Rmu_sc0003466.1_g000011

Protein of unknown function (DUF674)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0003466.1
OG0000352
Physical Location & Seq
Reverse (-)
47802 .. 48146
345 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0003466.1_g000011.1.cds

Sequence Viewer

Length: 345 bp
atgaatcaaatgctaagaagttttacgtgcgtaagcagtcaagctgagcatacccggccggccccgcaactatatgtgtccgatgaccctaaagccatttgtccgaagtgtcatggtcccatgtccaacccggcaaggtatgttgctccaccagcgactacgggagaaagggcgacccatggaggcggctatgtgagaggcgtcgttacggacatgatgatggatgatttggaagtaaagcctatgtccaccatttcaagtatgactctgcttaacaacttcaacgttaaggatgttggtacccttgaagataaggtggttcctctagacatggataaggtttga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF674

Protein Analysis

114

Amino Acids

12.44

Weight (kDa)

5.83

Isoelectric Point (pI)

33.79

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000352)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g24890 FvH4_7g21280 FvH4_7g21300 FvH4_7g21300 FvH4_7g21310 FvH4_7g21330 FvH4_7g21340 FvH4_7g21600 FvH4_7g21610 FvH4_7g21630
malus_domestica MD07G1190400.v1.1 MD07G1190600.v1.1
prunus_persica Prupe.2G228600_v2.0.a1 Prupe.6G198200_v2.0.a1
pyrus_communis pycom07g18010
rosa_chinensis RchiOBHm_Chr1g0365711 RchiOBHm_Chr1g0365721 RchiOBHm_Chr1g0365731 RchiOBHm_Chr1g0365991 RchiOBHm_Chr5g0044511 RchiOBHm_Chr6g0247041 RchiOBHm_Chr6g0247081
rosa_laevigata RLG00000015223 RLG00000027405 RLG00000027406 RLG00000027407 RLG00000027408 RLG00000027409 RLG00000027411 RLG00000027413 RLG00000034277
rosa_multiflora Rmu_co8279495.1_g000001 Rmu_co8358963.1_g000001 Rmu_co8520123.1_g000003 Rmu_sc0002093.1_g000019 Rmu_sc0002093.1_g000024 Rmu_sc0002093.1_g000025 Rmu_sc0002093.1_g000029 Rmu_sc0002476.1_g000002 Rmu_sc0002476.1_g000021 Rmu_sc0003466.1_g000011 Rmu_sc0004288.1_g000006 Rmu_sc0004288.1_g000007 Rmu_sc0004311.1_g000022 Rmu_sc0004311.1_g000023 Rmu_sc0004311.1_g000026 Rmu_sc0004311.1_g000033 Rmu_sc0004577.1_g000008 Rmu_sc0004645.1_g000005 Rmu_sc0004645.1_g000006 Rmu_sc0006406.1_g000011 Rmu_sc0006406.1_g000012 Rmu_sc0009967.1_g000002 Rmu_sc0011598.1_g000003 Rmu_ssc0000151.1_g000015
rosa_roxburghii Rroxscaffold_1G00036500 Rroxscaffold_3G00276050 Rroxscaffold_4G00290950 Rroxscaffold_4G00290960 Rroxscaffold_4G00290970 Rroxscaffold_4G00290980 Rroxscaffold_4G00291000 Rroxscaffold_4G00291030 Rroxscaffold_4G00291060
rosa_rugosa Rorug01G0322900 Rorug01G0323000 Rorug01G0323100 Rorug01G0323200 Rorug01G0323300 Rorug01G0323400 Rorug01G0323500 Rorug01G0323600 Rorug05G0214700 Rorug05G0522100
rosa_samantha Rh1AG332000 Rh1AG332200 Rh1AG332300 Rh1AG334700 Rh1AG334800 Rh1AG335200 Rh1CG309900 Rh1CG310000 Rh1CG310100 Rh1DG325100 Rh1DG325300 Rh1DG325500 Rh5AG299000 Rh5BG306500 Rh5DG315800 Rh6AG037200 Rh6BG031900 Rh6BG032000 Rh6CG032300 Rh6CG032400 Rh6CG033200 Rh6DG030900
rosa_wichuraiana Rw0G001530 Rw1G019070 Rw1G029470 Rw1G029480 Rw1G029490 Rw1G029500 Rw1G029510 Rw1G029700 Rw5G027640 Rw5G027670 Rw6G003160 Rw6G003190

