Rroxscaffold_4G00290980

Protein of unknown function (DUF674)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000004
OG0000352
Physical Location & Seq
Reverse (-)
11411936 .. 11413816
1881 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_4G00290980.1

Sequence Viewer

Length: 225 bp
ATGGACATCGTGTTCATACGCCATGAACCTCCGACTACTTATGTTGGTCAGCCGACTACCATGGAAGCAACTTCTGGTGCCGGCACTACTGGATATGTCAAAGGCGTTGGTGTGAAGCTGTTGAAGGAGTCTCTGCAGTCCAAATCTGTCCTAACAAATGTCTTCCTTGGGAAGAAAGCTGGGATTGGCATTGATAACTTGGAGCAACTACGTAAAGGGTTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF674

Protein Analysis

74

Amino Acids

7.93

Weight (kDa)

9.46

Isoelectric Point (pI)

19.56

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000352)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g24890 FvH4_7g21280 FvH4_7g21300 FvH4_7g21300 FvH4_7g21310 FvH4_7g21330 FvH4_7g21340 FvH4_7g21600 FvH4_7g21610 FvH4_7g21630
malus_domestica MD07G1190400.v1.1 MD07G1190600.v1.1
prunus_persica Prupe.2G228600_v2.0.a1 Prupe.6G198200_v2.0.a1
pyrus_communis pycom07g18010
rosa_chinensis RchiOBHm_Chr1g0365711 RchiOBHm_Chr1g0365721 RchiOBHm_Chr1g0365731 RchiOBHm_Chr1g0365991 RchiOBHm_Chr5g0044511 RchiOBHm_Chr6g0247041 RchiOBHm_Chr6g0247081
rosa_laevigata RLG00000015223 RLG00000027405 RLG00000027406 RLG00000027407 RLG00000027408 RLG00000027409 RLG00000027411 RLG00000027413 RLG00000034277
rosa_multiflora Rmu_co8279495.1_g000001 Rmu_co8358963.1_g000001 Rmu_co8520123.1_g000003 Rmu_sc0002093.1_g000019 Rmu_sc0002093.1_g000024 Rmu_sc0002093.1_g000025 Rmu_sc0002093.1_g000029 Rmu_sc0002476.1_g000002 Rmu_sc0002476.1_g000021 Rmu_sc0003466.1_g000011 Rmu_sc0004288.1_g000006 Rmu_sc0004288.1_g000007 Rmu_sc0004311.1_g000022 Rmu_sc0004311.1_g000023 Rmu_sc0004311.1_g000026 Rmu_sc0004311.1_g000033 Rmu_sc0004577.1_g000008 Rmu_sc0004645.1_g000005 Rmu_sc0004645.1_g000006 Rmu_sc0006406.1_g000011 Rmu_sc0006406.1_g000012 Rmu_sc0009967.1_g000002 Rmu_sc0011598.1_g000003 Rmu_ssc0000151.1_g000015
rosa_roxburghii Rroxscaffold_1G00036500 Rroxscaffold_3G00276050 Rroxscaffold_4G00290950 Rroxscaffold_4G00290960 Rroxscaffold_4G00290970 Rroxscaffold_4G00290980 Rroxscaffold_4G00291000 Rroxscaffold_4G00291030 Rroxscaffold_4G00291060
rosa_rugosa Rorug01G0322900 Rorug01G0323000 Rorug01G0323100 Rorug01G0323200 Rorug01G0323300 Rorug01G0323400 Rorug01G0323500 Rorug01G0323600 Rorug05G0214700 Rorug05G0522100
rosa_samantha Rh1AG332000 Rh1AG332200 Rh1AG332300 Rh1AG334700 Rh1AG334800 Rh1AG335200 Rh1CG309900 Rh1CG310000 Rh1CG310100 Rh1DG325100 Rh1DG325300 Rh1DG325500 Rh5AG299000 Rh5BG306500 Rh5DG315800 Rh6AG037200 Rh6BG031900 Rh6BG032000 Rh6CG032300 Rh6CG032400 Rh6CG033200 Rh6DG030900
rosa_wichuraiana Rw0G001530 Rw1G019070 Rw1G029470 Rw1G029480 Rw1G029490 Rw1G029500 Rw1G029510 Rw1G029700 Rw5G027640 Rw5G027670 Rw6G003160 Rw6G003190

