Rh1AG332000

Protein of unknown function (DUF674)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1A
OG0000352
Physical Location & Seq
Forward (+)
56727132 .. 56727566
435 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1AG332000.1

Sequence Viewer

Length: 435 bp
ATGCAGCCAAATCTCAAGAAGGATGTCCTTCTAAAACCTAGGGCACCAGTTGGTGGTTCTGATAATGTTTTTCTTCCTTTGTTGACCAACAATGAATCAAATGCTAAGAAGTTTTACGTGTGTAAGCAGTCAAGCTGTGCATACCCCTACAACTATGTGTCCGATGACCCTAAAGCCATTTGTCCGAAGTGTCATCACTGTCATGGCCCCATGTCCAACCCGGCAAGGTATGTTGCTCCGCCAGCGACTACGGGAGAAAGGGCCAGCCATGGAGGCGGCTATGTGAGAGGCGTTGTTACGTACATGATAATGGATGATTTGGAAGTAAAGCCTATGTCCACCATTTCAAGTATAACTCTGCTTAACCACTTCAACGTTAAGGATGTTGGTACCCTTGAAGAGAAGGTGGTTCCTCTAGACATGGATAAGGTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF674

Protein Analysis

144

Amino Acids

15.83

Weight (kDa)

8.25

Isoelectric Point (pI)

40.84

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF674 PF05056 7 - 144 2.4e-13 Protein of unknown function (DUF674)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000352)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g24890 FvH4_7g21280 FvH4_7g21300 FvH4_7g21300 FvH4_7g21310 FvH4_7g21330 FvH4_7g21340 FvH4_7g21600 FvH4_7g21610 FvH4_7g21630
malus_domestica MD07G1190400.v1.1 MD07G1190600.v1.1
prunus_persica Prupe.2G228600_v2.0.a1 Prupe.6G198200_v2.0.a1
pyrus_communis pycom07g18010
rosa_chinensis RchiOBHm_Chr1g0365711 RchiOBHm_Chr1g0365721 RchiOBHm_Chr1g0365731 RchiOBHm_Chr1g0365991 RchiOBHm_Chr5g0044511 RchiOBHm_Chr6g0247041 RchiOBHm_Chr6g0247081
rosa_laevigata RLG00000015223 RLG00000027405 RLG00000027406 RLG00000027407 RLG00000027408 RLG00000027409 RLG00000027411 RLG00000027413 RLG00000034277
rosa_multiflora Rmu_co8279495.1_g000001 Rmu_co8358963.1_g000001 Rmu_co8520123.1_g000003 Rmu_sc0002093.1_g000019 Rmu_sc0002093.1_g000024 Rmu_sc0002093.1_g000025 Rmu_sc0002093.1_g000029 Rmu_sc0002476.1_g000002 Rmu_sc0002476.1_g000021 Rmu_sc0003466.1_g000011 Rmu_sc0004288.1_g000006 Rmu_sc0004288.1_g000007 Rmu_sc0004311.1_g000022 Rmu_sc0004311.1_g000023 Rmu_sc0004311.1_g000026 Rmu_sc0004311.1_g000033 Rmu_sc0004577.1_g000008 Rmu_sc0004645.1_g000005 Rmu_sc0004645.1_g000006 Rmu_sc0006406.1_g000011 Rmu_sc0006406.1_g000012 Rmu_sc0009967.1_g000002 Rmu_sc0011598.1_g000003 Rmu_ssc0000151.1_g000015
rosa_roxburghii Rroxscaffold_1G00036500 Rroxscaffold_3G00276050 Rroxscaffold_4G00290950 Rroxscaffold_4G00290960 Rroxscaffold_4G00290970 Rroxscaffold_4G00290980 Rroxscaffold_4G00291000 Rroxscaffold_4G00291030 Rroxscaffold_4G00291060
rosa_rugosa Rorug01G0322900 Rorug01G0323000 Rorug01G0323100 Rorug01G0323200 Rorug01G0323300 Rorug01G0323400 Rorug01G0323500 Rorug01G0323600 Rorug05G0214700 Rorug05G0522100
rosa_samantha Rh1AG332000 Rh1AG332200 Rh1AG332300 Rh1AG334700 Rh1AG334800 Rh1AG335200 Rh1CG309900 Rh1CG310000 Rh1CG310100 Rh1DG325100 Rh1DG325300 Rh1DG325500 Rh5AG299000 Rh5BG306500 Rh5DG315800 Rh6AG037200 Rh6BG031900 Rh6BG032000 Rh6CG032300 Rh6CG032400 Rh6CG033200 Rh6DG030900
rosa_wichuraiana Rw0G001530 Rw1G019070 Rw1G029470 Rw1G029480 Rw1G029490 Rw1G029500 Rw1G029510 Rw1G029700 Rw5G027640 Rw5G027670 Rw6G003160 Rw6G003190