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 299
AccB1I GGYRCC 1 cut(s) 299
AciI CCGC 2 cut(s) 65, 186
AclI AACGTT 1 cut(s) 285
AcoI YGGCCR 1 cut(s) 56
AcyI GRCGYC 1 cut(s) 201
AfaI GTAC 1 cut(s) 301
AgsI TTSAA 3 cut(s) 258, 283, 308
AluBI AGCT 1 cut(s) 44
AluI AGCT 1 cut(s) 44
AoxI GGCC 2 cut(s) 56, 60
Asp718I GGTACC 1 cut(s) 299
AspS9I GGNCC 2 cut(s) 61, 116
AsuC2I CCSGG 2 cut(s) 55, 131
AvaII GGWCC 1 cut(s) 116
BanI GGYRCC 1 cut(s) 299
BccI CCATC 1 cut(s) 214
BcnI CCSGG 2 cut(s) 55, 131
BfaI CTAG 1 cut(s) 326
BisI GCNGC 1 cut(s) 187
BlpI GCTNAGC 1 cut(s) 45
BlsI GCNGC 1 cut(s) 188
Bme1390I CCNGG 2 cut(s) 55, 131
Bme18I GGWCC 1 cut(s) 116
BmgT120I GGNCC 2 cut(s) 61, 116
BmiI GGNNCC 4 cut(s) 63, 118, 301, 321
BmrFI CCNGG 2 cut(s) 55, 131
Bpu1102I GCTNAGC 1 cut(s) 45
BpuMI CCSGG 2 cut(s) 55, 131
BsaAI YACGTR 1 cut(s) 27
BsaHI GRCGYC 1 cut(s) 201
BsaJI CCNNGG 1 cut(s) 178
Bse118I RCCGGY 1 cut(s) 58
BseDI CCNNGG 1 cut(s) 178
BseGI GGATG 2 cut(s) 229, 298
BseMII CTCAG 1 cut(s) 36
BseX3I CGGCCG 1 cut(s) 56
Bsh1285I CGRYCG 1 cut(s) 59
BshFI GGCC 2 cut(s) 58, 62
BshNI GGYRCC 1 cut(s) 299
BsiEI CGRYCG 1 cut(s) 59
BsiSI CCGG 3 cut(s) 55, 59, 131
BslFI GGGAC 1 cut(s) 102
BsmFI GGGAC 1 cut(s) 102
BsnI GGCC 2 cut(s) 58, 62
Bsp1720I GCTNAGC 1 cut(s) 45
Bsp19I CCATGG 1 cut(s) 178
BspACI CCGC 2 cut(s) 65, 186
BspANI GGCC 2 cut(s) 58, 62
BspCNI CTCAG 1 cut(s) 37
BspLI GGNNCC 4 cut(s) 63, 118, 301, 321
BspT107I GGYRCC 1 cut(s) 299
BsrFI RCCGGY 1 cut(s) 58
BssAI RCCGGY 1 cut(s) 58
BssECI CCNNGG 1 cut(s) 178
BssNI GRCGYC 1 cut(s) 201
BssT1I CCWWGG 1 cut(s) 178
BstACI GRCGYC 1 cut(s) 201
BstBAI YACGTR 1 cut(s) 27
BstC8I GCNNGC 1 cut(s) 60
BstDEI CTNAG 2 cut(s) 14, 45
BstDSI CCRYGG 1 cut(s) 178
BstF5I GGATG 2 cut(s) 229, 298
BstMCI CGRYCG 1 cut(s) 59
BstMWI GCNNNNNNNGC 3 cut(s) 55, 64, 152
BstSCI CCNGG 2 cut(s) 53, 129
BstZI CGGCCG 1 cut(s) 56
BsuRI GGCC 2 cut(s) 58, 62
BtgI CCRYGG 1 cut(s) 178
BtsCI GGATG 2 cut(s) 229, 298
Cac8I GCNNGC 1 cut(s) 60
Cfr10I RCCGGY 1 cut(s) 58
Cfr13I GGNCC 2 cut(s) 61, 116
CseI GACGC 1 cut(s) 190
Csp6I GTAC 1 cut(s) 300
CviAII CATG 5 cut(s) 113, 121, 179, 214, 331
CviJI RGCY 6 cut(s) 44, 58, 62, 95, 189, 241
CviKI_1 RGCY 6 cut(s) 44, 58, 62, 95, 189, 241
CviQI GTAC 1 cut(s) 300
DdeI CTNAG 2 cut(s) 14, 45
EaeI YGGCCR 1 cut(s) 56
EagI CGGCCG 1 cut(s) 56
EclXI CGGCCG 1 cut(s) 56
Eco130I CCWWGG 1 cut(s) 178
Eco47I GGWCC 1 cut(s) 116
Eco52I CGGCCG 1 cut(s) 56
EcoT14I CCWWGG 1 cut(s) 178
ErhI CCWWGG 1 cut(s) 178
FaeI CATG 5 cut(s) 116, 124, 182, 217, 334
