RLG00000015223

Protein of unknown function (DUF674)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr3
OG0000352
Physical Location & Seq
Reverse (-)
63280777 .. 63281121
345 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000015223

Sequence Viewer

Length: 345 bp
ATGTCCCAAAAAACTCCACCCCCGAAGGTTAGTTTGAAGCTCCTAATCGACAAAGAGTATCATAAGGTTGTGTTTGCTGAAGCTGGTAAAGAGTTCGTGGATTTCCTCTTCACACTTCTGTCTTTGCCTCTTTTCAACGCGGCCAGAGTTTGTAAGGTTGGAAGTTTAAGCAATATCTATGGGAGCATTGACGCCCTCGGTGACAAGTACATGCTCCCCAATGTCAACAAGAACACTATGCTGAGATCCAAGGAACATGTTGCCAACAAACTTCAGCTTGTGTTGAGCAACGAACCGGACCTAAAACCACTTATGCAGTCGAATGTGAAGAAGTTTTATGTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF674

Protein Analysis

115

Amino Acids

12.86

Weight (kDa)

9.49

Isoelectric Point (pI)

39.48

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF674 PF05056 8 - 89 4e-15 Protein of unknown function (DUF674)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000352)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g24890 FvH4_7g21280 FvH4_7g21300 FvH4_7g21300 FvH4_7g21310 FvH4_7g21330 FvH4_7g21340 FvH4_7g21600 FvH4_7g21610 FvH4_7g21630
malus_domestica MD07G1190400.v1.1 MD07G1190600.v1.1
prunus_persica Prupe.2G228600_v2.0.a1 Prupe.6G198200_v2.0.a1
pyrus_communis pycom07g18010
rosa_chinensis RchiOBHm_Chr1g0365711 RchiOBHm_Chr1g0365721 RchiOBHm_Chr1g0365731 RchiOBHm_Chr1g0365991 RchiOBHm_Chr5g0044511 RchiOBHm_Chr6g0247041 RchiOBHm_Chr6g0247081
rosa_laevigata RLG00000015223 RLG00000027405 RLG00000027406 RLG00000027407 RLG00000027408 RLG00000027409 RLG00000027411 RLG00000027413 RLG00000034277
rosa_multiflora Rmu_co8279495.1_g000001 Rmu_co8358963.1_g000001 Rmu_co8520123.1_g000003 Rmu_sc0002093.1_g000019 Rmu_sc0002093.1_g000024 Rmu_sc0002093.1_g000025 Rmu_sc0002093.1_g000029 Rmu_sc0002476.1_g000002 Rmu_sc0002476.1_g000021 Rmu_sc0003466.1_g000011 Rmu_sc0004288.1_g000006 Rmu_sc0004288.1_g000007 Rmu_sc0004311.1_g000022 Rmu_sc0004311.1_g000023 Rmu_sc0004311.1_g000026 Rmu_sc0004311.1_g000033 Rmu_sc0004577.1_g000008 Rmu_sc0004645.1_g000005 Rmu_sc0004645.1_g000006 Rmu_sc0006406.1_g000011 Rmu_sc0006406.1_g000012 Rmu_sc0009967.1_g000002 Rmu_sc0011598.1_g000003 Rmu_ssc0000151.1_g000015
rosa_roxburghii Rroxscaffold_1G00036500 Rroxscaffold_3G00276050 Rroxscaffold_4G00290950 Rroxscaffold_4G00290960 Rroxscaffold_4G00290970 Rroxscaffold_4G00290980 Rroxscaffold_4G00291000 Rroxscaffold_4G00291030 Rroxscaffold_4G00291060
rosa_rugosa Rorug01G0322900 Rorug01G0323000 Rorug01G0323100 Rorug01G0323200 Rorug01G0323300 Rorug01G0323400 Rorug01G0323500 Rorug01G0323600 Rorug05G0214700 Rorug05G0522100
rosa_samantha Rh1AG332000 Rh1AG332200 Rh1AG332300 Rh1AG334700 Rh1AG334800 Rh1AG335200 Rh1CG309900 Rh1CG310000 Rh1CG310100 Rh1DG325100 Rh1DG325300 Rh1DG325500 Rh5AG299000 Rh5BG306500 Rh5DG315800 Rh6AG037200 Rh6BG031900 Rh6BG032000 Rh6CG032300 Rh6CG032400 Rh6CG033200 Rh6DG030900
rosa_wichuraiana Rw0G001530 Rw1G019070 Rw1G029470 Rw1G029480 Rw1G029490 Rw1G029500 Rw1G029510 Rw1G029700 Rw5G027640 Rw5G027670 Rw6G003160 Rw6G003190

