Rh1AG334700

Protein of unknown function (DUF674)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1A
OG0000352
Physical Location & Seq
Forward (+)
56900415 .. 56902713
2299 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1AG334700.1

Sequence Viewer

Length: 357 bp
ATGTCCATCGTGTTCACAAGCCATGAACCTCTGACTACTTATGTCAATCAGCCAACTACCACGGAAGCAACTTCTGGTGCTGGCGCTGCTGGATATGTTAAAGGCGTTGTGAAATACATGATAATGGATGATCTGGAGATGAAGCCCATGTCCACCATTTCAAGCATCACTATGCTTAACAGATTCAATATCAAGGATGTTGGGGCCCTAGAAGAGAAGGTTGTTGAACTTGGCATGGATGAGGGTGTGTTGAAGGAGTCTCTGCAGTCCAAATCTGTCCTAATAAATGTCTTCCTTGGGAAGAAAGCTGGGATTGGCATTGATATCTTGGAGCAACTACGTAAAGGGTTTTTATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF674

Protein Analysis

118

Amino Acids

12.83

Weight (kDa)

5.37

Isoelectric Point (pI)

34.64

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF674 PF05056 27 - 102 4e-11 Protein of unknown function (DUF674)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000352)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g24890 FvH4_7g21280 FvH4_7g21300 FvH4_7g21300 FvH4_7g21310 FvH4_7g21330 FvH4_7g21340 FvH4_7g21600 FvH4_7g21610 FvH4_7g21630
malus_domestica MD07G1190400.v1.1 MD07G1190600.v1.1
prunus_persica Prupe.2G228600_v2.0.a1 Prupe.6G198200_v2.0.a1
pyrus_communis pycom07g18010
rosa_chinensis RchiOBHm_Chr1g0365711 RchiOBHm_Chr1g0365721 RchiOBHm_Chr1g0365731 RchiOBHm_Chr1g0365991 RchiOBHm_Chr5g0044511 RchiOBHm_Chr6g0247041 RchiOBHm_Chr6g0247081
rosa_laevigata RLG00000015223 RLG00000027405 RLG00000027406 RLG00000027407 RLG00000027408 RLG00000027409 RLG00000027411 RLG00000027413 RLG00000034277
rosa_multiflora Rmu_co8279495.1_g000001 Rmu_co8358963.1_g000001 Rmu_co8520123.1_g000003 Rmu_sc0002093.1_g000019 Rmu_sc0002093.1_g000024 Rmu_sc0002093.1_g000025 Rmu_sc0002093.1_g000029 Rmu_sc0002476.1_g000002 Rmu_sc0002476.1_g000021 Rmu_sc0003466.1_g000011 Rmu_sc0004288.1_g000006 Rmu_sc0004288.1_g000007 Rmu_sc0004311.1_g000022 Rmu_sc0004311.1_g000023 Rmu_sc0004311.1_g000026 Rmu_sc0004311.1_g000033 Rmu_sc0004577.1_g000008 Rmu_sc0004645.1_g000005 Rmu_sc0004645.1_g000006 Rmu_sc0006406.1_g000011 Rmu_sc0006406.1_g000012 Rmu_sc0009967.1_g000002 Rmu_sc0011598.1_g000003 Rmu_ssc0000151.1_g000015
rosa_roxburghii Rroxscaffold_1G00036500 Rroxscaffold_3G00276050 Rroxscaffold_4G00290950 Rroxscaffold_4G00290960 Rroxscaffold_4G00290970 Rroxscaffold_4G00290980 Rroxscaffold_4G00291000 Rroxscaffold_4G00291030 Rroxscaffold_4G00291060
rosa_rugosa Rorug01G0322900 Rorug01G0323000 Rorug01G0323100 Rorug01G0323200 Rorug01G0323300 Rorug01G0323400 Rorug01G0323500 Rorug01G0323600 Rorug05G0214700 Rorug05G0522100
rosa_samantha Rh1AG332000 Rh1AG332200 Rh1AG332300 Rh1AG334700 Rh1AG334800 Rh1AG335200 Rh1CG309900 Rh1CG310000 Rh1CG310100 Rh1DG325100 Rh1DG325300 Rh1DG325500 Rh5AG299000 Rh5BG306500 Rh5DG315800 Rh6AG037200 Rh6BG031900 Rh6BG032000 Rh6CG032300 Rh6CG032400 Rh6CG033200 Rh6DG030900
rosa_wichuraiana Rw0G001530 Rw1G019070 Rw1G029470 Rw1G029480 Rw1G029490 Rw1G029500 Rw1G029510 Rw1G029700 Rw5G027640 Rw5G027670 Rw6G003160 Rw6G003190

