RchiOBHm_Chr1g0365721

Protein of unknown function (DUF674)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
OG0000352
Physical Location & Seq
Forward (+)
56557059 .. 56561492
4434 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ59033

Sequence Viewer

Length: 750 bp
ATGATAATACGTATATGTGTGGTTTGCGCCTCGTCAATGGAAACCCCCAACTCTAAAACCCTCACCGTGAAGCTCCTCGTCGACAAAAGAAGCCAGAAGGTTTTGTTCGCCGAAGCCGGCAAGGACTTCGTGGACTTTCTCTTCGCTCTTTTATCTTTCCCCGTCGGCACTCTGGTCCGGCTTCTCTCCAAAAACGGCATGGTCGGAAGCCTAGGCAAACTCTACGAGAGCTTCGAAAATCTCAACGACATGTATATGCAACCCAATCTCAACAGAGAAATCCTCCTCAAACCCAAAGAACCAGCCGGTGTTCCTAATAACCTAGGCTTGTTGACCAACGTGGAATCTCCAACCATCTATCACTGTTCAAGAAGAGGCTATTCTGATAATCACCAATATGTTTCCGACGACCCTAAAGCTACATGCCCGTCGTGCCCGTGCAAAATGAGTGCCAAGGCGAGTTATGTGTCTCCAGCCGGTGTTACAAAGACAGAAGAAGGGTTTGTGAAAGGGGTTGTTACATATATTGTAACCGATGATTTAGAGGTGAAACCTAATGTTACCATTGCCAGTATCCTTCAGCTGGAAAGGTTCAATGTCAAGTGTATTTGTGACCTTGAAGAGAAGGTCGTCAATGTAGGCATGGATGAGGGTGTGAAGTTGCTTAAGGAATCCTTGCAGTCAAAGTCAGTTCTAACCAATGTGTTTCTGAGAGGAATGACTATATCAGATCTAAAACCAGTACTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF674

Protein Analysis

249

Amino Acids

27.45

Weight (kDa)

8.04

Isoelectric Point (pI)

36.33

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF674 PF05056 18 - 238 1.4e-42 Protein of unknown function (DUF674)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000352)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g24890 FvH4_7g21280 FvH4_7g21300 FvH4_7g21300 FvH4_7g21310 FvH4_7g21330 FvH4_7g21340 FvH4_7g21600 FvH4_7g21610 FvH4_7g21630
malus_domestica MD07G1190400.v1.1 MD07G1190600.v1.1
prunus_persica Prupe.2G228600_v2.0.a1 Prupe.6G198200_v2.0.a1
pyrus_communis pycom07g18010
rosa_chinensis RchiOBHm_Chr1g0365711 RchiOBHm_Chr1g0365721 RchiOBHm_Chr1g0365731 RchiOBHm_Chr1g0365991 RchiOBHm_Chr5g0044511 RchiOBHm_Chr6g0247041 RchiOBHm_Chr6g0247081
rosa_laevigata RLG00000015223 RLG00000027405 RLG00000027406 RLG00000027407 RLG00000027408 RLG00000027409 RLG00000027411 RLG00000027413 RLG00000034277
rosa_multiflora Rmu_co8279495.1_g000001 Rmu_co8358963.1_g000001 Rmu_co8520123.1_g000003 Rmu_sc0002093.1_g000019 Rmu_sc0002093.1_g000024 Rmu_sc0002093.1_g000025 Rmu_sc0002093.1_g000029 Rmu_sc0002476.1_g000002 Rmu_sc0002476.1_g000021 Rmu_sc0003466.1_g000011 Rmu_sc0004288.1_g000006 Rmu_sc0004288.1_g000007 Rmu_sc0004311.1_g000022 Rmu_sc0004311.1_g000023 Rmu_sc0004311.1_g000026 Rmu_sc0004311.1_g000033 Rmu_sc0004577.1_g000008 Rmu_sc0004645.1_g000005 Rmu_sc0004645.1_g000006 Rmu_sc0006406.1_g000011 Rmu_sc0006406.1_g000012 Rmu_sc0009967.1_g000002 Rmu_sc0011598.1_g000003 Rmu_ssc0000151.1_g000015
rosa_roxburghii Rroxscaffold_1G00036500 Rroxscaffold_3G00276050 Rroxscaffold_4G00290950 Rroxscaffold_4G00290960 Rroxscaffold_4G00290970 Rroxscaffold_4G00290980 Rroxscaffold_4G00291000 Rroxscaffold_4G00291030 Rroxscaffold_4G00291060
rosa_rugosa Rorug01G0322900 Rorug01G0323000 Rorug01G0323100 Rorug01G0323200 Rorug01G0323300 Rorug01G0323400 Rorug01G0323500 Rorug01G0323600 Rorug05G0214700 Rorug05G0522100
rosa_samantha Rh1AG332000 Rh1AG332200 Rh1AG332300 Rh1AG334700 Rh1AG334800 Rh1AG335200 Rh1CG309900 Rh1CG310000 Rh1CG310100 Rh1DG325100 Rh1DG325300 Rh1DG325500 Rh5AG299000 Rh5BG306500 Rh5DG315800 Rh6AG037200 Rh6BG031900 Rh6BG032000 Rh6CG032300 Rh6CG032400 Rh6CG033200 Rh6DG030900
rosa_wichuraiana Rw0G001530 Rw1G019070 Rw1G029470 Rw1G029480 Rw1G029490 Rw1G029500 Rw1G029510 Rw1G029700 Rw5G027640 Rw5G027670 Rw6G003160 Rw6G003190

