Prupe.6G198200_v2.0.a1

Protein of unknown function (DUF674)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp06
OG0000352
Physical Location & Seq
Reverse (-)
20502846 .. 20505128
2283 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.6G198200.1

Sequence Viewer

Length: 714 bp
ATGGCAGCCTCTAACTCTGGCACCGTTAGTTTGAAGCTCCTCATTGACACAACGCGCAATAAAGTTCTGTTTGCTGAAGCGGGTAAGGACTTTGTGGACTTTCTCTTCACTCTCCTGTCTCTTCCGGCTGGCACTATCATCAGGCTGCTCTCTAAGGATGCCATGGTTGGTAGCTTAGGCAAACTTTATGAGAGCGTTGAAACTCTCAACGACGAATATTTGCAGCCCAATCTTAACAAAGACACCCTCCTGAAACCAAAAGAACCCGTTGCTGCTGGACCTAACCTCCTTGGTTTGTTAACCGATGTCAAATCTGATGCTCCAAAGACGATCTACCGTTGTTCGAATGGTAGTTGCATCTACCGCATCTCTTATGTGGCTGACGACCCTAAAGCCATATGTCCAGGGTGCAAGCACTCCATGACCACCGCCGTTACTTATGTTGCTTCACCGACTAGTGAGGTACAGGCTACTTATTCCGGTGCTGGCAAGGTAGGGTATGTGAAGGGCCTTGTTACATACATGATAATGGATGATCTCGAAGTGAAGCCCTTGTCTACTATTTCTTGTATCACTTTGCTCAGCCGGTTCAGTGTTAAGGATGTTGGTGTCCTTGAAGAGAAGGTGGTTGATCTAGGAATGGATGAGGGTGTGAAACTACTAAAGGCATCATTGCAGACAAAGTCAGTTCTCACCCAAGTGTTCCTTAGGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF674

Protein Analysis

238

Amino Acids

25.56

Weight (kDa)

7.54

Isoelectric Point (pI)

16.73

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000352)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g24890 FvH4_7g21280 FvH4_7g21300 FvH4_7g21300 FvH4_7g21310 FvH4_7g21330 FvH4_7g21340 FvH4_7g21600 FvH4_7g21610 FvH4_7g21630
malus_domestica MD07G1190400.v1.1 MD07G1190600.v1.1
prunus_persica Prupe.2G228600_v2.0.a1 Prupe.6G198200_v2.0.a1
pyrus_communis pycom07g18010
rosa_chinensis RchiOBHm_Chr1g0365711 RchiOBHm_Chr1g0365721 RchiOBHm_Chr1g0365731 RchiOBHm_Chr1g0365991 RchiOBHm_Chr5g0044511 RchiOBHm_Chr6g0247041 RchiOBHm_Chr6g0247081
rosa_laevigata RLG00000015223 RLG00000027405 RLG00000027406 RLG00000027407 RLG00000027408 RLG00000027409 RLG00000027411 RLG00000027413 RLG00000034277
rosa_multiflora Rmu_co8279495.1_g000001 Rmu_co8358963.1_g000001 Rmu_co8520123.1_g000003 Rmu_sc0002093.1_g000019 Rmu_sc0002093.1_g000024 Rmu_sc0002093.1_g000025 Rmu_sc0002093.1_g000029 Rmu_sc0002476.1_g000002 Rmu_sc0002476.1_g000021 Rmu_sc0003466.1_g000011 Rmu_sc0004288.1_g000006 Rmu_sc0004288.1_g000007 Rmu_sc0004311.1_g000022 Rmu_sc0004311.1_g000023 Rmu_sc0004311.1_g000026 Rmu_sc0004311.1_g000033 Rmu_sc0004577.1_g000008 Rmu_sc0004645.1_g000005 Rmu_sc0004645.1_g000006 Rmu_sc0006406.1_g000011 Rmu_sc0006406.1_g000012 Rmu_sc0009967.1_g000002 Rmu_sc0011598.1_g000003 Rmu_ssc0000151.1_g000015
rosa_roxburghii Rroxscaffold_1G00036500 Rroxscaffold_3G00276050 Rroxscaffold_4G00290950 Rroxscaffold_4G00290960 Rroxscaffold_4G00290970 Rroxscaffold_4G00290980 Rroxscaffold_4G00291000 Rroxscaffold_4G00291030 Rroxscaffold_4G00291060
rosa_rugosa Rorug01G0322900 Rorug01G0323000 Rorug01G0323100 Rorug01G0323200 Rorug01G0323300 Rorug01G0323400 Rorug01G0323500 Rorug01G0323600 Rorug05G0214700 Rorug05G0522100
rosa_samantha Rh1AG332000 Rh1AG332200 Rh1AG332300 Rh1AG334700 Rh1AG334800 Rh1AG335200 Rh1CG309900 Rh1CG310000 Rh1CG310100 Rh1DG325100 Rh1DG325300 Rh1DG325500 Rh5AG299000 Rh5BG306500 Rh5DG315800 Rh6AG037200 Rh6BG031900 Rh6BG032000 Rh6CG032300 Rh6CG032400 Rh6CG033200 Rh6DG030900
rosa_wichuraiana Rw0G001530 Rw1G019070 Rw1G029470 Rw1G029480 Rw1G029490 Rw1G029500 Rw1G029510 Rw1G029700 Rw5G027640 Rw5G027670 Rw6G003160 Rw6G003190

