Rmu_sc0004311.1_g000023

Protein of unknown function (DUF674)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0004311.1
OG0000352
Physical Location & Seq
Reverse (-)
82067 .. 82762
696 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0004311.1_g000023.1.cds

Sequence Viewer

Length: 696 bp
atggaaacccccaactctaaaaccctcaccgtgaagctcctcgtcgacaaaagaagccagaaggttttgttcgccgaagccggcaaggacttcgtggactttctcttcgcccttttatctttccccgtcggcactctggtccggcttctctccaaaaacggcatggtcggaagcctaggcaaactctacgagagcttcgaaaatctcaacgacatgtatatgcaacccaatctcaacagagaaatcctcctcaaacccaaagaaccagccggtgttcctaataacctaggcttgttgaccaacgtggaatctcgaaccatctatcactgttcaagaagaggctattctgataatcaccaatatgtttccgacgaccctaaagctacatgcccgtcgtgcccgtgcaaaatgagtgccaaggcgagttatgtgtctccagccggtgttacaaagacagaagaagggtttgtgaaaggggttgttacatatattgtaactgatgatttagaggtgaaacctaatgttaccattgccagtatccttcagctggaaaggttcaatgtcaagtgtatttgtgaccttgaagagaaggtcgtcaatgtaggcatggatgaggtacgtatttcttctcatattggatatttttctttttcaacttctcttcggccatacttagtattttcaatcatcaaatag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF674

Protein Analysis

231

Amino Acids

25.73

Weight (kDa)

8.14

Isoelectric Point (pI)

37.35

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000352)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g24890 FvH4_7g21280 FvH4_7g21300 FvH4_7g21300 FvH4_7g21310 FvH4_7g21330 FvH4_7g21340 FvH4_7g21600 FvH4_7g21610 FvH4_7g21630
malus_domestica MD07G1190400.v1.1 MD07G1190600.v1.1
prunus_persica Prupe.2G228600_v2.0.a1 Prupe.6G198200_v2.0.a1
pyrus_communis pycom07g18010
rosa_chinensis RchiOBHm_Chr1g0365711 RchiOBHm_Chr1g0365721 RchiOBHm_Chr1g0365731 RchiOBHm_Chr1g0365991 RchiOBHm_Chr5g0044511 RchiOBHm_Chr6g0247041 RchiOBHm_Chr6g0247081
rosa_laevigata RLG00000015223 RLG00000027405 RLG00000027406 RLG00000027407 RLG00000027408 RLG00000027409 RLG00000027411 RLG00000027413 RLG00000034277
rosa_multiflora Rmu_co8279495.1_g000001 Rmu_co8358963.1_g000001 Rmu_co8520123.1_g000003 Rmu_sc0002093.1_g000019 Rmu_sc0002093.1_g000024 Rmu_sc0002093.1_g000025 Rmu_sc0002093.1_g000029 Rmu_sc0002476.1_g000002 Rmu_sc0002476.1_g000021 Rmu_sc0003466.1_g000011 Rmu_sc0004288.1_g000006 Rmu_sc0004288.1_g000007 Rmu_sc0004311.1_g000022 Rmu_sc0004311.1_g000023 Rmu_sc0004311.1_g000026 Rmu_sc0004311.1_g000033 Rmu_sc0004577.1_g000008 Rmu_sc0004645.1_g000005 Rmu_sc0004645.1_g000006 Rmu_sc0006406.1_g000011 Rmu_sc0006406.1_g000012 Rmu_sc0009967.1_g000002 Rmu_sc0011598.1_g000003 Rmu_ssc0000151.1_g000015
rosa_roxburghii Rroxscaffold_1G00036500 Rroxscaffold_3G00276050 Rroxscaffold_4G00290950 Rroxscaffold_4G00290960 Rroxscaffold_4G00290970 Rroxscaffold_4G00290980 Rroxscaffold_4G00291000 Rroxscaffold_4G00291030 Rroxscaffold_4G00291060
rosa_rugosa Rorug01G0322900 Rorug01G0323000 Rorug01G0323100 Rorug01G0323200 Rorug01G0323300 Rorug01G0323400 Rorug01G0323500 Rorug01G0323600 Rorug05G0214700 Rorug05G0522100
rosa_samantha Rh1AG332000 Rh1AG332200 Rh1AG332300 Rh1AG334700 Rh1AG334800 Rh1AG335200 Rh1CG309900 Rh1CG310000 Rh1CG310100 Rh1DG325100 Rh1DG325300 Rh1DG325500 Rh5AG299000 Rh5BG306500 Rh5DG315800 Rh6AG037200 Rh6BG031900 Rh6BG032000 Rh6CG032300 Rh6CG032400 Rh6CG033200 Rh6DG030900
rosa_wichuraiana Rw0G001530 Rw1G019070 Rw1G029470 Rw1G029480 Rw1G029490 Rw1G029500 Rw1G029510 Rw1G029700 Rw5G027640 Rw5G027670 Rw6G003160 Rw6G003190