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 81
AcuI CTGAAG 1 cut(s) 563
AfaI GTAC 1 cut(s) 744
AfiI CCNNNNNNNGG 1 cut(s) 583
AflII CTTAAG 1 cut(s) 665
AflIII ACRYGT 1 cut(s) 249
AgsI TTSAA 3 cut(s) 369, 595, 620
AluBI AGCT 4 cut(s) 73, 231, 419, 583
AluI AGCT 4 cut(s) 73, 231, 419, 583
Alw26I GTCTC 1 cut(s) 474
ArsI GACNNNNNNTTYG 2 cut(s) 125, 157
AspA2I CCTAGG 2 cut(s) 211, 322
AspLEI GCGC 1 cut(s) 29
AspS9I GGNCC 1 cut(s) 175
AsuHPI GGTGA 3 cut(s) 55, 383, 559
AsuII TTCGAA 1 cut(s) 234
AvaII GGWCC 1 cut(s) 175
AvrII CCTAGG 2 cut(s) 211, 322
BaeGI GKGCMC 1 cut(s) 437
BccI CCATC 1 cut(s) 362
BceAI ACGGC 1 cut(s) 211
BcgI CGANNNNNNTGC 2 cut(s) 109, 143
BciVI GTATCC 1 cut(s) 584
BcoDI GTCTC 1 cut(s) 474
BfaI CTAG 2 cut(s) 212, 323
BfrI CTTAAG 1 cut(s) 665
BfuI GTATCC 1 cut(s) 584
BglII AGATCT 1 cut(s) 730
BlnI CCTAGG 2 cut(s) 211, 322
BmcAI AGTACT 1 cut(s) 744
Bme18I GGWCC 1 cut(s) 175
BmgT120I GGNCC 1 cut(s) 175
BplI GAGNNNNNCTC 2 cut(s) 267, 299
BpmI CTGGAG 1 cut(s) 456
Bpu14I TTCGAA 1 cut(s) 234
BsaAI YACGTR 1 cut(s) 11
BsaJI CCNNGG 3 cut(s) 211, 322, 453
Bsc4I CCNNNNNNNGG 1 cut(s) 583
Bse118I RCCGGY 3 cut(s) 116, 305, 476
Bse1I ACTGG 2 cut(s) 570, 740
Bse3DI GCAATG 1 cut(s) 564
BseDI CCNNGG 3 cut(s) 211, 322, 453
BseGI GGATG 1 cut(s) 652
BseLI CCNNNNNNNGG 1 cut(s) 583
BseMI GCAATG 1 cut(s) 564
BseMII CTCAG 1 cut(s) 701
BseNI ACTGG 2 cut(s) 570, 740
BseRI GAGGAG 2 cut(s) 65, 275
BseSI GKGCMC 1 cut(s) 437
BsiSI CCGG 4 cut(s) 117, 178, 306, 477
BslI CCNNNNNNNGG 1 cut(s) 583
BsmAI GTCTC 1 cut(s) 474
Bsp119I TTCGAA 1 cut(s) 234
Bsp1286I GDGCHC 1 cut(s) 437
Bsp143I GATC 1 cut(s) 730
BspCNI CTCAG 1 cut(s) 702
BspT104I TTCGAA 1 cut(s) 234
BspTI CTTAAG 1 cut(s) 665
BsrDI GCAATG 1 cut(s) 564
BsrFI RCCGGY 3 cut(s) 116, 305, 476
BsrI ACTGG 2 cut(s) 570, 740
BssAI RCCGGY 3 cut(s) 116, 305, 476
BssECI CCNNGG 3 cut(s) 211, 322, 453
BssMI GATC 1 cut(s) 730
BssT1I CCWWGG 3 cut(s) 211, 322, 453
Bst4CI ACNGT 2 cut(s) 67, 365
Bst6I CTCTTC 3 cut(s) 146, 367, 615
BstAFI CTTAAG 1 cut(s) 665
BstBAI YACGTR 1 cut(s) 11
BstBI TTCGAA 1 cut(s) 234