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 140
AciI CCGC 1 cut(s) 140
AclWI GGATC 1 cut(s) 240
AcoI YGGCCR 1 cut(s) 141
AcuI CTGAAG 2 cut(s) 99, 257
AcyI GRCGYC 1 cut(s) 192
AfaI GTAC 1 cut(s) 209
AflIII ACRYGT 1 cut(s) 256
AgsI TTSAA 2 cut(s) 37, 136
AluBI AGCT 3 cut(s) 40, 83, 277
AluI AGCT 3 cut(s) 40, 83, 277
AlwI GGATC 1 cut(s) 240
AoxI GGCC 1 cut(s) 141
AspS9I GGNCC 1 cut(s) 298
AsuHPI GGTGA 1 cut(s) 212
AvaII GGWCC 1 cut(s) 298
BisI GCNGC 1 cut(s) 141
BlsI GCNGC 1 cut(s) 142
Bme18I GGWCC 1 cut(s) 298
BmgT120I GGNCC 1 cut(s) 298
BsaHI GRCGYC 1 cut(s) 192
BsaJI CCNNGG 2 cut(s) 196, 249
BsaWI WCCGGW 1 cut(s) 295
BseDI CCNNGG 2 cut(s) 196, 249
BseMII CTCAG 1 cut(s) 233
Bsh1236I CGCG 1 cut(s) 140
BshFI GGCC 1 cut(s) 143
BsiSI CCGG 1 cut(s) 296
BsnI GGCC 1 cut(s) 143
Bsp143I GATC 1 cut(s) 245
BspACI CCGC 1 cut(s) 140
BspANI GGCC 1 cut(s) 143
BspCNI CTCAG 1 cut(s) 234
BspFNI CGCG 1 cut(s) 140
BspPI GGATC 1 cut(s) 240
BssECI CCNNGG 2 cut(s) 196, 249
BssMI GATC 1 cut(s) 245
BssNI GRCGYC 1 cut(s) 192
BssT1I CCWWGG 1 cut(s) 249
Bst6I CTCTTC 1 cut(s) 113
BstACI GRCGYC 1 cut(s) 192
BstDEI CTNAG 1 cut(s) 242
BstFNI CGCG 1 cut(s) 140
BstKTI GATC 1 cut(s) 248
BstMBI GATC 1 cut(s) 245
BstNSI RCATGY 2 cut(s) 214, 260
BstUI CGCG 1 cut(s) 140
BstX2I RGATCY 1 cut(s) 245
BstYI RGATCY 1 cut(s) 245
BsuRI GGCC 1 cut(s) 143
Cfr13I GGNCC 1 cut(s) 298
CseI GACGC 1 cut(s) 200
Csp6I GTAC 1 cut(s) 208
CviAII CATG 2 cut(s) 211, 257
CviJI RGCY 4 cut(s) 40, 83, 143, 277
CviKI_1 RGCY 4 cut(s) 40, 83, 143, 277
CviQI GTAC 1 cut(s) 208
DdeI CTNAG 1 cut(s) 242
DpnI GATC 1 cut(s) 247
DpnII GATC 1 cut(s) 245
EaeI YGGCCR 1 cut(s) 141
Eam1104I CTCTTC 1 cut(s) 113
EarI CTCTTC 1 cut(s) 113
Eco130I CCWWGG 1 cut(s) 249
Eco47I GGWCC 1 cut(s) 298
Eco57I CTGAAG 2 cut(s) 99, 257
EcoT14I CCWWGG 1 cut(s) 249
ErhI CCWWGG 1 cut(s) 249
FaeI CATG 2 cut(s) 214, 260
FaiI YATR 7 cut(s) 63, 180, 212, 239, 258, 314, 339
FatI CATG 2 cut(s) 210, 256
Fnu4HI GCNGC 1 cut(s) 141
Fsp4HI GCNGC 1 cut(s) 141
GluI GCNGC 1 cut(s) 141
HaeIII GGCC 1 cut(s) 143
HapII CCGG 1 cut(s) 296
HgaI GACGC 1 cut(s) 200
Hin1I GRCGYC 1 cut(s) 192
Hin1II CATG 2 cut(s) 214, 260
HincII GTYRAC 1 cut(s) 226
HindII GTYRAC 1 cut(s) 226
HpaII CCGG 1 cut(s) 296
HphI GGTGA 1 cut(s) 212
Hpy166II GTNNAC 1 cut(s) 226
Hpy8I GTNNAC 1 cut(s) 226
HpyAV CCTTC 1 cut(s) 19
HpyCH4V TGCA 1 cut(s) 316
HpyF3I CTNAG 1 cut(s) 242
Hsp92I GRCGYC 1 cut(s) 192
Hsp92II CATG 2 cut(s) 214, 260
Kzo9I GATC 1 cut(s) 245
LmnI GCTCC 3 cut(s) 45, 183, 219
LpnPI CCDG 3 cut(s) 69, 157, 309
MaeIII GTNAC 1 cut(s) 200
MalI GATC 1 cut(s) 247
MboI GATC 1 cut(s) 245
MboII GAAGA 2 cut(s) 100, 340
MflI RGATCY 1 cut(s) 245
MmeI TCCRAC 1 cut(s) 139
MnlI CCTC 3 cut(s) 116, 138, 206
MseI TTAA 1 cut(s) 167
MspI CCGG 1 cut(s) 296
MvnI CGCG 1 cut(s) 140
NdeII GATC 1 cut(s) 245
NlaIII CATG 2 cut(s) 214, 260
NmuCI GTSAC 1 cut(s) 200
NspI RCATGY 2 cut(s) 214, 260
PciI ACATGT 1 cut(s) 256
PkrI GCNGC 1 cut(s) 142
PscI ACATGT 1 cut(s) 256
PspPI GGNCC 1 cut(s) 298
PsuI RGATCY 1 cut(s) 245
RsaI GTAC 1 cut(s) 209
RsaNI GTAC 1 cut(s) 208
SaqAI TTAA 1 cut(s) 167
SatI GCNGC 1 cut(s) 141
Sau3AI GATC 1 cut(s) 245
Sau96I GGNCC 1 cut(s) 298
SetI ASST 7 cut(s) 30, 42, 69, 85, 159, 279, 303
SinI GGWCC 1 cut(s) 298
SsiI CCGC 1 cut(s) 140
StyI CCWWGG 1 cut(s) 249
TaqI TCGA 2 cut(s) 48, 320
TatI WGTACW 1 cut(s) 207
TauI GCSGC 1 cut(s) 143
Tru1I TTAA 1 cut(s) 167
Tru9I TTAA 1 cut(s) 167
TseFI GTSAC 1 cut(s) 200
Tsp45I GTSAC 1 cut(s) 200
VpaK11BI GGWCC 1 cut(s) 298
XceI RCATGY 2 cut(s) 214, 260
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.