Rmu_sc0004645.1_g000005

Protein of unknown function (DUF674)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0004645.1
OG0000352
Physical Location & Seq
Reverse (-)
32186 .. 32563
378 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0004645.1_g000005.1.cds

Sequence Viewer

Length: 213 bp
atggatgatttggaggtgaaactaccgatgtccaccatctcaagtctagctctgctgaacaggttaaatgttaaggatgttggtgcacttgaagagaaggttgttaatcttggcatgcaagagggtgtgaaactgttgaagtcatctcttcagtccaagtcagttctgacgaatgtgttcattgggaagaaaactgctgcatcacctgcatga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF674

Protein Analysis

70

Amino Acids

7.47

Weight (kDa)

9.16

Isoelectric Point (pI)

37.73

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000352)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g24890 FvH4_7g21280 FvH4_7g21300 FvH4_7g21300 FvH4_7g21310 FvH4_7g21330 FvH4_7g21340 FvH4_7g21600 FvH4_7g21610 FvH4_7g21630
malus_domestica MD07G1190400.v1.1 MD07G1190600.v1.1
prunus_persica Prupe.2G228600_v2.0.a1 Prupe.6G198200_v2.0.a1
pyrus_communis pycom07g18010
rosa_chinensis RchiOBHm_Chr1g0365711 RchiOBHm_Chr1g0365721 RchiOBHm_Chr1g0365731 RchiOBHm_Chr1g0365991 RchiOBHm_Chr5g0044511 RchiOBHm_Chr6g0247041 RchiOBHm_Chr6g0247081
rosa_laevigata RLG00000015223 RLG00000027405 RLG00000027406 RLG00000027407 RLG00000027408 RLG00000027409 RLG00000027411 RLG00000027413 RLG00000034277
rosa_multiflora Rmu_co8279495.1_g000001 Rmu_co8358963.1_g000001 Rmu_co8520123.1_g000003 Rmu_sc0002093.1_g000019 Rmu_sc0002093.1_g000024 Rmu_sc0002093.1_g000025 Rmu_sc0002093.1_g000029 Rmu_sc0002476.1_g000002 Rmu_sc0002476.1_g000021 Rmu_sc0003466.1_g000011 Rmu_sc0004288.1_g000006 Rmu_sc0004288.1_g000007 Rmu_sc0004311.1_g000022 Rmu_sc0004311.1_g000023 Rmu_sc0004311.1_g000026 Rmu_sc0004311.1_g000033 Rmu_sc0004577.1_g000008 Rmu_sc0004645.1_g000005 Rmu_sc0004645.1_g000006 Rmu_sc0006406.1_g000011 Rmu_sc0006406.1_g000012 Rmu_sc0009967.1_g000002 Rmu_sc0011598.1_g000003 Rmu_ssc0000151.1_g000015
rosa_roxburghii Rroxscaffold_1G00036500 Rroxscaffold_3G00276050 Rroxscaffold_4G00290950 Rroxscaffold_4G00290960 Rroxscaffold_4G00290970 Rroxscaffold_4G00290980 Rroxscaffold_4G00291000 Rroxscaffold_4G00291030 Rroxscaffold_4G00291060
rosa_rugosa Rorug01G0322900 Rorug01G0323000 Rorug01G0323100 Rorug01G0323200 Rorug01G0323300 Rorug01G0323400 Rorug01G0323500 Rorug01G0323600 Rorug05G0214700 Rorug05G0522100
rosa_samantha Rh1AG332000 Rh1AG332200 Rh1AG332300 Rh1AG334700 Rh1AG334800 Rh1AG335200 Rh1CG309900 Rh1CG310000 Rh1CG310100 Rh1DG325100 Rh1DG325300 Rh1DG325500 Rh5AG299000 Rh5BG306500 Rh5DG315800 Rh6AG037200 Rh6BG031900 Rh6BG032000 Rh6CG032300 Rh6CG032400 Rh6CG033200 Rh6DG030900
rosa_wichuraiana Rw0G001530 Rw1G019070 Rw1G029470 Rw1G029480 Rw1G029490 Rw1G029500 Rw1G029510 Rw1G029700 Rw5G027640 Rw5G027670 Rw6G003160 Rw6G003190