BstC8I GCNNGC 1 cut(s) 118
BstDEI CTNAG 1 cut(s) 710
BstF5I GGATG 1 cut(s) 652
BstHHI GCGC 1 cut(s) 29
BstKTI GATC 1 cut(s) 733
BstMAI GTCTC 1 cut(s) 474
BstMBI GATC 1 cut(s) 730
BstMWI GCNNNNNNNGC 1 cut(s) 432
BstNSI RCATGY 2 cut(s) 253, 426
BstSLI GKGCMC 1 cut(s) 437
BstSNI TACGTA 1 cut(s) 11
BstX2I RGATCY 1 cut(s) 730
BstYI RGATCY 1 cut(s) 730
BsuI GTATCC 1 cut(s) 584
BtsCI GGATG 1 cut(s) 652
BtsIMutI CAGTG 1 cut(s) 361
Cac8I GCNNGC 1 cut(s) 118
CfoI GCGC 1 cut(s) 29
Cfr10I RCCGGY 3 cut(s) 116, 305, 476
Cfr13I GGNCC 1 cut(s) 175
Csp6I GTAC 1 cut(s) 743
CviAII CATG 4 cut(s) 199, 250, 423, 643
CviQI GTAC 1 cut(s) 743
DdeI CTNAG 1 cut(s) 710
DpnI GATC 1 cut(s) 732
DpnII GATC 1 cut(s) 730
Eam1104I CTCTTC 3 cut(s) 146, 367, 615
EarI CTCTTC 3 cut(s) 146, 367, 615
Eco105I TACGTA 1 cut(s) 11
Eco130I CCWWGG 3 cut(s) 211, 322, 453
Eco47I GGWCC 1 cut(s) 175
Eco57I CTGAAG 1 cut(s) 563
EcoT14I CCWWGG 3 cut(s) 211, 322, 453
ErhI CCWWGG 3 cut(s) 211, 322, 453
FaeI CATG 4 cut(s) 202, 253, 426, 646
FalI AAGNNNNNCTT 2 cut(s) 659, 691
FatI CATG 4 cut(s) 198, 249, 422, 642
FblI GTMKAC 1 cut(s) 81
FokI GGATG 1 cut(s) 659
FspBI CTAG 2 cut(s) 212, 323
GlaI GCGC 1 cut(s) 28
GsuI CTGGAG 1 cut(s) 456
HapII CCGG 4 cut(s) 117, 178, 306, 477
HhaI GCGC 1 cut(s) 29
Hin1II CATG 4 cut(s) 202, 253, 426, 646
Hin6I GCGC 1 cut(s) 27
HinP1I GCGC 1 cut(s) 27
HincII GTYRAC 2 cut(s) 82, 333
HindII GTYRAC 2 cut(s) 82, 333
HinfI GANTC 2 cut(s) 344, 671
HpaII CCGG 4 cut(s) 117, 178, 306, 477
HphI GGTGA 3 cut(s) 55, 383, 559
Hpy166II GTNNAC 3 cut(s) 82, 133, 333
Hpy188I TCNGA 5 cut(s) 206, 385, 406, 711, 730
Hpy188III TCNNGA 1 cut(s) 369
Hpy8I GTNNAC 3 cut(s) 82, 133, 333
Hpy99I CGWCG 4 cut(s) 83, 167, 410, 433
HpyAV CCTTC 4 cut(s) 91, 491, 587, 619
HpyCH4III ACNGT 2 cut(s) 67, 365
HpyCH4IV ACGT 2 cut(s) 10, 339
HpyCH4V TGCA 3 cut(s) 259, 441, 679
HpyF10VI GCNNNNNNNGC 1 cut(s) 432
HpyF3I CTNAG 1 cut(s) 710
HpySE526I ACGT 2 cut(s) 10, 339
Hsp92II CATG 4 cut(s) 202, 253, 426, 646
HspAI GCGC 1 cut(s) 27
KroI GCCGGC 1 cut(s) 116
KroNI GCCGGC 1 cut(s) 118
