Rmu_sc0002093.1_g000029

Protein of unknown function (DUF674)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0002093.1
OG0000352
Physical Location & Seq
Forward (+)
116380 .. 116787
408 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0002093.1_g000029.1.cds

Sequence Viewer

Length: 408 bp
atgctcccagattgtaacagagataccttgctcaaacccacagcggtaataggcagtggggatgcctctcttttgttaactaatgatgagttagtggcgaatagaaaggcttacatgtgtgtgaacagccaccggtatgtggctgatgaccctagagccatatgtccaaagtgcaaaaattatatctccaccgaagtgccttatgttgctccgcaggctactactgctggatcttccggggatggtcgtggatatgtgaaagatattgtgacatacatgattatggataatttggaggtgaatcccctgtctaccatagcttgtctaactatgcttaacaagttcaatgttaaggaggttggttcccttgaagagaaggtggttcatctaggcatggatgaggtatga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF674

Protein Analysis

135

Amino Acids

14.73

Weight (kDa)

5.07

Isoelectric Point (pI)

24.58

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000352)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g24890 FvH4_7g21280 FvH4_7g21300 FvH4_7g21300 FvH4_7g21310 FvH4_7g21330 FvH4_7g21340 FvH4_7g21600 FvH4_7g21610 FvH4_7g21630
malus_domestica MD07G1190400.v1.1 MD07G1190600.v1.1
prunus_persica Prupe.2G228600_v2.0.a1 Prupe.6G198200_v2.0.a1
pyrus_communis pycom07g18010
rosa_chinensis RchiOBHm_Chr1g0365711 RchiOBHm_Chr1g0365721 RchiOBHm_Chr1g0365731 RchiOBHm_Chr1g0365991 RchiOBHm_Chr5g0044511 RchiOBHm_Chr6g0247041 RchiOBHm_Chr6g0247081
rosa_laevigata RLG00000015223 RLG00000027405 RLG00000027406 RLG00000027407 RLG00000027408 RLG00000027409 RLG00000027411 RLG00000027413 RLG00000034277
rosa_multiflora Rmu_co8279495.1_g000001 Rmu_co8358963.1_g000001 Rmu_co8520123.1_g000003 Rmu_sc0002093.1_g000019 Rmu_sc0002093.1_g000024 Rmu_sc0002093.1_g000025 Rmu_sc0002093.1_g000029 Rmu_sc0002476.1_g000002 Rmu_sc0002476.1_g000021 Rmu_sc0003466.1_g000011 Rmu_sc0004288.1_g000006 Rmu_sc0004288.1_g000007 Rmu_sc0004311.1_g000022 Rmu_sc0004311.1_g000023 Rmu_sc0004311.1_g000026 Rmu_sc0004311.1_g000033 Rmu_sc0004577.1_g000008 Rmu_sc0004645.1_g000005 Rmu_sc0004645.1_g000006 Rmu_sc0006406.1_g000011 Rmu_sc0006406.1_g000012 Rmu_sc0009967.1_g000002 Rmu_sc0011598.1_g000003 Rmu_ssc0000151.1_g000015
rosa_roxburghii Rroxscaffold_1G00036500 Rroxscaffold_3G00276050 Rroxscaffold_4G00290950 Rroxscaffold_4G00290960 Rroxscaffold_4G00290970 Rroxscaffold_4G00290980 Rroxscaffold_4G00291000 Rroxscaffold_4G00291030 Rroxscaffold_4G00291060
rosa_rugosa Rorug01G0322900 Rorug01G0323000 Rorug01G0323100 Rorug01G0323200 Rorug01G0323300 Rorug01G0323400 Rorug01G0323500 Rorug01G0323600 Rorug05G0214700 Rorug05G0522100
rosa_samantha Rh1AG332000 Rh1AG332200 Rh1AG332300 Rh1AG334700 Rh1AG334800 Rh1AG335200 Rh1CG309900 Rh1CG310000 Rh1CG310100 Rh1DG325100 Rh1DG325300 Rh1DG325500 Rh5AG299000 Rh5BG306500 Rh5DG315800 Rh6AG037200 Rh6BG031900 Rh6BG032000 Rh6CG032300 Rh6CG032400 Rh6CG033200 Rh6DG030900
rosa_wichuraiana Rw0G001530 Rw1G019070 Rw1G029470 Rw1G029480 Rw1G029490 Rw1G029500 Rw1G029510 Rw1G029700 Rw5G027640 Rw5G027670 Rw6G003160 Rw6G003190