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 77
AgsI TTSAA 1 cut(s) 124
AloI GAACNNNNNNTCC 1 cut(s) 28
AluBI AGCT 2 cut(s) 118, 179
AluI AGCT 2 cut(s) 118, 179
Alw26I GTCTC 1 cut(s) 135
BanI GGYRCC 1 cut(s) 77
BbsI GAAGAC 1 cut(s) 154
BcoDI GTCTC 1 cut(s) 135
BfmI CTRYAG 1 cut(s) 134
BmiI GGNNCC 1 cut(s) 79
BpiI GAAGAC 1 cut(s) 154
BsaAI YACGTR 1 cut(s) 212
BsaJI CCNNGG 2 cut(s) 60, 166
Bse118I RCCGGY 1 cut(s) 80
Bse1I ACTGG 1 cut(s) 94
BseDI CCNNGG 2 cut(s) 60, 166
BseNI ACTGG 1 cut(s) 94
BseYI CCCAGC 1 cut(s) 179
BshNI GGYRCC 1 cut(s) 77
BsiSI CCGG 1 cut(s) 81
BsmAI GTCTC 1 cut(s) 135
Bsp19I CCATGG 1 cut(s) 60
BspLI GGNNCC 1 cut(s) 79
BspMAI CTGCAG 1 cut(s) 138
BspT107I GGYRCC 1 cut(s) 77
BsrFI RCCGGY 1 cut(s) 80
BsrI ACTGG 1 cut(s) 94
BssAI RCCGGY 1 cut(s) 80
BssECI CCNNGG 2 cut(s) 60, 166
BssT1I CCWWGG 2 cut(s) 60, 166
BstBAI YACGTR 1 cut(s) 212
BstC8I GCNNGC 1 cut(s) 82
BstDSI CCRYGG 1 cut(s) 60
BstMAI GTCTC 1 cut(s) 135
BstSFI CTRYAG 1 cut(s) 134
BstSNI TACGTA 1 cut(s) 212
BstV2I GAAGAC 1 cut(s) 154
BtgI CCRYGG 1 cut(s) 60
Cac8I GCNNGC 1 cut(s) 82
Cfr10I RCCGGY 1 cut(s) 80
CviAII CATG 2 cut(s) 23, 61
CviJI RGCY 3 cut(s) 52, 118, 179
CviKI_1 RGCY 3 cut(s) 52, 118, 179
Eco105I TACGTA 1 cut(s) 212
Eco130I CCWWGG 2 cut(s) 60, 166
EcoT14I CCWWGG 2 cut(s) 60, 166
ErhI CCWWGG 2 cut(s) 60, 166
FaeI CATG 2 cut(s) 26, 64
FaiI YATR 5 cut(s) 17, 24, 42, 62, 96
FatI CATG 2 cut(s) 22, 60
GsaI CCCAGC 1 cut(s) 183
HapII CCGG 1 cut(s) 81
Hin1II CATG 2 cut(s) 26, 64
HinfI GANTC 1 cut(s) 128
HpaII CCGG 1 cut(s) 81
Hpy188I TCNGA 1 cut(s) 33
HpyAV CCTTC 1 cut(s) 118
HpyCH4IV ACGT 1 cut(s) 211
HpyCH4V TGCA 1 cut(s) 136
HpySE526I ACGT 1 cut(s) 211
Hsp92II CATG 2 cut(s) 26, 64
KroI GCCGGC 1 cut(s) 80
KroNI GCCGGC 1 cut(s) 82
LmnI GCTCC 1 cut(s) 202
LpnPI CCDG 4 cut(s) 60, 75, 94, 165
MaeII ACGT 1 cut(s) 211
MboII GAAGA 2 cut(s) 154, 184
MlyI GAGTC 1 cut(s) 137
MmeI TCCRAC 1 cut(s) 56
MnlI CCTC 1 cut(s) 39
MroNI GCCGGC 1 cut(s) 80
MseI TTAA 1 cut(s) 223
MspI CCGG 1 cut(s) 81
NaeI GCCGGC 1 cut(s) 82
NcoI CCATGG 1 cut(s) 60
NgoMIV GCCGGC 1 cut(s) 80
NlaIII CATG 2 cut(s) 26, 64
NlaIV GGNNCC 1 cut(s) 79
PdiI GCCGGC 1 cut(s) 82
PleI GAGTC 1 cut(s) 136
PpsI GAGTC 1 cut(s) 136
Ppu21I YACGTR 1 cut(s) 212
PspFI CCCAGC 1 cut(s) 179
PspN4I GGNNCC 1 cut(s) 79
PstI CTGCAG 1 cut(s) 138
SaqAI TTAA 1 cut(s) 223
SchI GAGTC 1 cut(s) 137
SetI ASST 4 cut(s) 31, 120, 181, 214
SfcI CTRYAG 1 cut(s) 134
SgeI CNNG 9 cut(s) 22, 35, 73, 87, 93, 102, 179, 192, 211
SnaBI TACGTA 1 cut(s) 212
StyI CCWWGG 2 cut(s) 60, 166
TaiI ACGT 1 cut(s) 214
Tru1I TTAA 1 cut(s) 223
Tru9I TTAA 1 cut(s) 223
TspDTI ATGAA 2 cut(s) 4, 39
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.