Kzo9I GATC 1 cut(s) 730
LmnI GCTCC 1 cut(s) 78
MaeI CTAG 2 cut(s) 212, 323
MaeII ACGT 2 cut(s) 10, 339
MaeIII GTNAC 5 cut(s) 481, 517, 529, 559, 611
MalI GATC 1 cut(s) 732
MboI GATC 1 cut(s) 730
MboII GAAGA 4 cut(s) 133, 384, 506, 632
MflI RGATCY 1 cut(s) 730
MhlI GDGCHC 1 cut(s) 437
MmeI TCCRAC 3 cut(s) 184, 374, 429
MnlI CCTC 9 cut(s) 40, 71, 86, 293, 296, 368, 538, 643, 707
MroNI GCCGGC 1 cut(s) 116
MseI TTAA 2 cut(s) 666, 748
MslI CAYNNNNRTG 2 cut(s) 254, 396
MspA1I CMGCKG 1 cut(s) 583
MspCI CTTAAG 1 cut(s) 665
MspI CCGG 4 cut(s) 117, 178, 306, 477
MwoI GCNNNNNNNGC 1 cut(s) 432
NaeI GCCGGC 1 cut(s) 118
NdeII GATC 1 cut(s) 730
NgoMIV GCCGGC 1 cut(s) 116
NlaIII CATG 4 cut(s) 202, 253, 426, 646
NmuCI GTSAC 1 cut(s) 611
NspI RCATGY 2 cut(s) 253, 426
NspV TTCGAA 1 cut(s) 234
PciI ACATGT 1 cut(s) 249
PcsI WCGNNNNNNNCGW 1 cut(s) 231
PdiI GCCGGC 1 cut(s) 118
PfeI GAWTC 2 cut(s) 344, 671
Ppu21I YACGTR 1 cut(s) 11
PscI ACATGT 1 cut(s) 249
PspPI GGNCC 1 cut(s) 175
PsuI RGATCY 1 cut(s) 730
PvuII CAGCTG 1 cut(s) 583
RsaI GTAC 1 cut(s) 744
RsaNI GTAC 1 cut(s) 743
RseI CAYNNNNRTG 2 cut(s) 254, 396
SalI GTCGAC 1 cut(s) 80
SaqAI TTAA 2 cut(s) 666, 748
Sau3AI GATC 1 cut(s) 730
Sau96I GGNCC 1 cut(s) 175
ScaI AGTACT 1 cut(s) 744
SduI GDGCHC 1 cut(s) 437
SfuI TTCGAA 1 cut(s) 234
SinI GGWCC 1 cut(s) 175
SmiMI CAYNNNNRTG 2 cut(s) 254, 396
SmlI CTYRAG 1 cut(s) 665
SmoI CTYRAG 1 cut(s) 665
SnaBI TACGTA 1 cut(s) 11
SspMI CTAG 2 cut(s) 212, 323
StyI CCWWGG 3 cut(s) 211, 322, 453
TaaI ACNGT 2 cut(s) 67, 365
TaiI ACGT 2 cut(s) 13, 342
TaqI TCGA 2 cut(s) 81, 234
TatI WGTACW 1 cut(s) 742
TfiI GAWTC 2 cut(s) 344, 671
Tru1I TTAA 2 cut(s) 666, 748
Tru9I TTAA 2 cut(s) 666, 748
TscAI CASTG 1 cut(s) 368
TseFI GTSAC 1 cut(s) 611
Tsp45I GTSAC 1 cut(s) 611
TspRI CASTG 1 cut(s) 368
Vha464I CTTAAG 1 cut(s) 665
VpaK11BI GGWCC 1 cut(s) 175
XceI RCATGY 2 cut(s) 253, 426
XcmI CCANNNNNNNNNTGG 1 cut(s) 196
XmaJI CCTAGG 2 cut(s) 211, 322
XmiI GTMKAC 1 cut(s) 81
XspI CTAG 2 cut(s) 212, 323
ZrmI AGTACT 1 cut(s) 744
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.