FvH4_7g21600

Protein of unknown function (DUF674)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb7
OG0000352
Physical Location & Seq
Forward (+)
17241047 .. 17241882
836 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_7g21600.t1

Sequence Viewer

Length: 318 bp
ATGAGTTATGTTCCTCCACCGAGTAGTAGTGGTAGTGCAGAATCTTCCGCCGGGAAAGGGGTAGGGTTTGTGAAAGCGGTTGTTACATACATGATAATGGATGACTTGGAAGTCAAGCCTATGTCTACCATTTCAACAATAGCCCAGTTCAATGTTCGAGATTTTGGTGCCCTGGAACAGAAGGTTGTTGATCTGGGCATGGATGAGGGCGTGAAGTTGCTCAAGGAACCATTGCAATCGAAGTCAGTCCTAACTAATGTGTTTCTTGGGGGAGTGTCTGGAAGAGTGAAGCATGAACATCTCAACTCTGCAAGTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF674

Protein Analysis

106

Amino Acids

11.13

Weight (kDa)

6.06

Isoelectric Point (pI)

35.25

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF674 PF05056 12 - 93 6.7e-13 Protein of unknown function (DUF674)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000352)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g24890 FvH4_7g21280 FvH4_7g21300 FvH4_7g21300 FvH4_7g21310 FvH4_7g21330 FvH4_7g21340 FvH4_7g21600 FvH4_7g21610 FvH4_7g21630
malus_domestica MD07G1190400.v1.1 MD07G1190600.v1.1
prunus_persica Prupe.2G228600_v2.0.a1 Prupe.6G198200_v2.0.a1
pyrus_communis pycom07g18010
rosa_chinensis RchiOBHm_Chr1g0365711 RchiOBHm_Chr1g0365721 RchiOBHm_Chr1g0365731 RchiOBHm_Chr1g0365991 RchiOBHm_Chr5g0044511 RchiOBHm_Chr6g0247041 RchiOBHm_Chr6g0247081
rosa_laevigata RLG00000015223 RLG00000027405 RLG00000027406 RLG00000027407 RLG00000027408 RLG00000027409 RLG00000027411 RLG00000027413 RLG00000034277
rosa_multiflora Rmu_co8279495.1_g000001 Rmu_co8358963.1_g000001 Rmu_co8520123.1_g000003 Rmu_sc0002093.1_g000019 Rmu_sc0002093.1_g000024 Rmu_sc0002093.1_g000025 Rmu_sc0002093.1_g000029 Rmu_sc0002476.1_g000002 Rmu_sc0002476.1_g000021 Rmu_sc0003466.1_g000011 Rmu_sc0004288.1_g000006 Rmu_sc0004288.1_g000007 Rmu_sc0004311.1_g000022 Rmu_sc0004311.1_g000023 Rmu_sc0004311.1_g000026 Rmu_sc0004311.1_g000033 Rmu_sc0004577.1_g000008 Rmu_sc0004645.1_g000005 Rmu_sc0004645.1_g000006 Rmu_sc0006406.1_g000011 Rmu_sc0006406.1_g000012 Rmu_sc0009967.1_g000002 Rmu_sc0011598.1_g000003 Rmu_ssc0000151.1_g000015
rosa_roxburghii Rroxscaffold_1G00036500 Rroxscaffold_3G00276050 Rroxscaffold_4G00290950 Rroxscaffold_4G00290960 Rroxscaffold_4G00290970 Rroxscaffold_4G00290980 Rroxscaffold_4G00291000 Rroxscaffold_4G00291030 Rroxscaffold_4G00291060
rosa_rugosa Rorug01G0322900 Rorug01G0323000 Rorug01G0323100 Rorug01G0323200 Rorug01G0323300 Rorug01G0323400 Rorug01G0323500 Rorug01G0323600 Rorug05G0214700 Rorug05G0522100
rosa_samantha Rh1AG332000 Rh1AG332200 Rh1AG332300 Rh1AG334700 Rh1AG334800 Rh1AG335200 Rh1CG309900 Rh1CG310000 Rh1CG310100 Rh1DG325100 Rh1DG325300 Rh1DG325500 Rh5AG299000 Rh5BG306500 Rh5DG315800 Rh6AG037200 Rh6BG031900 Rh6BG032000 Rh6CG032300 Rh6CG032400 Rh6CG033200 Rh6DG030900
rosa_wichuraiana Rw0G001530 Rw1G019070 Rw1G029470 Rw1G029480 Rw1G029490 Rw1G029500 Rw1G029510 Rw1G029700 Rw5G027640 Rw5G027670 Rw6G003160 Rw6G003190