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AgsI TTSAA 4 cut(s) 162, 187, 227, 253
AluBI AGCT 1 cut(s) 308
AluI AGCT 1 cut(s) 308
Alw26I GTCTC 1 cut(s) 264
AoxI GGCC 1 cut(s) 204
ApaI GGGCCC 1 cut(s) 208
ApeKI GCWGC 1 cut(s) 86
AspLEI GCGC 1 cut(s) 86
AspS9I GGNCC 2 cut(s) 204, 205
BaeGI GKGCMC 1 cut(s) 208
BanII GRGCYC 1 cut(s) 208
BbsI GAAGAC 1 cut(s) 283
BbvI GCAGC 1 cut(s) 73
BccI CCATC 1 cut(s) 14
BcoDI GTCTC 1 cut(s) 264
BfaI CTAG 1 cut(s) 209
BfmI CTRYAG 1 cut(s) 263
BfoI RGCGCY 1 cut(s) 87
BisI GCNGC 1 cut(s) 87
BlsI GCNGC 1 cut(s) 88
BmgT120I GGNCC 2 cut(s) 204, 205
BmiI GGNNCC 2 cut(s) 205, 206
BmsI GCATC 1 cut(s) 174
BpiI GAAGAC 1 cut(s) 283
BpmI CTGGAG 1 cut(s) 155
BsaAI YACGTR 1 cut(s) 341
BsaJI CCNNGG 2 cut(s) 60, 295
BseDI CCNNGG 2 cut(s) 60, 295
BseGI GGATG 3 cut(s) 133, 202, 244
BseSI GKGCMC 1 cut(s) 208
BseXI GCAGC 1 cut(s) 73
BseYI CCCAGC 1 cut(s) 308
BshFI GGCC 1 cut(s) 206
BsmAI GTCTC 1 cut(s) 264
BsnI GGCC 1 cut(s) 206
Bsp120I GGGCCC 1 cut(s) 204
Bsp1286I GDGCHC 1 cut(s) 208
Bsp143I GATC 1 cut(s) 130
BspANI GGCC 1 cut(s) 206
BspLI GGNNCC 2 cut(s) 205, 206
BspMAI CTGCAG 1 cut(s) 267
BssECI CCNNGG 2 cut(s) 60, 295
BssMI GATC 1 cut(s) 130
BssT1I CCWWGG 1 cut(s) 295
Bst6I CTCTTC 1 cut(s) 207
BstBAI YACGTR 1 cut(s) 341
BstC8I GCNNGC 1 cut(s) 82
BstDSI CCRYGG 1 cut(s) 60
BstF5I GGATG 3 cut(s) 133, 202, 244
BstH2I RGCGCY 1 cut(s) 87
BstHHI GCGC 1 cut(s) 86
BstKTI GATC 1 cut(s) 133
BstMAI GTCTC 1 cut(s) 264
BstMBI GATC 1 cut(s) 130
BstMWI GCNNNNNNNGC 1 cut(s) 86
BstSFI CTRYAG 1 cut(s) 263
BstSLI GKGCMC 1 cut(s) 208
BstSNI TACGTA 1 cut(s) 341
BstV1I GCAGC 1 cut(s) 73
BstV2I GAAGAC 1 cut(s) 283
BsuRI GGCC 1 cut(s) 206
BtgI CCRYGG 1 cut(s) 60
BtsCI GGATG 3 cut(s) 133, 202, 244
Cac8I GCNNGC 1 cut(s) 82
CfoI GCGC 1 cut(s) 86
Cfr13I GGNCC 2 cut(s) 204, 205
CviAII CATG 4 cut(s) 23, 118, 148, 235
CviJI RGCY 5 cut(s) 21, 52, 145, 206, 308
CviKI_1 RGCY 5 cut(s) 21, 52, 145, 206, 308
DpnI GATC 1 cut(s) 132
DpnII GATC 1 cut(s) 130
Eam1104I CTCTTC 1 cut(s) 207
EarI CTCTTC 1 cut(s) 207
Eco105I TACGTA 1 cut(s) 341
Eco130I CCWWGG 1 cut(s) 295
Eco24I GRGCYC 1 cut(s) 208
Eco32I GATATC 1 cut(s) 325
EcoO109I RGGNCCY 2 cut(s) 204, 205
EcoRV GATATC 1 cut(s) 325
EcoT14I CCWWGG 1 cut(s) 295
EcoT38I GRGCYC 1 cut(s) 208
ErhI CCWWGG 1 cut(s) 295
