Rorug01G0323000

Protein of unknown function (DUF674)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000001
OG0000352
Physical Location & Seq
Forward (+)
44196816 .. 44197406
591 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug01G0323000.1

Sequence Viewer

Length: 546 bp
ATGCTAGCAAAACAAGGTTGGCGTTTTCTTACTCAGCAAAATTCCCTTGTGGCCCAAGTTTTCAAGGTAGTGTACTATCCTCATGGTTCTTTTCTTTCTGCTGACATGGGTGAGCAACCTTCGTACTCCTGGAGGAGTATCATGGAAGCTAGGCCAATTCTGCAGGCTGGCTTATCGTGGAGGATTGGCAATGGGGCTTCTGTTAGTATTTGGGATCAAGATTGGATACCATATAGAGTGGCTGATTTGATCAACATGGATACTTGGATGTGGGATGAAGCTGCAGTTCATGTTTGTTTTGAACCTCACGTGGCATCTCAAGTGTTGTCTATTCCACTTAGTCGTCGCTATGGCCAGGATAGAGTGGCCTGGAAGCTTAACAAGATAGGCTTCTTTTCTGTGAAAACTGCTTACACTATAGCTCGAGACTTCTCTATTGGAAACATCTTTGCTCATCCTCCACTGGAGATCCGTATGGCCCAATTTGGAGAGCATTGTGGAAGGCTAAGGTTCCCAACAAAGTGGCCATTTTTGGGTAGAGAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF674

Protein Analysis

181

Amino Acids

20.91

Weight (kDa)

9.23

Isoelectric Point (pI)

28.23

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000352)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g24890 FvH4_7g21280 FvH4_7g21300 FvH4_7g21300 FvH4_7g21310 FvH4_7g21330 FvH4_7g21340 FvH4_7g21600 FvH4_7g21610 FvH4_7g21630
malus_domestica MD07G1190400.v1.1 MD07G1190600.v1.1
prunus_persica Prupe.2G228600_v2.0.a1 Prupe.6G198200_v2.0.a1
pyrus_communis pycom07g18010
rosa_chinensis RchiOBHm_Chr1g0365711 RchiOBHm_Chr1g0365721 RchiOBHm_Chr1g0365731 RchiOBHm_Chr1g0365991 RchiOBHm_Chr5g0044511 RchiOBHm_Chr6g0247041 RchiOBHm_Chr6g0247081
rosa_laevigata RLG00000015223 RLG00000027405 RLG00000027406 RLG00000027407 RLG00000027408 RLG00000027409 RLG00000027411 RLG00000027413 RLG00000034277
rosa_multiflora Rmu_co8279495.1_g000001 Rmu_co8358963.1_g000001 Rmu_co8520123.1_g000003 Rmu_sc0002093.1_g000019 Rmu_sc0002093.1_g000024 Rmu_sc0002093.1_g000025 Rmu_sc0002093.1_g000029 Rmu_sc0002476.1_g000002 Rmu_sc0002476.1_g000021 Rmu_sc0003466.1_g000011 Rmu_sc0004288.1_g000006 Rmu_sc0004288.1_g000007 Rmu_sc0004311.1_g000022 Rmu_sc0004311.1_g000023 Rmu_sc0004311.1_g000026 Rmu_sc0004311.1_g000033 Rmu_sc0004577.1_g000008 Rmu_sc0004645.1_g000005 Rmu_sc0004645.1_g000006 Rmu_sc0006406.1_g000011 Rmu_sc0006406.1_g000012 Rmu_sc0009967.1_g000002 Rmu_sc0011598.1_g000003 Rmu_ssc0000151.1_g000015
rosa_roxburghii Rroxscaffold_1G00036500 Rroxscaffold_3G00276050 Rroxscaffold_4G00290950 Rroxscaffold_4G00290960 Rroxscaffold_4G00290970 Rroxscaffold_4G00290980 Rroxscaffold_4G00291000 Rroxscaffold_4G00291030 Rroxscaffold_4G00291060
rosa_rugosa Rorug01G0322900 Rorug01G0323000 Rorug01G0323100 Rorug01G0323200 Rorug01G0323300 Rorug01G0323400 Rorug01G0323500 Rorug01G0323600 Rorug05G0214700 Rorug05G0522100
rosa_samantha Rh1AG332000 Rh1AG332200 Rh1AG332300 Rh1AG334700 Rh1AG334800 Rh1AG335200 Rh1CG309900 Rh1CG310000 Rh1CG310100 Rh1DG325100 Rh1DG325300 Rh1DG325500 Rh5AG299000 Rh5BG306500 Rh5DG315800 Rh6AG037200 Rh6BG031900 Rh6BG032000 Rh6CG032300 Rh6CG032400 Rh6CG033200 Rh6DG030900
rosa_wichuraiana Rw0G001530 Rw1G019070 Rw1G029470 Rw1G029480 Rw1G029490 Rw1G029500 Rw1G029510 Rw1G029700 Rw5G027640 Rw5G027670 Rw6G003160 Rw6G003190

