RchiOBHm_Chr6g0247041

Protein of unknown function (DUF674)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
OG0000352
Physical Location & Seq
Reverse (-)
2807399 .. 2808064
666 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ22145

Sequence Viewer

Length: 123 bp
ATGTTCCCCATGGATGAGGGTGTGAAGTTGCTTAAGGAATCATTGCAGTCAAAGTCAGTTCTAACCAATGTGTTTCTGAGAGGAATGACTAAATCAGATCTAAAACCAGTACTTAACTACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF674

Protein Analysis

40

Amino Acids

4.56

Weight (kDa)

9.3

Isoelectric Point (pI)

30.69

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000352)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g24890 FvH4_7g21280 FvH4_7g21300 FvH4_7g21300 FvH4_7g21310 FvH4_7g21330 FvH4_7g21340 FvH4_7g21600 FvH4_7g21610 FvH4_7g21630
malus_domestica MD07G1190400.v1.1 MD07G1190600.v1.1
prunus_persica Prupe.2G228600_v2.0.a1 Prupe.6G198200_v2.0.a1
pyrus_communis pycom07g18010
rosa_chinensis RchiOBHm_Chr1g0365711 RchiOBHm_Chr1g0365721 RchiOBHm_Chr1g0365731 RchiOBHm_Chr1g0365991 RchiOBHm_Chr5g0044511 RchiOBHm_Chr6g0247041 RchiOBHm_Chr6g0247081
rosa_laevigata RLG00000015223 RLG00000027405 RLG00000027406 RLG00000027407 RLG00000027408 RLG00000027409 RLG00000027411 RLG00000027413 RLG00000034277
rosa_multiflora Rmu_co8279495.1_g000001 Rmu_co8358963.1_g000001 Rmu_co8520123.1_g000003 Rmu_sc0002093.1_g000019 Rmu_sc0002093.1_g000024 Rmu_sc0002093.1_g000025 Rmu_sc0002093.1_g000029 Rmu_sc0002476.1_g000002 Rmu_sc0002476.1_g000021 Rmu_sc0003466.1_g000011 Rmu_sc0004288.1_g000006 Rmu_sc0004288.1_g000007 Rmu_sc0004311.1_g000022 Rmu_sc0004311.1_g000023 Rmu_sc0004311.1_g000026 Rmu_sc0004311.1_g000033 Rmu_sc0004577.1_g000008 Rmu_sc0004645.1_g000005 Rmu_sc0004645.1_g000006 Rmu_sc0006406.1_g000011 Rmu_sc0006406.1_g000012 Rmu_sc0009967.1_g000002 Rmu_sc0011598.1_g000003 Rmu_ssc0000151.1_g000015
rosa_roxburghii Rroxscaffold_1G00036500 Rroxscaffold_3G00276050 Rroxscaffold_4G00290950 Rroxscaffold_4G00290960 Rroxscaffold_4G00290970 Rroxscaffold_4G00290980 Rroxscaffold_4G00291000 Rroxscaffold_4G00291030 Rroxscaffold_4G00291060
rosa_rugosa Rorug01G0322900 Rorug01G0323000 Rorug01G0323100 Rorug01G0323200 Rorug01G0323300 Rorug01G0323400 Rorug01G0323500 Rorug01G0323600 Rorug05G0214700 Rorug05G0522100
rosa_samantha Rh1AG332000 Rh1AG332200 Rh1AG332300 Rh1AG334700 Rh1AG334800 Rh1AG335200 Rh1CG309900 Rh1CG310000 Rh1CG310100 Rh1DG325100 Rh1DG325300 Rh1DG325500 Rh5AG299000 Rh5BG306500 Rh5DG315800 Rh6AG037200 Rh6BG031900 Rh6BG032000 Rh6CG032300 Rh6CG032400 Rh6CG033200 Rh6DG030900
rosa_wichuraiana Rw0G001530 Rw1G019070 Rw1G029470 Rw1G029480 Rw1G029490 Rw1G029500 Rw1G029510 Rw1G029700 Rw5G027640 Rw5G027670 Rw6G003160 Rw6G003190