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 20
AccI GTMKAC 1 cut(s) 557
AccII CGCG 1 cut(s) 55
AciI CCGC 3 cut(s) 80, 364, 429
AcuI CTGAAG 1 cut(s) 96
AfaI GTAC 1 cut(s) 465
AgsI TTSAA 3 cut(s) 34, 200, 617
AhlI ACTAGT 1 cut(s) 455
AjnI CCWGG 1 cut(s) 403
AleI CACNNNNGTG 1 cut(s) 698
AluBI AGCT 2 cut(s) 37, 174
AluI AGCT 2 cut(s) 37, 174
Alw26I GTCTC 1 cut(s) 123
AoxI GGCC 1 cut(s) 508
ApeKI GCWGC 4 cut(s) 5, 145, 223, 272
AspLEI GCGC 1 cut(s) 57
AspS9I GGNCC 2 cut(s) 278, 508
AsuHPI GGTGA 2 cut(s) 441, 685
AsuII TTCGAA 1 cut(s) 344
AvaII GGWCC 1 cut(s) 278
AxyI CCTNAGG 1 cut(s) 707
BanI GGYRCC 1 cut(s) 20
BbvI GCAGC 4 cut(s) 17, 132, 235, 259
BceAI ACGGC 1 cut(s) 416
BciT130I CCWGG 1 cut(s) 405
BcoDI GTCTC 1 cut(s) 123
BcuI ACTAGT 1 cut(s) 455
BfaI CTAG 2 cut(s) 456, 635
BisI GCNGC 4 cut(s) 6, 146, 224, 273
BlpI GCTNAGC 1 cut(s) 581
BlsI GCNGC 4 cut(s) 7, 147, 225, 274
Bme1390I CCNGG 1 cut(s) 405
Bme18I GGWCC 1 cut(s) 278
BmgT120I GGNCC 2 cut(s) 278, 508
BmiI GGNNCC 1 cut(s) 22
BmrFI CCNGG 1 cut(s) 405
BmsI GCATC 5 cut(s) 148, 307, 366, 375, 677
Bpu10I CCTNAGC 1 cut(s) 175
Bpu1102I GCTNAGC 1 cut(s) 581
Bpu14I TTCGAA 1 cut(s) 344
BsaJI CCNNGG 3 cut(s) 162, 289, 404
BsaWI WCCGGW 1 cut(s) 479
BsaXI ACNNNNNCTCC 2 cut(s) 270, 300
Bse118I RCCGGY 1 cut(s) 585
Bse21I CCTNAGG 1 cut(s) 707
Bse3DI GCAATG 1 cut(s) 671
BseBI CCWGG 1 cut(s) 405
BseDI CCNNGG 3 cut(s) 162, 289, 404
BseGI GGATG 4 cut(s) 163, 538, 607, 649
BseMI GCAATG 1 cut(s) 671
BseMII CTCAG 1 cut(s) 595
BseRI GAGGAG 1 cut(s) 29
BseXI GCAGC 4 cut(s) 17, 132, 235, 259
Bsh1236I CGCG 1 cut(s) 55
BshFI GGCC 1 cut(s) 510
BshNI GGYRCC 1 cut(s) 20
BsiSI CCGG 3 cut(s) 125, 480, 586
BsmAI GTCTC 1 cut(s) 123
BsnI GGCC 1 cut(s) 510
Bsp119I TTCGAA 1 cut(s) 344
Bsp143I GATC 3 cut(s) 330, 535, 631
Bsp1720I GCTNAGC 1 cut(s) 581
Bsp19I CCATGG 1 cut(s) 162
BspACI CCGC 3 cut(s) 80, 364, 429
BspANI GGCC 1 cut(s) 510
BspCNI CTCAG 1 cut(s) 594
BspFNI CGCG 1 cut(s) 55
BspLI GGNNCC 1 cut(s) 22
BspT104I TTCGAA 1 cut(s) 344
BspT107I GGYRCC 1 cut(s) 20
BsrDI GCAATG 1 cut(s) 671
BsrFI RCCGGY 1 cut(s) 585
BssAI RCCGGY 1 cut(s) 585
BssECI CCNNGG 3 cut(s) 162, 289, 404
BssMI GATC 3 cut(s) 330, 535, 631
