ACNGT 2 cut(s) 136, 186
TaiI ACGT 2 cut(s) 306, 366
TasI AATT 2 cut(s) 42, 420
TfiI GAWTC 4 cut(s) 47, 55, 209, 308
TseFI GTSAC 2 cut(s) 364, 496
TseI GCWGC 3 cut(s) 436, 701, 704
Tsp45I GTSAC 2 cut(s) 364, 496
TspDTI ATGAA 1 cut(s) 425
Van91I CCANNNNNTGG 1 cut(s) 272
XceI RCATGY 1 cut(s) 337
XcmI CCANNNNNNNNNTGG 1 cut(s) 160
XmnI GAANNNNTTC 1 cut(s) 569
XspI CTAG 1 cut(s) 617
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.