FaqI GGGAC 1 cut(s) 102
FatI CATG 5 cut(s) 112, 120, 178, 213, 330
FauI CCCGC 1 cut(s) 72
Fnu4HI GCNGC 1 cut(s) 187
FokI GGATG 2 cut(s) 236, 305
FseI GGCCGGCC 1 cut(s) 62
Fsp4HI GCNGC 1 cut(s) 187
FspBI CTAG 1 cut(s) 326
GluI GCNGC 1 cut(s) 187
HaeIII GGCC 2 cut(s) 58, 62
HapII CCGG 3 cut(s) 55, 59, 131
HgaI GACGC 1 cut(s) 190
Hin1I GRCGYC 1 cut(s) 201
Hin1II CATG 5 cut(s) 116, 124, 182, 217, 334
HinfI GANTC 2 cut(s) 4, 265
HpaII CCGG 3 cut(s) 55, 59, 131
Hpy166II GTNNAC 1 cut(s) 249
Hpy188I TCNGA 2 cut(s) 82, 105
Hpy188III TCNNGA 1 cut(s) 326
Hpy8I GTNNAC 1 cut(s) 249
Hpy99I CGWCG 1 cut(s) 206
HpyCH4IV ACGT 2 cut(s) 26, 285
HpyF10VI GCNNNNNNNGC 3 cut(s) 55, 64, 152
HpyF3I CTNAG 2 cut(s) 14, 45
HpySE526I ACGT 2 cut(s) 26, 285
Hsp92I GRCGYC 1 cut(s) 201
Hsp92II CATG 5 cut(s) 116, 124, 182, 217, 334
KpnI GGTACC 1 cut(s) 303
KroI GCCGGC 1 cut(s) 58
KroNI GCCGGC 1 cut(s) 60
LmnI GCTCC 1 cut(s) 151
LpnPI CCDG 4 cut(s) 68, 72, 144, 165
MaeI CTAG 1 cut(s) 326
MaeII ACGT 2 cut(s) 26, 285
MaeIII GTNAC 1 cut(s) 205
MboII GAAGA 1 cut(s) 320
MlyI GAGTC 1 cut(s) 259
MmeI TCCRAC 1 cut(s) 150
MnlI CCTC 3 cut(s) 176, 191, 333
MroNI GCCGGC 1 cut(s) 58
MseI TTAA 2 cut(s) 273, 288
MslI CAYNNNNRTG 1 cut(s) 218
MspI CCGG 3 cut(s) 55, 59, 131
MspR9I CCNGG 2 cut(s) 55, 131
MwoI GCNNNNNNNGC 3 cut(s) 55, 64, 152
NaeI GCCGGC 1 cut(s) 60
NciI CCSGG 2 cut(s) 55, 131
NcoI CCATGG 1 cut(s) 178
NgoMIV GCCGGC 1 cut(s) 58
NlaIII CATG 5 cut(s) 116, 124, 182, 217, 334
NlaIV GGNNCC 4 cut(s) 63, 118, 301, 321
PdiI GCCGGC 1 cut(s) 60
PfeI GAWTC 1 cut(s) 4
PkrI GCNGC 1 cut(s) 188
PleI GAGTC 1 cut(s) 259
PpsI GAGTC 1 cut(s) 259
Ppu21I YACGTR 1 cut(s) 27
Psp1406I AACGTT 1 cut(s) 285
PspN4I GGNNCC 4 cut(s) 63, 118, 301, 321
PspPI GGNCC 2 cut(s) 61, 116
RigI GGCCGGCC 1 cut(s) 62
RsaI GTAC 1 cut(s) 301
RsaNI GTAC 1 cut(s) 300
RseI CAYNNNNRTG 1 cut(s) 218
SaqAI TTAA 2 cut(s) 273, 288
SatI GCNGC 1 cut(s) 187
Sau96I GGNCC 2 cut(s) 61, 116
SchI GAGTC 1 cut(s) 259
ScrFI CCNGG 2 cut(s) 55, 131
SetI ASST 6 cut(s) 29, 46, 140, 288, 318, 342
SinI GGWCC 1 cut(s) 116
SmiMI CAYNNNNRTG 1 cut(s) 218
SsiI CCGC 2 cut(s) 65, 186
SspMI CTAG 1 cut(s) 326
StyD4I CCNGG 2 cut(s) 53, 129
StyI CCWWGG 1 cut(s) 178
TaiI ACGT 2 cut(s) 29, 288
TauI GCSGC 1 cut(s) 189
TfiI GAWTC 1 cut(s) 4
Tru1I TTAA 2 cut(s) 273, 288
Tru9I TTAA 2 cut(s) 273, 288
TspDTI ATGAA 1 cut(s) 17
TspGWI ACGGA 1 cut(s) 224
VpaK11BI GGWCC 1 cut(s) 116
XbaI TCTAGA 1 cut(s) 325
XspI CTAG 1 cut(s) 326
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.