Prupe.2G228600_v2.0.a1

Protein of unknown function (DUF674)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp02
OG0000352
Physical Location & Seq
Forward (+)
25417851 .. 25418999
1149 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.2G228600.1

Sequence Viewer

Length: 627 bp
ATGGCAACCAACACTGTAAGCTTGAAGCTCTTGATTGACACAAAGGGCCATAAGGTTCTGTTTGCTGAAGCAGGCAAGGACTTTGTGGATTTCCTTTTCACGCCTCTGGCTTTGCCTGTTGGAACTGTGATTAGGCTCCTCTCTAAGGATAACATGGTGGGCAGCTTAGGCAAGCTTTATGATAGTCTTGAACTTCTTAATGACACATATATGTTACCTAATCTCAACAAGGACACATTGGCTAAAAAGGTGTACATGTGTAGGACCTACCACCTCTTTATAGCTGACGATCCTAGAGCCATTTGCCCAGCGTGCAAATATACTCTCTCTACCGAGGTGCCTTATGTTGCAGCACCGGCTATTGCGGAAGGATCGTCTGGTGGTGGTGGTGGTGGAGGGTATGTGAAAGATGTTGTTACATACATGATAATGGATAATTTGGAAGTGAAGCCTATGTCTACCATATCGTGTATAGCTATGTTGAACAGGTTCAATGTTAAGGAGGTTGGTACCCTTGAAGAGAGGATGGTTCTTCTAGGCATGGATGAGGGTCTGAAATTGCTCAAGGCATCATTGGAGTCTAACGCAGTTCTCACCAATGTCTTCTTTGGGAAGAAAGAGGTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF674

Protein Analysis

209

Amino Acids

22.66

Weight (kDa)

6.14

Isoelectric Point (pI)

27.02

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000352)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g24890 FvH4_7g21280 FvH4_7g21300 FvH4_7g21300 FvH4_7g21310 FvH4_7g21330 FvH4_7g21340 FvH4_7g21600 FvH4_7g21610 FvH4_7g21630
malus_domestica MD07G1190400.v1.1 MD07G1190600.v1.1
prunus_persica Prupe.2G228600_v2.0.a1 Prupe.6G198200_v2.0.a1
pyrus_communis pycom07g18010
rosa_chinensis RchiOBHm_Chr1g0365711 RchiOBHm_Chr1g0365721 RchiOBHm_Chr1g0365731 RchiOBHm_Chr1g0365991 RchiOBHm_Chr5g0044511 RchiOBHm_Chr6g0247041 RchiOBHm_Chr6g0247081
rosa_laevigata RLG00000015223 RLG00000027405 RLG00000027406 RLG00000027407 RLG00000027408 RLG00000027409 RLG00000027411 RLG00000027413 RLG00000034277
rosa_multiflora Rmu_co8279495.1_g000001 Rmu_co8358963.1_g000001 Rmu_co8520123.1_g000003 Rmu_sc0002093.1_g000019 Rmu_sc0002093.1_g000024 Rmu_sc0002093.1_g000025 Rmu_sc0002093.1_g000029 Rmu_sc0002476.1_g000002 Rmu_sc0002476.1_g000021 Rmu_sc0003466.1_g000011 Rmu_sc0004288.1_g000006 Rmu_sc0004288.1_g000007 Rmu_sc0004311.1_g000022 Rmu_sc0004311.1_g000023 Rmu_sc0004311.1_g000026 Rmu_sc0004311.1_g000033 Rmu_sc0004577.1_g000008 Rmu_sc0004645.1_g000005 Rmu_sc0004645.1_g000006 Rmu_sc0006406.1_g000011 Rmu_sc0006406.1_g000012 Rmu_sc0009967.1_g000002 Rmu_sc0011598.1_g000003 Rmu_ssc0000151.1_g000015
rosa_roxburghii Rroxscaffold_1G00036500 Rroxscaffold_3G00276050 Rroxscaffold_4G00290950 Rroxscaffold_4G00290960 Rroxscaffold_4G00290970 Rroxscaffold_4G00290980 Rroxscaffold_4G00291000 Rroxscaffold_4G00291030 Rroxscaffold_4G00291060
rosa_rugosa Rorug01G0322900 Rorug01G0323000 Rorug01G0323100 Rorug01G0323200 Rorug01G0323300 Rorug01G0323400 Rorug01G0323500 Rorug01G0323600 Rorug05G0214700 Rorug05G0522100
rosa_samantha Rh1AG332000 Rh1AG332200 Rh1AG332300 Rh1AG334700 Rh1AG334800 Rh1AG335200 Rh1CG309900 Rh1CG310000 Rh1CG310100 Rh1DG325100 Rh1DG325300 Rh1DG325500 Rh5AG299000 Rh5BG306500 Rh5DG315800 Rh6AG037200 Rh6BG031900 Rh6BG032000 Rh6CG032300 Rh6CG032400 Rh6CG033200 Rh6DG030900
rosa_wichuraiana Rw0G001530 Rw1G019070 Rw1G029470 Rw1G029480 Rw1G029490 Rw1G029500 Rw1G029510 Rw1G029700 Rw5G027640 Rw5G027670 Rw6G003160 Rw6G003190

