Rroxscaffold_3G00276050

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000003
OG0000352
Physical Location & Seq
Forward (+)
67334324 .. 67338267
3944 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_3G00276050.1

Sequence Viewer

Length: 219 bp
ATGGCAGTAGGTTTTAATAACCTGGAAGATAAGGTGGTTCATGTTGAAATGGATCAGGTAGAGAAATGGTTGAAGGCATTAATGAATGGAGTCAAACTCAGTTCTTACCGACCTCTTCCTTGGGAAGAAACCAATTGCTTGAGAAATGGTTGCAACTTTGAAGTTGGACCTCGAGATGGTAGTTGTGGTGGTGATGATGGAGGAGATGGAGTAGATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

72

Amino Acids

7.9

Weight (kDa)

4.52

Isoelectric Point (pI)

20.38

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000352)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g24890 FvH4_7g21280 FvH4_7g21300 FvH4_7g21300 FvH4_7g21310 FvH4_7g21330 FvH4_7g21340 FvH4_7g21600 FvH4_7g21610 FvH4_7g21630
malus_domestica MD07G1190400.v1.1 MD07G1190600.v1.1
prunus_persica Prupe.2G228600_v2.0.a1 Prupe.6G198200_v2.0.a1
pyrus_communis pycom07g18010
rosa_chinensis RchiOBHm_Chr1g0365711 RchiOBHm_Chr1g0365721 RchiOBHm_Chr1g0365731 RchiOBHm_Chr1g0365991 RchiOBHm_Chr5g0044511 RchiOBHm_Chr6g0247041 RchiOBHm_Chr6g0247081
rosa_laevigata RLG00000015223 RLG00000027405 RLG00000027406 RLG00000027407 RLG00000027408 RLG00000027409 RLG00000027411 RLG00000027413 RLG00000034277
rosa_multiflora Rmu_co8279495.1_g000001 Rmu_co8358963.1_g000001 Rmu_co8520123.1_g000003 Rmu_sc0002093.1_g000019 Rmu_sc0002093.1_g000024 Rmu_sc0002093.1_g000025 Rmu_sc0002093.1_g000029 Rmu_sc0002476.1_g000002 Rmu_sc0002476.1_g000021 Rmu_sc0003466.1_g000011 Rmu_sc0004288.1_g000006 Rmu_sc0004288.1_g000007 Rmu_sc0004311.1_g000022 Rmu_sc0004311.1_g000023 Rmu_sc0004311.1_g000026 Rmu_sc0004311.1_g000033 Rmu_sc0004577.1_g000008 Rmu_sc0004645.1_g000005 Rmu_sc0004645.1_g000006 Rmu_sc0006406.1_g000011 Rmu_sc0006406.1_g000012 Rmu_sc0009967.1_g000002 Rmu_sc0011598.1_g000003 Rmu_ssc0000151.1_g000015
rosa_roxburghii Rroxscaffold_1G00036500 Rroxscaffold_3G00276050 Rroxscaffold_4G00290950 Rroxscaffold_4G00290960 Rroxscaffold_4G00290970 Rroxscaffold_4G00290980 Rroxscaffold_4G00291000 Rroxscaffold_4G00291030 Rroxscaffold_4G00291060
rosa_rugosa Rorug01G0322900 Rorug01G0323000 Rorug01G0323100 Rorug01G0323200 Rorug01G0323300 Rorug01G0323400 Rorug01G0323500 Rorug01G0323600 Rorug05G0214700 Rorug05G0522100
rosa_samantha Rh1AG332000 Rh1AG332200 Rh1AG332300 Rh1AG334700 Rh1AG334800 Rh1AG335200 Rh1CG309900 Rh1CG310000 Rh1CG310100 Rh1DG325100 Rh1DG325300 Rh1DG325500 Rh5AG299000 Rh5BG306500 Rh5DG315800 Rh6AG037200 Rh6BG031900 Rh6BG032000 Rh6CG032300 Rh6CG032400 Rh6CG033200 Rh6DG030900
rosa_wichuraiana Rw0G001530 Rw1G019070 Rw1G029470 Rw1G029480 Rw1G029490 Rw1G029500 Rw1G029510 Rw1G029700 Rw5G027640 Rw5G027670 Rw6G003160 Rw6G003190