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 389
AccB1I GGYRCC 2 cut(s) 43, 389
AccB7I CCANNNNNTGG 1 cut(s) 53
AciI CCGC 2 cut(s) 239, 276
AclI AACGTT 1 cut(s) 375
AfaI GTAC 2 cut(s) 302, 391
AfiI CCNNNNNNNGG 1 cut(s) 53
AflIII ACRYGT 1 cut(s) 117
AgsI TTSAA 3 cut(s) 348, 373, 398
AluBI AGCT 1 cut(s) 135
AluI AGCT 1 cut(s) 135
AoxI GGCC 2 cut(s) 205, 261
ApeKI GCWGC 1 cut(s) 4
Asp718I GGTACC 1 cut(s) 389
AspA2I CCTAGG 1 cut(s) 38
AspS9I GGNCC 2 cut(s) 206, 261
AsuC2I CCSGG 1 cut(s) 221
AvrII CCTAGG 1 cut(s) 38
BaeGI GKGCMC 1 cut(s) 46
BanI GGYRCC 2 cut(s) 43, 389
BbvI GCAGC 1 cut(s) 16
BcnI CCSGG 1 cut(s) 221
BfaI CTAG 2 cut(s) 39, 416
BglI GCCNNNNNGGC 1 cut(s) 273
BisI GCNGC 2 cut(s) 5, 277
BlnI CCTAGG 1 cut(s) 38
BlsI GCNGC 2 cut(s) 6, 278
Bme1390I CCNGG 1 cut(s) 221
BmgT120I GGNCC 2 cut(s) 206, 261
BmiI GGNNCC 4 cut(s) 45, 208, 391, 411
BmrFI CCNGG 1 cut(s) 221
BpuMI CCSGG 1 cut(s) 221
BsaAI YACGTR 2 cut(s) 118, 300
BsaJI CCNNGG 2 cut(s) 38, 268
Bsc4I CCNNNNNNNGG 1 cut(s) 53
Bse1I ACTGG 1 cut(s) 47
BseDI CCNNGG 2 cut(s) 38, 268
BseGI GGATG 3 cut(s) 28, 319, 388
BseLI CCNNNNNNNGG 1 cut(s) 53
BseNI ACTGG 1 cut(s) 47
BseSI GKGCMC 1 cut(s) 46
BseXI GCAGC 1 cut(s) 16
BshFI GGCC 2 cut(s) 207, 263
BshNI GGYRCC 2 cut(s) 43, 389
BsiSI CCGG 1 cut(s) 221
BslI CCNNNNNNNGG 1 cut(s) 53
BsnI GGCC 2 cut(s) 207, 263
Bsp1286I GDGCHC 1 cut(s) 46
Bsp19I CCATGG 1 cut(s) 268
BspACI CCGC 2 cut(s) 239, 276
BspANI GGCC 2 cut(s) 207, 263
BspLI GGNNCC 4 cut(s) 45, 208, 391, 411
BspT107I GGYRCC 2 cut(s) 43, 389
BsrI ACTGG 1 cut(s) 47
BssECI CCNNGG 2 cut(s) 38, 268
BssT1I CCWWGG 2 cut(s) 38, 268
Bst4CI ACNGT 1 cut(s) 200
Bst6I CTCTTC 1 cut(s) 393
BstBAI YACGTR 2 cut(s) 118, 300
BstC8I GCNNGC 2 cut(s) 243, 265
BstDEI CTNAG 1 cut(s) 105
BstDSI CCRYGG 1 cut(s) 268
BstF5I GGATG 3 cut(s) 28, 319, 388
BstMWI GCNNNNNNNGC 2 cut(s) 242, 273
BstSCI CCNGG 1 cut(s) 219
BstSLI GKGCMC 1 cut(s) 46
BstSNI TACGTA 1 cut(s) 300
BstV1I GCAGC 1 cut(s) 16
BsuRI GGCC 2 cut(s) 207, 263
BtgI CCRYGG 1 cut(s) 268
BtsCI GGATG 3 cut(s) 28, 319, 388
BtsIMutI CAGTG 1 cut(s) 196
Cac8I GCNNGC 2 cut(s) 243, 265
Cfr13I GGNCC 2 cut(s) 206, 261
Csp6I GTAC 2 cut(s) 301, 390
CviAII CATG 5 cut(s) 203, 211, 269, 304, 421
CviJI RGCY 8 cut(s) 7, 135, 176, 207, 263, 267, 279, 331
CviKI_1 RGCY 8 cut(s) 7, 135, 176, 207, 263, 267, 279, 331
CviQI GTAC 2 cut(s) 301, 390
DdeI CTNAG 1 cut(s) 105
Eam1104I CTCTTC 1 cut(s) 393
EarI CTCTTC 1 cut(s) 393
EciI GGCGGA 1 cut(s) 228
Eco105I TACGTA 1 cut(s) 300
Eco130I CCWWGG 2 cut(s) 38, 268
EcoT14I CCWWGG 2 cut(s) 38, 268
ErhI CCWWGG 2 cut(s) 38, 268