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 2 cut(s) 222, 463
AcoI YGGCCR 2 cut(s) 352, 524
AcsI RAATTY 1 cut(s) 40
AcvI CACGTG 1 cut(s) 310
AfaI GTAC 2 cut(s) 74, 125
AfiI CCNNNNNNNGG 1 cut(s) 533
AgsI TTSAA 2 cut(s) 64, 302
AjnI CCWGG 3 cut(s) 128, 354, 368
AluBI AGCT 4 cut(s) 149, 281, 376, 422
AluI AGCT 4 cut(s) 149, 281, 376, 422
Alw26I GTCTC 1 cut(s) 420
AlwI GGATC 2 cut(s) 222, 463
Ama87I CYCGRG 1 cut(s) 423
AoxI GGCC 6 cut(s) 51, 152, 352, 366, 477, 524
ApeKI GCWGC 1 cut(s) 281
ApoI RAATTY 1 cut(s) 40
AspS9I GGNCC 2 cut(s) 52, 478
AsuHPI GGTGA 1 cut(s) 122
AsuNHI GCTAGC 1 cut(s) 4
AvaI CYCGRG 1 cut(s) 423
BalI TGGCCA 2 cut(s) 354, 526
BbrPI CACGTG 1 cut(s) 310
BbvI GCAGC 1 cut(s) 268
BciT130I CCWGG 3 cut(s) 130, 356, 370
BciVI GTATCC 2 cut(s) 219, 253
BclI TGATCA 1 cut(s) 249
BcoDI GTCTC 1 cut(s) 420
BfaI CTAG 2 cut(s) 5, 150
BfmI CTRYAG 3 cut(s) 161, 282, 417
BfuI GTATCC 2 cut(s) 219, 253
BisI GCNGC 1 cut(s) 282
BlsI GCNGC 1 cut(s) 283
Bme1390I CCNGG 3 cut(s) 130, 356, 370
BmeT110I CYCGRG 1 cut(s) 423
BmgT120I GGNCC 2 cut(s) 52, 478
BmiI GGNNCC 1 cut(s) 512
BmrFI CCNGG 3 cut(s) 130, 356, 370
BmsI GCATC 1 cut(s) 323
BmtI GCTAGC 1 cut(s) 8
BpmI CTGGAG 2 cut(s) 151, 485
Bpu10I CCTNAGC 1 cut(s) 506
BpuEI CTTGAG 1 cut(s) 303
BsaAI YACGTR 1 cut(s) 310
Bsc4I CCNNNNNNNGG 1 cut(s) 533
Bse1I ACTGG 1 cut(s) 468
Bse3DI GCAATG 1 cut(s) 196
BseBI CCWGG 3 cut(s) 130, 356, 370
BseGI GGATG 3 cut(s) 273, 280, 454
BseLI CCNNNNNNNGG 1 cut(s) 533
BseMI GCAATG 1 cut(s) 196
BseMII CTCAG 1 cut(s) 47
BseNI ACTGG 1 cut(s) 468
BseRI GAGGAG 1 cut(s) 148
BseXI GCAGC 1 cut(s) 268
BshFI GGCC 6 cut(s) 53, 154, 354, 368, 479, 526
BsiHKCI CYCGRG 1 cut(s) 423
BslI CCNNNNNNNGG 1 cut(s) 533
BsmAI GTCTC 1 cut(s) 420
BsnI GGCC 6 cut(s) 53, 154, 354, 368, 479, 526
BsoBI CYCGRG 1 cut(s) 423
Bsp143I GATC 3 cut(s) 214, 249, 468
BspANI GGCC 6 cut(s) 53, 154, 354, 368, 479, 526
BspCNI CTCAG 1 cut(s) 46
BspLI GGNNCC 1 cut(s) 512
BspMAI CTGCAG 2 cut(s) 165, 286
BspOI GCTAGC 1 cut(s) 8