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 509
AccB1I GGYRCC 2 cut(s) 337, 509
AccI GTMKAC 1 cut(s) 458
AciI CCGC 1 cut(s) 365
AclWI GGATC 2 cut(s) 284, 379
AcuI CTGAAG 1 cut(s) 87
AfaI GTAC 2 cut(s) 254, 511
AfiI CCNNNNNNNGG 1 cut(s) 145
AflIII ACRYGT 1 cut(s) 255
AgsI TTSAA 5 cut(s) 25, 191, 484, 493, 518
AluBI AGCT 6 cut(s) 21, 28, 165, 175, 284, 476
AluI AGCT 6 cut(s) 21, 28, 165, 175, 284, 476
AlwI GGATC 2 cut(s) 284, 379
AoxI GGCC 1 cut(s) 46
ApeKI GCWGC 2 cut(s) 162, 350
Asp700I GAANNNNTTC 1 cut(s) 488
Asp718I GGTACC 1 cut(s) 509
AspS9I GGNCC 2 cut(s) 46, 264
AsuHPI GGTGA 1 cut(s) 586
AvaII GGWCC 1 cut(s) 264
BanI GGYRCC 2 cut(s) 337, 509
BbsI GAAGAC 1 cut(s) 595
BbvI GCAGC 2 cut(s) 174, 362
BccI CCATC 1 cut(s) 520
BfaI CTAG 2 cut(s) 294, 536
BisI GCNGC 2 cut(s) 163, 351
BlsI GCNGC 2 cut(s) 164, 352
Bme18I GGWCC 1 cut(s) 264
BmgT120I GGNCC 2 cut(s) 46, 264
BmiI GGNNCC 3 cut(s) 137, 339, 511
BmsI GCATC 1 cut(s) 578
BpiI GAAGAC 1 cut(s) 595
Bpu10I CCTNAGC 1 cut(s) 166
BpuEI CTTGAG 1 cut(s) 548
BsaJI CCNNGG 1 cut(s) 333
BsaXI ACNNNNNCTCC 2 cut(s) 387, 417
Bsc4I CCNNNNNNNGG 1 cut(s) 145
Bse118I RCCGGY 1 cut(s) 355
BseDI CCNNGG 1 cut(s) 333
BseGI GGATG 2 cut(s) 531, 550
BseLI CCNNNNNNNGG 1 cut(s) 145
BseRI GAGGAG 1 cut(s) 128
BseXI GCAGC 2 cut(s) 174, 362
BseYI CCCAGC 1 cut(s) 307
BshFI GGCC 1 cut(s) 48
BshNI GGYRCC 2 cut(s) 337, 509
BsiSI CCGG 1 cut(s) 356
BslI CCNNNNNNNGG 1 cut(s) 145
BsnI GGCC 1 cut(s) 48
Bsp1407I TGTACA 1 cut(s) 252
Bsp143I GATC 2 cut(s) 289, 371
BspACI CCGC 1 cut(s) 365
BspANI GGCC 1 cut(s) 48
BspLI GGNNCC 3 cut(s) 137, 339, 511
BspPI GGATC 2 cut(s) 284, 379
BspT107I GGYRCC 2 cut(s) 337, 509
BsrFI RCCGGY 1 cut(s) 355
BsrGI TGTACA 1 cut(s) 252
BssAI RCCGGY 1 cut(s) 355
BssECI CCNNGG 1 cut(s) 333
BssMI GATC 2 cut(s) 289, 371
Bst4CI ACNGT 2 cut(s) 16, 127