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AfaI GTAC 1 cut(s) 111
AflII CTTAAG 1 cut(s) 32
BfrI CTTAAG 1 cut(s) 32
BglII AGATCT 1 cut(s) 97
BmcAI AGTACT 1 cut(s) 111
BsaJI CCNNGG 1 cut(s) 9
Bse1I ACTGG 1 cut(s) 107
Bse3DI GCAATG 1 cut(s) 41
BseDI CCNNGG 1 cut(s) 9
BseGI GGATG 1 cut(s) 19
BseMI GCAATG 1 cut(s) 41
BseMII CTCAG 1 cut(s) 68
BseNI ACTGG 1 cut(s) 107
Bsp143I GATC 1 cut(s) 97
Bsp19I CCATGG 1 cut(s) 9
BspCNI CTCAG 1 cut(s) 69
BspTI CTTAAG 1 cut(s) 32
BsrDI GCAATG 1 cut(s) 41
BsrI ACTGG 1 cut(s) 107
BssECI CCNNGG 1 cut(s) 9
BssMI GATC 1 cut(s) 97
BssT1I CCWWGG 1 cut(s) 9
BstAFI CTTAAG 1 cut(s) 32
BstDEI CTNAG 1 cut(s) 77
BstDSI CCRYGG 1 cut(s) 9
BstF5I GGATG 1 cut(s) 19
BstKTI GATC 1 cut(s) 100
BstMBI GATC 1 cut(s) 97
BstX2I RGATCY 1 cut(s) 97
BstYI RGATCY 1 cut(s) 97
BtgI CCRYGG 1 cut(s) 9
BtsCI GGATG 1 cut(s) 19
Csp6I GTAC 1 cut(s) 110
CviAII CATG 1 cut(s) 10
CviQI GTAC 1 cut(s) 110
DdeI CTNAG 1 cut(s) 77
DpnI GATC 1 cut(s) 99
DpnII GATC 1 cut(s) 97
Eco130I CCWWGG 1 cut(s) 9
EcoT14I CCWWGG 1 cut(s) 9
ErhI CCWWGG 1 cut(s) 9
FaeI CATG 1 cut(s) 13
FaiI YATR 1 cut(s) 11
FatI CATG 1 cut(s) 9
FokI GGATG 1 cut(s) 26
FspEI CC 8 cut(s) 2, 3, 20, 20, 21, 22, 66, 79
Hin1II CATG 1 cut(s) 13
HinfI GANTC 1 cut(s) 38
Hpy188I TCNGA 2 cut(s) 78, 97
HpyCH4V TGCA 1 cut(s) 46
HpyF3I CTNAG 1 cut(s) 77
Hsp92II CATG 1 cut(s) 13
Kzo9I GATC 1 cut(s) 97
MalI GATC 1 cut(s) 99
MboI GATC 1 cut(s) 97
MflI RGATCY 1 cut(s) 97
MnlI CCTC 2 cut(s) 10, 74
MseI TTAA 2 cut(s) 33, 114
MspCI CTTAAG 1 cut(s) 32
NcoI CCATGG 1 cut(s) 9
NdeII GATC 1 cut(s) 97
NlaIII CATG 1 cut(s) 13
PfeI GAWTC 1 cut(s) 38
PsuI RGATCY 1 cut(s) 97
RsaI GTAC 1 cut(s) 111
RsaNI GTAC 1 cut(s) 110
SaqAI TTAA 2 cut(s) 33, 114
Sau3AI GATC 1 cut(s) 97
ScaI AGTACT 1 cut(s) 111
SgeI CNNG 2 cut(s) 22, 119
SmlI CTYRAG 1 cut(s) 32
SmoI CTYRAG 1 cut(s) 32
StyI CCWWGG 1 cut(s) 9
TatI WGTACW 1 cut(s) 109
TfiI GAWTC 1 cut(s) 38
Tru1I TTAA 2 cut(s) 33, 114
Tru9I TTAA 2 cut(s) 33, 114
Vha464I CTTAAG 1 cut(s) 32
ZrmI AGTACT 1 cut(s) 111
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.