BspPI GGATC 2 cut(s) 222, 463
BsrDI GCAATG 1 cut(s) 196
BsrI ACTGG 1 cut(s) 468
BssMI GATC 3 cut(s) 214, 249, 468
Bst2UI CCWGG 3 cut(s) 130, 356, 370
BstBAI YACGTR 1 cut(s) 310
BstC8I GCNNGC 3 cut(s) 6, 165, 169
BstDEI CTNAG 3 cut(s) 33, 338, 506
BstF5I GGATG 3 cut(s) 273, 280, 454
BstKTI GATC 3 cut(s) 217, 252, 471
BstMAI GTCTC 1 cut(s) 420
BstMBI GATC 3 cut(s) 214, 249, 468
BstMWI GCNNNNNNNGC 1 cut(s) 160
BstNI CCWGG 3 cut(s) 130, 356, 370
BstSCI CCNGG 3 cut(s) 128, 354, 368
BstSFI CTRYAG 3 cut(s) 161, 282, 417
BstV1I GCAGC 1 cut(s) 268
BstX2I RGATCY 1 cut(s) 468
BstXI CCANNNNNNTGG 1 cut(s) 522
BstYI RGATCY 1 cut(s) 468
BsuI GTATCC 2 cut(s) 219, 253
BsuRI GGCC 6 cut(s) 53, 154, 354, 368, 479, 526
BtsCI GGATG 3 cut(s) 273, 280, 454
BtsIMutI CAGTG 1 cut(s) 461
Cac8I GCNNGC 3 cut(s) 6, 165, 169
Cfr13I GGNCC 2 cut(s) 52, 478
Csp6I GTAC 2 cut(s) 73, 124
CviAII CATG 5 cut(s) 83, 106, 142, 256, 290
CviQI GTAC 2 cut(s) 73, 124
DdeI CTNAG 3 cut(s) 33, 338, 506
DpnI GATC 3 cut(s) 216, 251, 470
DpnII GATC 3 cut(s) 214, 249, 468
EaeI YGGCCR 2 cut(s) 352, 524
Eco72I CACGTG 1 cut(s) 310
Eco88I CYCGRG 1 cut(s) 423
EcoRII CCWGG 3 cut(s) 128, 354, 368
FaeI CATG 5 cut(s) 86, 109, 145, 259, 293
FalI AAGNNNNNCTT 2 cut(s) 374, 406
FatI CATG 5 cut(s) 82, 105, 141, 255, 289
FbaI TGATCA 1 cut(s) 249
Fnu4HI GCNGC 1 cut(s) 282
FokI GGATG 3 cut(s) 280, 287, 441
Fsp4HI GCNGC 1 cut(s) 282
FspBI CTAG 2 cut(s) 5, 150
GluI GCNGC 1 cut(s) 282
GsuI CTGGAG 2 cut(s) 151, 485
HaeIII GGCC 6 cut(s) 53, 154, 354, 368, 479, 526
Hin1II CATG 5 cut(s) 86, 109, 145, 259, 293
HindIII AAGCTT 1 cut(s) 374
HphI GGTGA 1 cut(s) 122
Hpy166II GTNNAC 1 cut(s) 73
Hpy188III TCNNGA 2 cut(s) 218, 425
Hpy8I GTNNAC 1 cut(s) 73
Hpy99I CGWCG 1 cut(s) 348
HpyAV CCTTC 2 cut(s) 129, 495
HpyCH4IV ACGT 1 cut(s) 309
HpyCH4V TGCA 2 cut(s) 163, 284
HpyF10VI GCNNNNNNNGC 1 cut(s) 160
HpyF3I CTNAG 3 cut(s) 33, 338, 506
HpySE526I ACGT 1 cut(s) 309
Hsp92II CATG 5 cut(s) 86, 109, 145, 259, 293
Ksp22I TGATCA 1 cut(s) 249
Kzo9I GATC 3 cut(s) 214, 249, 468