BssT1I CCWWGG 2 cut(s) 162, 289
Bst2UI CCWGG 1 cut(s) 405
Bst4CI ACNGT 2 cut(s) 25, 338
Bst6I CTCTTC 3 cut(s) 110, 126, 612
BstBI TTCGAA 1 cut(s) 344
BstC8I GCNNGC 3 cut(s) 130, 413, 487
BstDEI CTNAG 4 cut(s) 153, 175, 581, 707
BstDSI CCRYGG 1 cut(s) 162
BstF5I GGATG 4 cut(s) 163, 538, 607, 649
BstFNI CGCG 1 cut(s) 55
BstHHI GCGC 1 cut(s) 57
BstKTI GATC 3 cut(s) 333, 538, 634
BstMAI GTCTC 1 cut(s) 123
BstMBI GATC 3 cut(s) 330, 535, 631
BstMWI GCNNNNNNNGC 1 cut(s) 363
BstNI CCWGG 1 cut(s) 405
BstSCI CCNGG 1 cut(s) 403
BstUI CGCG 1 cut(s) 55
BstV1I GCAGC 4 cut(s) 17, 132, 235, 259
Bsu36I CCTNAGG 1 cut(s) 707
BsuRI GGCC 1 cut(s) 510
BtgI CCRYGG 1 cut(s) 162
BtsCI GGATG 4 cut(s) 163, 538, 607, 649
BtsIMutI CAGTG 1 cut(s) 598
Cac8I GCNNGC 3 cut(s) 130, 413, 487
CfoI GCGC 1 cut(s) 57
Cfr10I RCCGGY 1 cut(s) 585
Cfr13I GGNCC 2 cut(s) 278, 508
Csp6I GTAC 1 cut(s) 464
CviAII CATG 3 cut(s) 163, 421, 523
CviQI GTAC 1 cut(s) 464
DdeI CTNAG 4 cut(s) 153, 175, 581, 707
DpnI GATC 3 cut(s) 332, 537, 633
DpnII GATC 3 cut(s) 330, 535, 631
Eam1104I CTCTTC 3 cut(s) 110, 126, 612
EarI CTCTTC 3 cut(s) 110, 126, 612
Eco130I CCWWGG 2 cut(s) 162, 289
Eco47I GGWCC 1 cut(s) 278
Eco57I CTGAAG 1 cut(s) 96
Eco81I CCTNAGG 1 cut(s) 707
EcoO109I RGGNCCY 1 cut(s) 508
EcoRII CCWGG 1 cut(s) 403
EcoT14I CCWWGG 2 cut(s) 162, 289
ErhI CCWWGG 2 cut(s) 162, 289
FaeI CATG 3 cut(s) 166, 424, 526
FalI AAGNNNNNCTT 1 cut(s) 690
FatI CATG 3 cut(s) 162, 420, 522
FauI CCCGC 1 cut(s) 73
FauNDI CATATG 1 cut(s) 398
FblI GTMKAC 1 cut(s) 557
Fnu4HI GCNGC 4 cut(s) 6, 146, 224, 273
FokI GGATG 4 cut(s) 170, 545, 614, 656
Fsp4HI GCNGC 4 cut(s) 6, 146, 224, 273
FspBI CTAG 2 cut(s) 456, 635
GlaI GCGC 1 cut(s) 56
GluI GCNGC 4 cut(s) 6, 146, 224, 273
HaeIII GGCC 1 cut(s) 510
HapII CCGG 3 cut(s) 125, 480, 586
HhaI GCGC 1 cut(s) 57
Hin1II CATG 3 cut(s) 166, 424, 526
Hin6I GCGC 1 cut(s) 55
HinP1I GCGC 1 cut(s) 55
HincII GTYRAC 1 cut(s) 300
HindII GTYRAC 1 cut(s) 300
HpaI GTTAAC 1 cut(s) 300
HpaII CCGG 3 cut(s) 125, 480, 586
HphI GGTGA 2 cut(s) 441, 685
Hpy166II GTNNAC 3 cut(s) 97, 300, 558
Hpy188I TCNGA 1 cut(s) 316
Hpy188III TCNNGA 2 cut(s) 250, 539
Hpy8I GTNNAC 3 cut(s) 97, 300, 558
Hpy99I CGWCG 1 cut(s) 215