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 45
AcoI YGGCCR 1 cut(s) 665
AcuI CTGAAG 1 cut(s) 527
AfaI GTAC 1 cut(s) 618
AfiI CCNNNNNNNGG 1 cut(s) 547
AflIII ACRYGT 1 cut(s) 213
AgsI TTSAA 5 cut(s) 333, 559, 584, 654, 684
AluBI AGCT 4 cut(s) 37, 195, 383, 547
AluI AGCT 4 cut(s) 37, 195, 383, 547
Alw26I GTCTC 1 cut(s) 438
AoxI GGCC 1 cut(s) 665
ArsI GACNNNNNNTTYG 2 cut(s) 89, 121
AspA2I CCTAGG 2 cut(s) 175, 286
AspS9I GGNCC 1 cut(s) 139
AsuHPI GGTGA 3 cut(s) 19, 347, 523
AsuII TTCGAA 1 cut(s) 198
AvaII GGWCC 1 cut(s) 139
AvrII CCTAGG 2 cut(s) 175, 286
BaeGI GKGCMC 1 cut(s) 401
BccI CCATC 1 cut(s) 326
BceAI ACGGC 1 cut(s) 175
BcgI CGANNNNNNTGC 2 cut(s) 73, 107
BciVI GTATCC 1 cut(s) 548
BcoDI GTCTC 1 cut(s) 438
BfaI CTAG 2 cut(s) 176, 287
BfuI GTATCC 1 cut(s) 548
BlnI CCTAGG 2 cut(s) 175, 286
Bme18I GGWCC 1 cut(s) 139
BmgT120I GGNCC 1 cut(s) 139
BplI GAGNNNNNCTC 2 cut(s) 231, 263
BpmI CTGGAG 1 cut(s) 420
Bpu14I TTCGAA 1 cut(s) 198
BsaAI YACGTR 1 cut(s) 620
BsaJI CCNNGG 3 cut(s) 175, 286, 417
Bsc4I CCNNNNNNNGG 1 cut(s) 547
Bse118I RCCGGY 3 cut(s) 80, 269, 440
Bse1I ACTGG 1 cut(s) 534
Bse3DI GCAATG 1 cut(s) 528
BseDI CCNNGG 3 cut(s) 175, 286, 417
BseGI GGATG 1 cut(s) 616
BseLI CCNNNNNNNGG 1 cut(s) 547
BseMI GCAATG 1 cut(s) 528
BseNI ACTGG 1 cut(s) 534
BseRI GAGGAG 2 cut(s) 29, 239
BseSI GKGCMC 1 cut(s) 401
BshFI GGCC 1 cut(s) 667
BsiSI CCGG 4 cut(s) 81, 142, 270, 441
BslI CCNNNNNNNGG 1 cut(s) 547
BsmAI GTCTC 1 cut(s) 438
BsnI GGCC 1 cut(s) 667
Bsp119I TTCGAA 1 cut(s) 198
Bsp1286I GDGCHC 1 cut(s) 401
BspANI GGCC 1 cut(s) 667
BspT104I TTCGAA 1 cut(s) 198
BsrDI GCAATG 1 cut(s) 528
BsrFI RCCGGY 3 cut(s) 80, 269, 440
BsrI ACTGG 1 cut(s) 534
BssAI RCCGGY 3 cut(s) 80, 269, 440
BssECI CCNNGG 3 cut(s) 175, 286, 417
BssT1I CCWWGG 3 cut(s) 175, 286, 417
Bst4CI ACNGT 2 cut(s) 31, 329
Bst6I CTCTTC 4 cut(s) 110, 331, 579, 666
BstBAI YACGTR 1 cut(s) 620
BstBI TTCGAA 1 cut(s) 198
BstC8I GCNNGC 1 cut(s) 82
BstDEI CTNAG 1 cut(s) 673
BstF5I GGATG 1 cut(s) 616
BstMAI GTCTC 1 cut(s) 438
BstMWI GCNNNNNNNGC 1 cut(s) 396
BstNSI RCATGY 2 cut(s) 217, 390
BstSLI GKGCMC 1 cut(s) 401
BstSNI TACGTA 1 cut(s) 620
BsuI GTATCC 1 cut(s) 548
BsuRI GGCC 1 cut(s) 667
BtsCI GGATG 1 cut(s) 616
BtsIMutI CAGTG 1 cut(s) 325
Cac8I GCNNGC 1 cut(s) 82
Cfr10I RCCGGY 3 cut(s) 80, 269, 440
Cfr13I GGNCC 1 cut(s) 139
Csp6I GTAC 1 cut(s) 617
CviAII CATG 4 cut(s) 163, 214, 387, 607
CviQI GTAC 1 cut(s) 617
DdeI CTNAG 1 cut(s) 673
EaeI YGGCCR 1 cut(s) 665
Eam1104I CTCTTC 4 cut(s) 110, 331, 579, 666
EarI CTCTTC 4 cut(s) 110, 331, 579, 666
Eco105I TACGTA 1 cut(s) 620
Eco130I CCWWGG 3 cut(s) 175, 286, 417
Eco47I GGWCC 1 cut(s) 139