LpnPI CCDG 9 cut(s) 115, 142, 149, 153, 341, 355, 368, 382, 449
Lsp1109I GCAGC 1 cut(s) 268
LweI GCATC 1 cut(s) 323
MaeI CTAG 2 cut(s) 5, 150
MaeII ACGT 1 cut(s) 309
MalI GATC 3 cut(s) 216, 251, 470
MboI GATC 3 cut(s) 214, 249, 468
MflI RGATCY 1 cut(s) 468
MlsI TGGCCA 2 cut(s) 354, 526
MluCI AATT 3 cut(s) 40, 156, 482
MluNI TGGCCA 2 cut(s) 354, 526
MnlI CCTC 5 cut(s) 90, 126, 174, 315, 468
Mox20I TGGCCA 2 cut(s) 354, 526
MscI TGGCCA 2 cut(s) 354, 526
MseI TTAA 1 cut(s) 378
Msp20I TGGCCA 2 cut(s) 354, 526
MspR9I CCNGG 3 cut(s) 130, 356, 370
MvaI CCWGG 3 cut(s) 130, 356, 370
MwoI GCNNNNNNNGC 1 cut(s) 160
NdeII GATC 3 cut(s) 214, 249, 468
NheI GCTAGC 1 cut(s) 4
NlaIII CATG 5 cut(s) 86, 109, 145, 259, 293
NlaIV GGNNCC 1 cut(s) 512
PaeR7I CTCGAG 1 cut(s) 423
PfoI TCCNGGA 1 cut(s) 128
PkrI GCNGC 1 cut(s) 283
PmaCI CACGTG 1 cut(s) 310
PmlI CACGTG 1 cut(s) 310
Ppu21I YACGTR 1 cut(s) 310
Psp6I CCWGG 3 cut(s) 128, 354, 368
PspCI CACGTG 1 cut(s) 310
PspGI CCWGG 3 cut(s) 128, 354, 368
PspN4I GGNNCC 1 cut(s) 512
PspPI GGNCC 2 cut(s) 52, 478
PstI CTGCAG 2 cut(s) 165, 286
PsuI RGATCY 1 cut(s) 468
RsaI GTAC 2 cut(s) 74, 125
RsaNI GTAC 2 cut(s) 73, 124
SaqAI TTAA 1 cut(s) 378
SatI GCNGC 1 cut(s) 282
Sau3AI GATC 3 cut(s) 214, 249, 468
Sau96I GGNCC 2 cut(s) 52, 478
ScrFI CCNGG 3 cut(s) 130, 356, 370
SfaNI GCATC 1 cut(s) 323
SfcI CTRYAG 3 cut(s) 161, 282, 417
Sfr274I CTCGAG 1 cut(s) 423
SlaI CTCGAG 1 cut(s) 423
SmlI CTYRAG 2 cut(s) 318, 423
SmoI CTYRAG 2 cut(s) 318, 423
Sse9I AATT 3 cut(s) 40, 156, 482
SspMI CTAG 2 cut(s) 5, 150
StyD4I CCNGG 3 cut(s) 128, 354, 368
TaiI ACGT 1 cut(s) 312
TaqI TCGA 1 cut(s) 424
TasI AATT 3 cut(s) 40, 156, 482
TatI WGTACW 1 cut(s) 72
Tru1I TTAA 1 cut(s) 378
Tru9I TTAA 1 cut(s) 378
TscAI CASTG 1 cut(s) 468
TseI GCWGC 1 cut(s) 281
TspDTI ATGAA 2 cut(s) 278, 291
TspGWI ACGGA 1 cut(s) 461
TspRI CASTG 1 cut(s) 468
XapI RAATTY 1 cut(s) 40
XhoI CTCGAG 1 cut(s) 423
XspI CTAG 2 cut(s) 5, 150
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.