HpyAV CCTTC 2 cut(s) 499, 616
HpyCH4III ACNGT 2 cut(s) 25, 338
HpyCH4V TGCA 4 cut(s) 223, 357, 411, 676
HpyF10VI GCNNNNNNNGC 1 cut(s) 363
HpyF3I CTNAG 4 cut(s) 153, 175, 581, 707
Hsp92II CATG 3 cut(s) 166, 424, 526
HspAI GCGC 1 cut(s) 55
KspAI GTTAAC 1 cut(s) 300
Kzo9I GATC 3 cut(s) 330, 535, 631
LmnI GCTCC 2 cut(s) 42, 325
Lsp1109I GCAGC 4 cut(s) 17, 132, 235, 259
LweI GCATC 5 cut(s) 148, 307, 366, 375, 677
MaeI CTAG 2 cut(s) 456, 635
MaeIII GTNAC 2 cut(s) 433, 514
MalI GATC 3 cut(s) 332, 537, 633
MboI GATC 3 cut(s) 330, 535, 631
MboII GAAGA 3 cut(s) 97, 113, 629
MnlI CCTC 6 cut(s) 19, 50, 257, 296, 454, 640
MseI TTAA 3 cut(s) 234, 299, 597
MslI CAYNNNNRTG 2 cut(s) 527, 698
MspI CCGG 3 cut(s) 125, 480, 586
MspR9I CCNGG 1 cut(s) 405
MvaI CCWGG 1 cut(s) 405
MvnI CGCG 1 cut(s) 55
MwoI GCNNNNNNNGC 1 cut(s) 363
NcoI CCATGG 1 cut(s) 162
NdeI CATATG 1 cut(s) 398
NdeII GATC 3 cut(s) 330, 535, 631
NlaIII CATG 3 cut(s) 166, 424, 526
NlaIV GGNNCC 1 cut(s) 22
NspV TTCGAA 1 cut(s) 344
OliI CACNNNNGTG 1 cut(s) 698
PflFI GACNNNGTC 1 cut(s) 682
PkrI GCNGC 4 cut(s) 7, 147, 225, 274
Psp6I CCWGG 1 cut(s) 403
PspGI CCWGG 1 cut(s) 403
PspN4I GGNNCC 1 cut(s) 22
PspPI GGNCC 2 cut(s) 278, 508
PsyI GACNNNGTC 1 cut(s) 682
RsaI GTAC 1 cut(s) 465
RsaNI GTAC 1 cut(s) 464
RseI CAYNNNNRTG 2 cut(s) 527, 698
SaqAI TTAA 3 cut(s) 234, 299, 597
SatI GCNGC 4 cut(s) 6, 146, 224, 273
Sau3AI GATC 3 cut(s) 330, 535, 631
Sau96I GGNCC 2 cut(s) 278, 508
ScrFI CCNGG 1 cut(s) 405
SetI ASST 8 cut(s) 39, 176, 283, 288, 465, 495, 627, 713
SfaNI GCATC 5 cut(s) 148, 307, 366, 375, 677
SfuI TTCGAA 1 cut(s) 344
SinI GGWCC 1 cut(s) 278
SmiMI CAYNNNNRTG 2 cut(s) 527, 698
SpeI ACTAGT 1 cut(s) 455
SsiI CCGC 3 cut(s) 80, 364, 429
SspI AATATT 1 cut(s) 218
SspMI CTAG 2 cut(s) 456, 635
StyD4I CCNGG 1 cut(s) 403
StyI CCWWGG 2 cut(s) 162, 289
TaaI ACNGT 2 cut(s) 25, 338
TaqI TCGA 2 cut(s) 344, 540
Tru1I TTAA 3 cut(s) 234, 299, 597
Tru9I TTAA 3 cut(s) 234, 299, 597
TscAI CASTG 1 cut(s) 598
TseI GCWGC 4 cut(s) 5, 145, 223, 272
TspRI CASTG 1 cut(s) 598
Tth111I GACNNNGTC 1 cut(s) 682
VpaK11BI GGWCC 1 cut(s) 278
XmiI GTMKAC 1 cut(s) 557
XspI CTAG 2 cut(s) 456, 635
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.