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 60
AfiI CCNNNNNNNGG 1 cut(s) 176
AgsI TTSAA 3 cut(s) 47, 73, 161
AjnI CCWGG 1 cut(s) 21
AlwI GGATC 1 cut(s) 60
Ama87I CYCGRG 1 cut(s) 171
AseI ATTAAT 1 cut(s) 80
AspS9I GGNCC 1 cut(s) 167
AsuHPI GGTGA 1 cut(s) 203
AvaI CYCGRG 1 cut(s) 171
AvaII GGWCC 1 cut(s) 167
BccI CCATC 3 cut(s) 170, 191, 200
BciT130I CCWGG 1 cut(s) 23
Bme1390I CCNGG 1 cut(s) 23
Bme18I GGWCC 1 cut(s) 167
BmeT110I CYCGRG 1 cut(s) 171
BmgT120I GGNCC 1 cut(s) 167
BmrFI CCNGG 1 cut(s) 23
BplI GAGNNNNNCTC 2 cut(s) 81, 113
BpuEI CTTGAG 1 cut(s) 160
BsaJI CCNNGG 1 cut(s) 119
BsaXI ACNNNNNCTCC 1 cut(s) 195
Bsc4I CCNNNNNNNGG 1 cut(s) 176
BseBI CCWGG 1 cut(s) 23
BseDI CCNNGG 1 cut(s) 119
BseLI CCNNNNNNNGG 1 cut(s) 176
BseMII CTCAG 1 cut(s) 112
BseRI GAGGAG 1 cut(s) 216
BsiHKCI CYCGRG 1 cut(s) 171
BslI CCNNNNNNNGG 1 cut(s) 176
BsoBI CYCGRG 1 cut(s) 171
Bsp143I GATC 1 cut(s) 52
BspCNI CTCAG 1 cut(s) 111
BspPI GGATC 1 cut(s) 60
BssECI CCNNGG 1 cut(s) 119
BssMI GATC 1 cut(s) 52
BssT1I CCWWGG 1 cut(s) 119
Bst2UI CCWGG 1 cut(s) 23
Bst6I CTCTTC 1 cut(s) 120
BstDEI CTNAG 1 cut(s) 98
BstKTI GATC 1 cut(s) 55
BstMBI GATC 1 cut(s) 52
BstNI CCWGG 1 cut(s) 23
BstSCI CCNGG 1 cut(s) 21
Cfr13I GGNCC 1 cut(s) 167
CviAII CATG 1 cut(s) 41
DdeI CTNAG 1 cut(s) 98
DpnI GATC 1 cut(s) 54
DpnII GATC 1 cut(s) 52
Eam1104I CTCTTC 1 cut(s) 120
EarI CTCTTC 1 cut(s) 120
Eco130I CCWWGG 1 cut(s) 119
Eco47I GGWCC 1 cut(s) 167
Eco88I CYCGRG 1 cut(s) 171
EcoRII CCWGG 1 cut(s) 21
EcoT14I CCWWGG 1 cut(s) 119
ErhI CCWWGG 1 cut(s) 119
FaeI CATG 1 cut(s) 44
FaiI YATR 1 cut(s) 42
FatI CATG 1 cut(s) 40
Hin1II CATG 1 cut(s) 44
HinfI GANTC 1 cut(s) 90
HphI GGTGA 1 cut(s) 203
Hpy188III TCNNGA 1 cut(s) 173
HpyAV CCTTC 1 cut(s) 67
HpyCH4V TGCA 1 cut(s) 153
HpyF3I CTNAG 1 cut(s) 98
Hsp92II CATG 1 cut(s) 44
Kzo9I GATC 1 cut(s) 52
LpnPI CCDG 3 cut(s) 8, 35, 41
MalI GATC 1 cut(s) 54
MboI GATC 1 cut(s) 52
MboII GAAGA 3 cut(s) 38, 107, 137
MfeI CAATTG 1 cut(s) 133
MluCI AATT 1 cut(s) 133
MlyI GAGTC 1 cut(s) 99
MmeI TCCRAC 1 cut(s) 145
MnlI CCTC 3 cut(s) 123, 180, 194
MseI TTAA 2 cut(s) 15, 80
MspR9I CCNGG 1 cut(s) 23
MunI CAATTG 1 cut(s) 133
MvaI CCWGG 1 cut(s) 23
NdeII GATC 1 cut(s) 52
NlaIII CATG 1 cut(s) 44
PaeR7I CTCGAG 1 cut(s) 171
PleI GAGTC 1 cut(s) 98
PpsI GAGTC 1 cut(s) 98
PshBI ATTAAT 1 cut(s) 80
Psp6I CCWGG 1 cut(s) 21
PspGI CCWGG 1 cut(s) 21
PspPI GGNCC 1 cut(s) 167
SaqAI TTAA 2 cut(s) 15, 80
Sau3AI GATC 1 cut(s) 52
Sau96I GGNCC 1 cut(s) 167
SchI GAGTC 1 cut(s) 99
ScrFI CCNGG 1 cut(s) 23
SetI ASST 6 cut(s) 13, 24, 36, 60, 115, 172
Sfr274I CTCGAG 1 cut(s) 171
SgeI CNNG 8 cut(s) 34, 35, 53, 68, 132, 151, 183, 185
SinI GGWCC 1 cut(s) 167
SlaI CTCGAG 1 cut(s) 171
SmlI CTYRAG 2 cut(s) 139, 171
SmoI CTYRAG 2 cut(s) 139, 171
Sse9I AATT 1 cut(s) 133
StyD4I CCNGG 1 cut(s) 21
StyI CCWWGG 1 cut(s) 119
TaqI TCGA 1 cut(s) 172
TasI AATT 1 cut(s) 133
Tru1I TTAA 2 cut(s) 15, 80
Tru9I TTAA 2 cut(s) 15, 80
TspDTI ATGAA 2 cut(s) 29, 98
VpaK11BI GGWCC 1 cut(s) 167
VspI ATTAAT 1 cut(s) 80
XhoI CTCGAG 1 cut(s) 171
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.