Bst6I CTCTTC 1 cut(s) 513
BstAUI TGTACA 1 cut(s) 252
BstC8I GCNNGC 3 cut(s) 73, 173, 313
BstDEI CTNAG 2 cut(s) 144, 166
BstENI CCTNNNNNAGG 1 cut(s) 143
BstF5I GGATG 2 cut(s) 531, 550
BstKTI GATC 2 cut(s) 292, 374
BstMBI GATC 2 cut(s) 289, 371
BstMWI GCNNNNNNNGC 3 cut(s) 168, 312, 356
BstNSI RCATGY 1 cut(s) 259
BstV1I GCAGC 2 cut(s) 174, 362
BstV2I GAAGAC 1 cut(s) 595
BsuRI GGCC 1 cut(s) 48
BtsCI GGATG 2 cut(s) 531, 550
BtsIMutI CAGTG 1 cut(s) 12
Cac8I GCNNGC 3 cut(s) 73, 173, 313
Cfr10I RCCGGY 1 cut(s) 355
Cfr13I GGNCC 2 cut(s) 46, 264
Csp6I GTAC 2 cut(s) 253, 510
CviAII CATG 4 cut(s) 154, 256, 424, 541
CviQI GTAC 2 cut(s) 253, 510
DdeI CTNAG 2 cut(s) 144, 166
DpnI GATC 2 cut(s) 291, 373
DpnII GATC 2 cut(s) 289, 371
Eam1104I CTCTTC 1 cut(s) 513
EarI CTCTTC 1 cut(s) 513
Eco47I GGWCC 1 cut(s) 264
Eco57I CTGAAG 1 cut(s) 87
EcoNI CCTNNNNNAGG 1 cut(s) 143
EcoO109I RGGNCCY 1 cut(s) 264
FaeI CATG 4 cut(s) 157, 259, 427, 544
FatI CATG 4 cut(s) 153, 255, 423, 540
FblI GTMKAC 1 cut(s) 458
Fnu4HI GCNGC 2 cut(s) 163, 351
FokI GGATG 2 cut(s) 538, 557
Fsp4HI GCNGC 2 cut(s) 163, 351
FspBI CTAG 2 cut(s) 294, 536
GluI GCNGC 2 cut(s) 163, 351
GsaI CCCAGC 1 cut(s) 311
HaeIII GGCC 1 cut(s) 48
HapII CCGG 1 cut(s) 356
Hin1II CATG 4 cut(s) 157, 259, 427, 544
HindIII AAGCTT 2 cut(s) 19, 173
HinfI GANTC 1 cut(s) 578
HpaII CCGG 1 cut(s) 356
HphI GGTGA 1 cut(s) 586
Hpy166II GTNNAC 2 cut(s) 253, 459
Hpy188I TCNGA 1 cut(s) 555
Hpy188III TCNNGA 2 cut(s) 31, 188
Hpy8I GTNNAC 2 cut(s) 253, 459
HpyAV CCTTC 1 cut(s) 362
HpyCH4III ACNGT 2 cut(s) 16, 127
HpyCH4V TGCA 2 cut(s) 315, 350
HpyF10VI GCNNNNNNNGC 3 cut(s) 168, 312, 356
HpyF3I CTNAG 2 cut(s) 144, 166
Hsp92II CATG 4 cut(s) 157, 259, 427, 544
KpnI GGTACC 1 cut(s) 513
Kzo9I GATC 2 cut(s) 289, 371
LmnI GCTCC 1 cut(s) 141
LpnPI CCDG 7 cut(s) 57, 92, 129, 321, 363, 369, 472
Lsp1109I GCAGC 2 cut(s) 174, 362