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 311
AciI CCGC 2 cut(s) 44, 212
AclWI GGATC 1 cut(s) 238
AfiI CCNNNNNNNGG 1 cut(s) 139
AflIII ACRYGT 1 cut(s) 114
AgeI ACCGGT 1 cut(s) 132
AgsI TTSAA 2 cut(s) 346, 371
AleI CACNNNNGTG 1 cut(s) 194
AluBI AGCT 1 cut(s) 320
AluI AGCT 1 cut(s) 320
AlwI GGATC 1 cut(s) 238
AsiGI ACCGGT 1 cut(s) 132
AsuC2I CCSGG 1 cut(s) 238
AsuHPI GGTGA 1 cut(s) 310
BccI CCATC 1 cut(s) 236
BcnI CCSGG 1 cut(s) 238
BfaI CTAG 2 cut(s) 153, 389
Bme1390I CCNGG 1 cut(s) 238
BmiI GGNNCC 1 cut(s) 364
BmrFI CCNGG 1 cut(s) 238
BmsI GCATC 1 cut(s) 52
BpuMI CCSGG 1 cut(s) 238
BsaJI CCNNGG 1 cut(s) 237
BsaWI WCCGGW 1 cut(s) 132
Bsc4I CCNNNNNNNGG 1 cut(s) 139
Bse118I RCCGGY 1 cut(s) 132
BseDI CCNNGG 1 cut(s) 237
BseGI GGATG 3 cut(s) 67, 247, 403
BseLI CCNNNNNNNGG 1 cut(s) 139
BshTI ACCGGT 1 cut(s) 132
BsiSI CCGG 2 cut(s) 133, 237
BslI CCNNNNNNNGG 1 cut(s) 139
Bsp143I GATC 1 cut(s) 230
BspACI CCGC 2 cut(s) 44, 212
BspLI GGNNCC 1 cut(s) 364
BspPI GGATC 1 cut(s) 238
BsrFI RCCGGY 1 cut(s) 132
BssAI RCCGGY 1 cut(s) 132
BssECI CCNNGG 1 cut(s) 237
BssMI GATC 1 cut(s) 230
Bst6I CTCTTC 1 cut(s) 366
BstC8I GCNNGC 1 cut(s) 216
BstF5I GGATG 3 cut(s) 67, 247, 403
BstKTI GATC 1 cut(s) 233
BstMBI GATC 1 cut(s) 230
BstMWI GCNNNNNNNGC 2 cut(s) 215, 224
BstNSI RCATGY 1 cut(s) 118
BstSCI CCNGG 1 cut(s) 236
BstX2I RGATCY 1 cut(s) 230
BstYI RGATCY 1 cut(s) 230
BtsCI GGATG 3 cut(s) 67, 247, 403
BtsI GCAGTG 1 cut(s) 61
BtsIMutI CAGTG 1 cut(s) 61
Cac8I GCNNGC 1 cut(s) 216
Cfr10I RCCGGY 1 cut(s) 132
CspAI ACCGGT 1 cut(s) 132
CviAII CATG 3 cut(s) 115, 277, 394
CviJI RGCY 6 cut(s) 110, 129, 143, 158, 218, 320
CviKI_1 RGCY 6 cut(s) 110, 129, 143, 158, 218, 320
DpnI GATC 1 cut(s) 232
DpnII GATC 1 cut(s) 230
Eam1104I CTCTTC 1 cut(s) 366
EarI CTCTTC 1 cut(s) 366
FaeI CATG 3 cut(s) 118, 280, 397
FatI CATG 3 cut(s) 114, 276, 393
FauNDI CATATG 1 cut(s) 161
FblI GTMKAC 1 cut(s) 311
FokI GGATG 2 cut(s) 74, 254
FspBI CTAG 2 cut(s) 153, 389
HapII CCGG 2 cut(s) 133, 237
Hin1II CATG 3 cut(s) 118, 280, 397