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 110
AccB1I GGYRCC 1 cut(s) 167
AccI GTMKAC 1 cut(s) 125
AciI CCGC 2 cut(s) 48, 77
AfiI CCNNNNNNNGG 1 cut(s) 57
AgsI TTSAA 2 cut(s) 135, 151
AjnI CCWGG 1 cut(s) 171
AsuC2I CCSGG 1 cut(s) 52
BaeGI GKGCMC 1 cut(s) 172
BanI GGYRCC 1 cut(s) 167
BciT130I CCWGG 1 cut(s) 173
BcnI CCSGG 1 cut(s) 52
Bme1390I CCNGG 2 cut(s) 52, 173
BmiI GGNNCC 2 cut(s) 169, 228
BmrFI CCNGG 2 cut(s) 52, 173
BmrI ACTGGG 1 cut(s) 139
BmuI ACTGGG 1 cut(s) 139
BpuEI CTTGAG 1 cut(s) 206
BpuMI CCSGG 1 cut(s) 52
BsaJI CCNNGG 1 cut(s) 171
Bsc4I CCNNNNNNNGG 1 cut(s) 57
Bse1I ACTGG 1 cut(s) 145
Bse3DI GCAATG 1 cut(s) 230
BseBI CCWGG 1 cut(s) 173
BseDI CCNNGG 1 cut(s) 171
BseGI GGATG 2 cut(s) 106, 208
BseLI CCNNNNNNNGG 1 cut(s) 57
BseMI GCAATG 1 cut(s) 230
BseNI ACTGG 1 cut(s) 145
BseSI GKGCMC 1 cut(s) 172
BsgI GTGCAG 1 cut(s) 57
BshNI GGYRCC 1 cut(s) 167
BsiSI CCGG 1 cut(s) 51
BslI CCNNNNNNNGG 1 cut(s) 57
Bsp1286I GDGCHC 1 cut(s) 172
Bsp143I GATC 1 cut(s) 190
BspACI CCGC 2 cut(s) 48, 77
BspLI GGNNCC 2 cut(s) 169, 228
BspT107I GGYRCC 1 cut(s) 167
BsrDI GCAATG 1 cut(s) 230
BsrI ACTGG 1 cut(s) 145
BssECI CCNNGG 1 cut(s) 171
BssMI GATC 1 cut(s) 190
Bst2UI CCWGG 1 cut(s) 173
Bst6I CTCTTC 1 cut(s) 277
BstF5I GGATG 2 cut(s) 106, 208
BstKTI GATC 1 cut(s) 193
BstMBI GATC 1 cut(s) 190
BstNI CCWGG 1 cut(s) 173
BstSCI CCNGG 2 cut(s) 50, 171
BstSLI GKGCMC 1 cut(s) 172
BtsCI GGATG 2 cut(s) 106, 208
CviAII CATG 3 cut(s) 91, 199, 293
CviJI RGCY 2 cut(s) 118, 143
CviKI_1 RGCY 2 cut(s) 118, 143
DpnI GATC 1 cut(s) 192
DpnII GATC 1 cut(s) 190
DrdI GACNNNNNNGTC 1 cut(s) 110
DseDI GACNNNNNNGTC 1 cut(s) 110
Eam1104I CTCTTC 1 cut(s) 277
EarI CTCTTC 1 cut(s) 277
EciI GGCGGA 1 cut(s) 37
EcoRII CCWGG 1 cut(s) 171
FaeI CATG 3 cut(s) 94, 202, 296
FaiI YATR 6 cut(s) 9, 88, 92, 122, 200, 294
FatI CATG 3 cut(s) 90, 198, 292
FblI GTMKAC 1 cut(s) 125
FokI GGATG 2 cut(s) 113, 215
HapII CCGG 1 cut(s) 51
Hin1II CATG 3 cut(s) 94, 202, 296
HinfI GANTC 1 cut(s) 41
HpaII CCGG 1 cut(s) 51
Hpy166II GTNNAC 1 cut(s) 126
Hpy188III TCNNGA 2 cut(s) 158, 279
Hpy8I GTNNAC 1 cut(s) 126
HpyAV CCTTC 1 cut(s) 175
HpyCH4V TGCA 3 cut(s) 38, 235, 311
Hsp92II CATG 3 cut(s) 94, 202, 296
Kzo9I GATC 1 cut(s) 190
LpnPI CCDG 6 cut(s) 64, 158, 158, 179, 185, 264
MaeIII GTNAC 1 cut(s) 82
MalI GATC 1 cut(s) 192
MboI GATC 1 cut(s) 190
MboII GAAGA 2 cut(s) 36, 294
MhlI GDGCHC 1 cut(s) 172
MnlI CCTC 2 cut(s) 24, 199
MslI CAYNNNNRTG 1 cut(s) 95
MspI CCGG 1 cut(s) 51
MspR9I CCNGG 2 cut(s) 52, 173
MvaI CCWGG 1 cut(s) 173
NciI CCSGG 1 cut(s) 52
NdeII GATC 1 cut(s) 190
NlaIII CATG 3 cut(s) 94, 202, 296
NlaIV GGNNCC 2 cut(s) 169, 228
PfeI GAWTC 1 cut(s) 41
Psp6I CCWGG 1 cut(s) 171
PspGI CCWGG 1 cut(s) 171
PspN4I GGNNCC 2 cut(s) 169, 228
RseI CAYNNNNRTG 1 cut(s) 95
Sau3AI GATC 1 cut(s) 190
ScrFI CCNGG 2 cut(s) 52, 173
SduI GDGCHC 1 cut(s) 172
SetI ASST 1 cut(s) 186
SmiMI CAYNNNNRTG 1 cut(s) 95
SmlI CTYRAG 1 cut(s) 221
SmoI CTYRAG 1 cut(s) 221
SsiI CCGC 2 cut(s) 48, 77
StyD4I CCNGG 2 cut(s) 50, 171
TaqI TCGA 2 cut(s) 157, 239
TfiI GAWTC 1 cut(s) 41
TspDTI ATGAA 1 cut(s) 309
XmiI GTMKAC 1 cut(s) 125
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.