LweI GCATC 1 cut(s) 578
MaeI CTAG 2 cut(s) 294, 536
MaeIII GTNAC 2 cut(s) 213, 415
MalI GATC 2 cut(s) 291, 373
MboI GATC 2 cut(s) 289, 371
MboII GAAGA 4 cut(s) 524, 530, 595, 625
MluCI AATT 2 cut(s) 436, 557
MlyI GAGTC 1 cut(s) 587
MmeI TCCRAC 1 cut(s) 100
MnlI CCTC 9 cut(s) 114, 149, 284, 328, 389, 496, 516, 541, 613
MroXI GAANNNNTTC 1 cut(s) 488
MseI TTAA 2 cut(s) 198, 498
MslI CAYNNNNRTG 2 cut(s) 209, 428
MspI CCGG 1 cut(s) 356
MwoI GCNNNNNNNGC 3 cut(s) 168, 312, 356
NdeII GATC 2 cut(s) 289, 371
NlaIII CATG 4 cut(s) 157, 259, 427, 544
NlaIV GGNNCC 3 cut(s) 137, 339, 511
NspI RCATGY 1 cut(s) 259
PciI ACATGT 1 cut(s) 255
PdmI GAANNNNTTC 1 cut(s) 488
PkrI GCNGC 2 cut(s) 164, 352
PleI GAGTC 1 cut(s) 586
PpsI GAGTC 1 cut(s) 586
PpuMI RGGWCCY 1 cut(s) 264
PscI ACATGT 1 cut(s) 255
Psp5II RGGWCCY 1 cut(s) 264
PspFI CCCAGC 1 cut(s) 307
PspN4I GGNNCC 3 cut(s) 137, 339, 511
PspPI GGNCC 2 cut(s) 46, 264
PspPPI RGGWCCY 1 cut(s) 264
RsaI GTAC 2 cut(s) 254, 511
RsaNI GTAC 2 cut(s) 253, 510
RseI CAYNNNNRTG 2 cut(s) 209, 428
SaqAI TTAA 2 cut(s) 198, 498
SatI GCNGC 2 cut(s) 163, 351
Sau3AI GATC 2 cut(s) 289, 371
Sau96I GGNCC 2 cut(s) 46, 264
SchI GAGTC 1 cut(s) 587
SfaNI GCATC 1 cut(s) 578
SinI GGWCC 1 cut(s) 264
SmiMI CAYNNNNRTG 2 cut(s) 209, 428
SmlI CTYRAG 1 cut(s) 563
SmoI CTYRAG 1 cut(s) 563
Sse9I AATT 2 cut(s) 436, 557
SsiI CCGC 1 cut(s) 365
SspMI CTAG 2 cut(s) 294, 536
TaaI ACNGT 2 cut(s) 16, 127
TasI AATT 2 cut(s) 436, 557
TatI WGTACW 1 cut(s) 252
Tru1I TTAA 2 cut(s) 198, 498
Tru9I TTAA 2 cut(s) 198, 498
TscAI CASTG 1 cut(s) 19
TseI GCWGC 2 cut(s) 162, 350
TspRI CASTG 1 cut(s) 19
VpaK11BI GGWCC 1 cut(s) 264
XagI CCTNNNNNAGG 1 cut(s) 143
XceI RCATGY 1 cut(s) 259
XmiI GTMKAC 1 cut(s) 458
XmnI GAANNNNTTC 1 cut(s) 488
XspI CTAG 2 cut(s) 294, 536
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.