FaeI CATG 5 cut(s) 206, 214, 272, 307, 424
FatI CATG 5 cut(s) 202, 210, 268, 303, 420
Fnu4HI GCNGC 2 cut(s) 5, 277
FokI GGATG 3 cut(s) 35, 326, 395
Fsp4HI GCNGC 2 cut(s) 5, 277
FspBI CTAG 2 cut(s) 39, 416
GluI GCNGC 2 cut(s) 5, 277
HaeIII GGCC 2 cut(s) 207, 263
HapII CCGG 1 cut(s) 221
Hin1II CATG 5 cut(s) 206, 214, 272, 307, 424
HincII GTYRAC 1 cut(s) 84
HindII GTYRAC 1 cut(s) 84
HinfI GANTC 1 cut(s) 95
HpaII CCGG 1 cut(s) 221
Hpy166II GTNNAC 2 cut(s) 84, 339
Hpy188I TCNGA 3 cut(s) 61, 163, 186
Hpy188III TCNNGA 2 cut(s) 16, 416
Hpy8I GTNNAC 2 cut(s) 84, 339
HpyAV CCTTC 3 cut(s) 13, 38, 397
HpyCH4III ACNGT 1 cut(s) 200
HpyCH4IV ACGT 3 cut(s) 117, 299, 375
HpyCH4V TGCA 2 cut(s) 4, 140
HpyF10VI GCNNNNNNNGC 2 cut(s) 242, 273
HpyF3I CTNAG 1 cut(s) 105
HpySE526I ACGT 3 cut(s) 117, 299, 375
Hsp92II CATG 5 cut(s) 206, 214, 272, 307, 424
KpnI GGTACC 1 cut(s) 393
LmnI GCTCC 1 cut(s) 241
LpnPI CCDG 4 cut(s) 60, 234, 255, 277
Lsp1109I GCAGC 1 cut(s) 16
MaeI CTAG 2 cut(s) 39, 416
MaeII ACGT 3 cut(s) 117, 299, 375
MaeIII GTNAC 1 cut(s) 295
MboII GAAGA 2 cut(s) 65, 410
MhlI GDGCHC 1 cut(s) 46
MmeI TCCRAC 1 cut(s) 240
MnlI CCTC 3 cut(s) 266, 281, 423
MseI TTAA 2 cut(s) 363, 378
MslI CAYNNNNRTG 2 cut(s) 201, 308
MspI CCGG 1 cut(s) 221
MspR9I CCNGG 1 cut(s) 221
MwoI GCNNNNNNNGC 2 cut(s) 242, 273
NciI CCSGG 1 cut(s) 221
NcoI CCATGG 1 cut(s) 268
NlaIII CATG 5 cut(s) 206, 214, 272, 307, 424
NlaIV GGNNCC 4 cut(s) 45, 208, 391, 411
PfeI GAWTC 1 cut(s) 95
PflMI CCANNNNNTGG 1 cut(s) 53
PkrI GCNGC 2 cut(s) 6, 278
Ppu21I YACGTR 2 cut(s) 118, 300
Psp1406I AACGTT 1 cut(s) 375
PspN4I GGNNCC 4 cut(s) 45, 208, 391, 411
PspPI GGNCC 2 cut(s) 206, 261
RsaI GTAC 2 cut(s) 302, 391
RsaNI GTAC 2 cut(s) 301, 390
RseI CAYNNNNRTG 2 cut(s) 201, 308
SaqAI TTAA 2 cut(s) 363, 378
SatI GCNGC 2 cut(s) 5, 277
Sau96I GGNCC 2 cut(s) 206, 261
ScrFI CCNGG 1 cut(s) 221
SduI GDGCHC 1 cut(s) 46
SetI ASST 8 cut(s) 40, 120, 137, 230, 302, 378, 408, 432
SmiMI CAYNNNNRTG 2 cut(s) 201, 308
SmlI CTYRAG 1 cut(s) 14
SmoI CTYRAG 1 cut(s) 14
SnaBI TACGTA 1 cut(s) 300
SsiI CCGC 2 cut(s) 239, 276
SspMI CTAG 2 cut(s) 39, 416
StyD4I CCNGG 1 cut(s) 219
StyI CCWWGG 2 cut(s) 38, 268
TaaI ACNGT 1 cut(s) 200
TaiI ACGT 3 cut(s) 120, 302, 378
TauI GCSGC 1 cut(s) 279
TfiI GAWTC 1 cut(s) 95
Tru1I TTAA 2 cut(s) 363, 378
Tru9I TTAA 2 cut(s) 363, 378
TscAI CASTG 1 cut(s) 203
TseI GCWGC 1 cut(s) 4
TspDTI ATGAA 1 cut(s) 108
TspRI CASTG 1 cut(s) 203
Van91I CCANNNNNTGG 1 cut(s) 53
XbaI TCTAGA 1 cut(s) 415
XmaJI CCTAGG 1 cut(s) 38
XspI CTAG 2 cut(s) 39, 416
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.