FaeI CATG 4 cut(s) 26, 121, 151, 238
FaiI YATR 8 cut(s) 24, 42, 96, 119, 149, 173, 236, 355
FatI CATG 4 cut(s) 22, 117, 147, 234
Fnu4HI GCNGC 1 cut(s) 87
FokI GGATG 3 cut(s) 140, 209, 251
FriOI GRGCYC 1 cut(s) 208
Fsp4HI GCNGC 1 cut(s) 87
FspBI CTAG 1 cut(s) 209
GlaI GCGC 1 cut(s) 85
GluI GCNGC 1 cut(s) 87
GsaI CCCAGC 1 cut(s) 312
GsuI CTGGAG 1 cut(s) 155
HaeII RGCGCY 1 cut(s) 87
HaeIII GGCC 1 cut(s) 206
HhaI GCGC 1 cut(s) 86
Hin1II CATG 4 cut(s) 26, 121, 151, 238
Hin6I GCGC 1 cut(s) 84
HinP1I GCGC 1 cut(s) 84
HinfI GANTC 2 cut(s) 183, 257
Hpy166II GTNNAC 2 cut(s) 15, 153
Hpy188I TCNGA 1 cut(s) 33
Hpy188III TCNNGA 1 cut(s) 134
Hpy8I GTNNAC 2 cut(s) 15, 153
HpyAV CCTTC 2 cut(s) 211, 247
HpyCH4IV ACGT 1 cut(s) 340
HpyCH4V TGCA 1 cut(s) 265
HpyF10VI GCNNNNNNNGC 1 cut(s) 86
HpySE526I ACGT 1 cut(s) 340
Hsp92II CATG 4 cut(s) 26, 121, 151, 238
HspAI GCGC 1 cut(s) 84
Kzo9I GATC 1 cut(s) 130
LmnI GCTCC 1 cut(s) 331
LpnPI CCDG 5 cut(s) 60, 66, 75, 119, 294
Lsp1109I GCAGC 1 cut(s) 73
LweI GCATC 1 cut(s) 174
MaeI CTAG 1 cut(s) 209
MaeII ACGT 1 cut(s) 340
MalI GATC 1 cut(s) 132
MboI GATC 1 cut(s) 130
MboII GAAGA 3 cut(s) 224, 283, 313
MhlI GDGCHC 1 cut(s) 208
MlyI GAGTC 1 cut(s) 266
MnlI CCTC 2 cut(s) 39, 235
MseI TTAA 2 cut(s) 99, 177
MslI CAYNNNNRTG 2 cut(s) 122, 170
MwoI GCNNNNNNNGC 1 cut(s) 86
NdeII GATC 1 cut(s) 130
NlaIII CATG 4 cut(s) 26, 121, 151, 238
NlaIV GGNNCC 2 cut(s) 205, 206
PfeI GAWTC 1 cut(s) 183
PkrI GCNGC 1 cut(s) 88
PleI GAGTC 1 cut(s) 265
PpsI GAGTC 1 cut(s) 265
Ppu21I YACGTR 1 cut(s) 341
PspFI CCCAGC 1 cut(s) 308
PspN4I GGNNCC 2 cut(s) 205, 206
PspOMI GGGCCC 1 cut(s) 204
PspPI GGNCC 2 cut(s) 204, 205
PstI CTGCAG 1 cut(s) 267
RseI CAYNNNNRTG 2 cut(s) 122, 170
SaqAI TTAA 2 cut(s) 99, 177
SatI GCNGC 1 cut(s) 87
Sau3AI GATC 1 cut(s) 130
Sau96I GGNCC 2 cut(s) 204, 205
SchI GAGTC 1 cut(s) 266
SduI GDGCHC 1 cut(s) 208
SetI ASST 4 cut(s) 31, 222, 310, 343
SfaNI GCATC 1 cut(s) 174
SfcI CTRYAG 1 cut(s) 263
SmiMI CAYNNNNRTG 2 cut(s) 122, 170
SnaBI TACGTA 1 cut(s) 341
SspMI CTAG 1 cut(s) 209
StyI CCWWGG 1 cut(s) 295
TaiI ACGT 1 cut(s) 343
TfiI GAWTC 1 cut(s) 183
Tru1I TTAA 2 cut(s) 99, 177
Tru9I TTAA 2 cut(s) 99, 177
TseI GCWGC 1 cut(s) 86
TspDTI ATGAA 2 cut(s) 39, 155
TspGWI ACGGA 1 cut(s) 77
XspI CTAG 1 cut(s) 209
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.