Eco57I CTGAAG 1 cut(s) 527
EcoT14I CCWWGG 3 cut(s) 175, 286, 417
ErhI CCWWGG 3 cut(s) 175, 286, 417
FaeI CATG 4 cut(s) 166, 217, 390, 610
FatI CATG 4 cut(s) 162, 213, 386, 606
FblI GTMKAC 1 cut(s) 45
FokI GGATG 1 cut(s) 623
FspBI CTAG 2 cut(s) 176, 287
GsuI CTGGAG 1 cut(s) 420
HaeIII GGCC 1 cut(s) 667
HapII CCGG 4 cut(s) 81, 142, 270, 441
Hin1II CATG 4 cut(s) 166, 217, 390, 610
HincII GTYRAC 2 cut(s) 46, 297
HindII GTYRAC 2 cut(s) 46, 297
HinfI GANTC 1 cut(s) 308
HpaII CCGG 4 cut(s) 81, 142, 270, 441
HphI GGTGA 3 cut(s) 19, 347, 523
Hpy166II GTNNAC 3 cut(s) 46, 97, 297
Hpy188I TCNGA 3 cut(s) 170, 349, 370
Hpy188III TCNNGA 2 cut(s) 312, 333
Hpy8I GTNNAC 3 cut(s) 46, 97, 297
Hpy99I CGWCG 4 cut(s) 47, 131, 374, 397
HpyAV CCTTC 4 cut(s) 55, 455, 551, 583
HpyCH4III ACNGT 2 cut(s) 31, 329
HpyCH4IV ACGT 2 cut(s) 303, 619
HpyCH4V TGCA 2 cut(s) 223, 405
HpyF10VI GCNNNNNNNGC 1 cut(s) 396
HpyF3I CTNAG 1 cut(s) 673
HpySE526I ACGT 2 cut(s) 303, 619
Hsp92II CATG 4 cut(s) 166, 217, 390, 610
KroI GCCGGC 1 cut(s) 80
KroNI GCCGGC 1 cut(s) 82
LmnI GCTCC 1 cut(s) 42
MaeI CTAG 2 cut(s) 176, 287
MaeII ACGT 2 cut(s) 303, 619
MaeIII GTNAC 5 cut(s) 445, 481, 493, 523, 575
MboII GAAGA 6 cut(s) 97, 348, 470, 596, 618, 653
MhlI GDGCHC 1 cut(s) 401
MmeI TCCRAC 2 cut(s) 148, 393
MnlI CCTC 7 cut(s) 35, 50, 257, 260, 332, 502, 607
MroNI GCCGGC 1 cut(s) 80
MslI CAYNNNNRTG 2 cut(s) 218, 360
MspA1I CMGCKG 1 cut(s) 547
MspI CCGG 4 cut(s) 81, 142, 270, 441
MwoI GCNNNNNNNGC 1 cut(s) 396
NaeI GCCGGC 1 cut(s) 82
NgoMIV GCCGGC 1 cut(s) 80
NlaIII CATG 4 cut(s) 166, 217, 390, 610
NmuCI GTSAC 1 cut(s) 575
NspI RCATGY 2 cut(s) 217, 390
NspV TTCGAA 1 cut(s) 198
PciI ACATGT 1 cut(s) 213
PcsI WCGNNNNNNNCGW 1 cut(s) 195
PdiI GCCGGC 1 cut(s) 82
PfeI GAWTC 1 cut(s) 308
Ppu21I YACGTR 1 cut(s) 620
PscI ACATGT 1 cut(s) 213
PspPI GGNCC 1 cut(s) 139
PvuII CAGCTG 1 cut(s) 547
RsaI GTAC 1 cut(s) 618
RsaNI GTAC 1 cut(s) 617
RseI CAYNNNNRTG 2 cut(s) 218, 360
SalI GTCGAC 1 cut(s) 44
Sau96I GGNCC 1 cut(s) 139
SduI GDGCHC 1 cut(s) 401
SfuI TTCGAA 1 cut(s) 198
SinI GGWCC 1 cut(s) 139
SmiMI CAYNNNNRTG 2 cut(s) 218, 360
SnaBI TACGTA 1 cut(s) 620
SspMI CTAG 2 cut(s) 176, 287
StyI CCWWGG 3 cut(s) 175, 286, 417
TaaI ACNGT 2 cut(s) 31, 329
TaiI ACGT 2 cut(s) 306, 622
TaqI TCGA 3 cut(s) 45, 198, 313
TfiI GAWTC 1 cut(s) 308
TscAI CASTG 1 cut(s) 332
TseFI GTSAC 1 cut(s) 575
Tsp45I GTSAC 1 cut(s) 575
TspRI CASTG 1 cut(s) 332
VpaK11BI GGWCC 1 cut(s) 139
XceI RCATGY 2 cut(s) 217, 390
XcmI CCANNNNNNNNNTGG 1 cut(s) 160
XmaJI CCTAGG 2 cut(s) 175, 286
XmiI GTMKAC 1 cut(s) 45
XspI CTAG 2 cut(s) 176, 287
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.