HincII GTYRAC 1 cut(s) 78
HindII GTYRAC 1 cut(s) 78
HinfI GANTC 1 cut(s) 301
HpaI GTTAAC 1 cut(s) 78
HpaII CCGG 2 cut(s) 133, 237
HphI GGTGA 1 cut(s) 310
Hpy166II GTNNAC 3 cut(s) 78, 124, 312
Hpy8I GTNNAC 3 cut(s) 78, 124, 312
HpyAV CCTTC 1 cut(s) 370
HpyCH4V TGCA 1 cut(s) 174
HpyF10VI GCNNNNNNNGC 2 cut(s) 215, 224
Hsp92II CATG 3 cut(s) 118, 280, 397
KspAI GTTAAC 1 cut(s) 78
Kzo9I GATC 1 cut(s) 230
LmnI GCTCC 2 cut(s) 9, 214
LpnPI CCDG 6 cut(s) 21, 146, 200, 213, 250, 320
LweI GCATC 1 cut(s) 52
MaeI CTAG 2 cut(s) 153, 389
MaeIII GTNAC 2 cut(s) 14, 268
MalI GATC 1 cut(s) 232
MboI GATC 1 cut(s) 230
MboII GAAGA 2 cut(s) 225, 383
MflI RGATCY 1 cut(s) 230
MluCI AATT 2 cut(s) 178, 289
MnlI CCTC 4 cut(s) 76, 289, 349, 394
MseI TTAA 3 cut(s) 77, 336, 351
MslI CAYNNNNRTG 4 cut(s) 119, 135, 194, 281
MspA1I CMGCKG 1 cut(s) 44
MspI CCGG 2 cut(s) 133, 237
MspR9I CCNGG 1 cut(s) 238
MwoI GCNNNNNNNGC 2 cut(s) 215, 224
NciI CCSGG 1 cut(s) 238
NdeI CATATG 1 cut(s) 161
NdeII GATC 1 cut(s) 230
NlaIII CATG 3 cut(s) 118, 280, 397
NlaIV GGNNCC 1 cut(s) 364
NmuCI GTSAC 1 cut(s) 268
NspI RCATGY 1 cut(s) 118
OliI CACNNNNGTG 1 cut(s) 194
PciI ACATGT 1 cut(s) 114
PfeI GAWTC 1 cut(s) 301
PinAI ACCGGT 1 cut(s) 132
PscI ACATGT 1 cut(s) 114
PspN4I GGNNCC 1 cut(s) 364
PsuI RGATCY 1 cut(s) 230
RseI CAYNNNNRTG 4 cut(s) 119, 135, 194, 281
SaqAI TTAA 3 cut(s) 77, 336, 351
Sau3AI GATC 1 cut(s) 230
ScrFI CCNGG 1 cut(s) 238
SetI ASST 6 cut(s) 29, 300, 322, 360, 381, 405
SfaNI GCATC 1 cut(s) 52
SmiMI CAYNNNNRTG 4 cut(s) 119, 135, 194, 281
Sse9I AATT 2 cut(s) 178, 289
SsiI CCGC 2 cut(s) 44, 212
SspMI CTAG 2 cut(s) 153, 389
StyD4I CCNGG 1 cut(s) 236
TasI AATT 2 cut(s) 178, 289
TfiI GAWTC 1 cut(s) 301
Tru1I TTAA 3 cut(s) 77, 336, 351
Tru9I TTAA 3 cut(s) 77, 336, 351
TscAI CASTG 1 cut(s) 61
TseFI GTSAC 1 cut(s) 268
Tsp45I GTSAC 1 cut(s) 268
TspDTI ATGAA 1 cut(s) 374
TspRI CASTG 1 cut(s) 61
XceI RCATGY 1 cut(s) 118
XmiI GTMKAC 1 cut(s) 311
XspI CTAG 2 cut(s) 153, 389
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.