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcuI CTGAAG 1 cut(s) 134
AgsI TTSAA 2 cut(s) 92, 139
AluBI AGCT 1 cut(s) 50
AluI AGCT 1 cut(s) 50
Alw21I GWGCWC 1 cut(s) 88
Alw44I GTGCAC 1 cut(s) 84
ApaLI GTGCAC 1 cut(s) 84
ApeKI GCWGC 1 cut(s) 197
Asp700I GAANNNNTTC 1 cut(s) 176
AsuHPI GGTGA 2 cut(s) 28, 195
BaeGI GKGCMC 1 cut(s) 88
Bbv12I GWGCWC 1 cut(s) 88
BbvI GCAGC 1 cut(s) 184
BccI CCATC 1 cut(s) 44
BfaI CTAG 1 cut(s) 47
BisI GCNGC 1 cut(s) 198
BlsI GCNGC 1 cut(s) 199
BmsI GCATC 1 cut(s) 209
BpuEI CTTGAG 1 cut(s) 25
BseGI GGATG 2 cut(s) 10, 82
BseSI GKGCMC 1 cut(s) 88
BseXI GCAGC 1 cut(s) 184
BsiHKAI GWGCWC 1 cut(s) 88
Bsp1286I GDGCHC 1 cut(s) 88
Bst4CI ACNGT 1 cut(s) 135
Bst6I CTCTTC 2 cut(s) 87, 153
BstAPI GCANNNNNTGC 1 cut(s) 206
BstC8I GCNNGC 1 cut(s) 116
BstF5I GGATG 2 cut(s) 10, 82
BstMWI GCNNNNNNNGC 1 cut(s) 206
BstNSI RCATGY 1 cut(s) 118
BstSLI GKGCMC 1 cut(s) 88
BstV1I GCAGC 1 cut(s) 184
BtsCI GGATG 2 cut(s) 10, 82
Cac8I GCNNGC 1 cut(s) 116
CviAII CATG 2 cut(s) 115, 210
CviJI RGCY 1 cut(s) 50
CviKI_1 RGCY 1 cut(s) 50
Eam1104I CTCTTC 2 cut(s) 87, 153
EarI CTCTTC 2 cut(s) 87, 153
Eco57I CTGAAG 1 cut(s) 134
FaeI CATG 2 cut(s) 118, 213
FaiI YATR 2 cut(s) 116, 211
FatI CATG 2 cut(s) 114, 209
Fnu4HI GCNGC 1 cut(s) 198
FokI GGATG 2 cut(s) 17, 89
Fsp4HI GCNGC 1 cut(s) 198
FspBI CTAG 1 cut(s) 47
GluI GCNGC 1 cut(s) 198
Hin1II CATG 2 cut(s) 118, 213
HphI GGTGA 2 cut(s) 28, 195
Hpy166II GTNNAC 2 cut(s) 33, 86
Hpy188I TCNGA 1 cut(s) 168
Hpy8I GTNNAC 2 cut(s) 33, 86
HpyAV CCTTC 1 cut(s) 91
HpyCH4III ACNGT 1 cut(s) 135
HpyCH4V TGCA 4 cut(s) 86, 118, 200, 209
HpyF10VI GCNNNNNNNGC 1 cut(s) 206
Hsp92II CATG 2 cut(s) 118, 213
LpnPI CCDG 1 cut(s) 46
Lsp1109I GCAGC 1 cut(s) 184
LweI GCATC 1 cut(s) 209
MaeI CTAG 1 cut(s) 47
MboII GAAGA 3 cut(s) 104, 140, 199
MhlI GDGCHC 1 cut(s) 88
MnlI CCTC 2 cut(s) 7, 115
MroXI GAANNNNTTC 1 cut(s) 176
MseI TTAA 3 cut(s) 65, 72, 105
MslI CAYNNNNRTG 1 cut(s) 208
MwoI GCNNNNNNNGC 1 cut(s) 206
NlaIII CATG 2 cut(s) 118, 213
NspI RCATGY 1 cut(s) 118
PaeI GCATGC 1 cut(s) 118
PdmI GAANNNNTTC 1 cut(s) 176
PkrI GCNGC 1 cut(s) 199
RseI CAYNNNNRTG 1 cut(s) 208
SaqAI TTAA 3 cut(s) 65, 72, 105
SatI GCNGC 1 cut(s) 198
SduI GDGCHC 1 cut(s) 88
SetI ASST 5 cut(s) 18, 52, 65, 102, 208
SfaNI GCATC 1 cut(s) 209
SgeI CNNG 8 cut(s) 54, 59, 73, 101, 122, 127, 131, 169
SmiMI CAYNNNNRTG 1 cut(s) 208
SmlI CTYRAG 1 cut(s) 40
SmoI CTYRAG 1 cut(s) 40
SphI GCATGC 1 cut(s) 118
SspMI CTAG 1 cut(s) 47
TaaI ACNGT 1 cut(s) 135
Tru1I TTAA 3 cut(s) 65, 72, 105
Tru9I TTAA 3 cut(s) 65, 72, 105
TseI GCWGC 1 cut(s) 197
TspDTI ATGAA 1 cut(s) 169
VneI GTGCAC 1 cut(s) 84
XceI RCATGY 1 cut(s) 118
XmnI GAANNNNTTC 1 cut(s) 176
XspI CTAG 1 cut(s) 47
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.