Rw1G029500

Protein of unknown function (DUF674)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr1
OG0000352
Physical Location & Seq
Reverse (-)
57224493 .. 57225945
1453 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw1G029500.1

Sequence Viewer

Length: 756 bp
ATGGCAACTATTAGCTTGAAGCTACTCGTTGACACAAAGCAGAAAAAAGTTCTGTTCGCCGAAGCTGGTAAGGAATTTGTTGACTTCCTCTTCACCCTTCTTTCTTTTCCCGCCGGTTCTATCATCAGGCTCCTCTCAAAGGACATGGTTGGAAGCCTAGGTAGACTGTACGAAAGCGTTGAAAATTTTAGTGATACATATATGCAACCCAATCTGAACAAAGACATCCTCCTGAAACCTAAAGAACCTGGTACCGTGCCTAACAATCTAGGGTTGTTAACCAATGTCGAAAAAACTGAAAGGAAGTCGACTTACATTTGTTCCAATACGGGAAACGTAGTTTGGCGTGGCAGCTACAGTGGCTATAGCGATATCCACCCGTATTGTTCTGATGATCCTAAAGCCAAATGTCCAAAGTGCAGTCACAACATGAGTATTTCAACGACTTATGTTGCTCCACCGACTGCTCCTGCGGAAGAAGCTTCCGCCGCCTCTAAAAGGATAGGGTTTGTCAAACCGGTTGTTACATACATGATAATGGATGACTTGGAAGTGAAGCCTATGTCTACCATCTCGACCATTGCTCTGCTCAACAGCCTCAATGTTAGAGATTTTGGTGCCCTTGAAGAGAAGGTTGTTAATCTAGGCATGGATGAGGGTGTGAAATTGCTCAAGGAATCATTGCAATCAAAGTCAGTTCTTACTAATGTGTTTCTTGGAGGAGTGAAGCATGAAGATCACAGCTCTGCAAATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF674

Protein Analysis

251

Amino Acids

27.51

Weight (kDa)

6.9

Isoelectric Point (pI)

28.34

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF674 PF05056 3 - 243 3.3e-46 Protein of unknown function (DUF674)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000352)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g24890 FvH4_7g21280 FvH4_7g21300 FvH4_7g21300 FvH4_7g21310 FvH4_7g21330 FvH4_7g21340 FvH4_7g21600 FvH4_7g21610 FvH4_7g21630
malus_domestica MD07G1190400.v1.1 MD07G1190600.v1.1
prunus_persica Prupe.2G228600_v2.0.a1 Prupe.6G198200_v2.0.a1
pyrus_communis pycom07g18010
rosa_chinensis RchiOBHm_Chr1g0365711 RchiOBHm_Chr1g0365721 RchiOBHm_Chr1g0365731 RchiOBHm_Chr1g0365991 RchiOBHm_Chr5g0044511 RchiOBHm_Chr6g0247041 RchiOBHm_Chr6g0247081
rosa_laevigata RLG00000015223 RLG00000027405 RLG00000027406 RLG00000027407 RLG00000027408 RLG00000027409 RLG00000027411 RLG00000027413 RLG00000034277
rosa_multiflora Rmu_co8279495.1_g000001 Rmu_co8358963.1_g000001 Rmu_co8520123.1_g000003 Rmu_sc0002093.1_g000019 Rmu_sc0002093.1_g000024 Rmu_sc0002093.1_g000025 Rmu_sc0002093.1_g000029 Rmu_sc0002476.1_g000002 Rmu_sc0002476.1_g000021 Rmu_sc0003466.1_g000011 Rmu_sc0004288.1_g000006 Rmu_sc0004288.1_g000007 Rmu_sc0004311.1_g000022 Rmu_sc0004311.1_g000023 Rmu_sc0004311.1_g000026 Rmu_sc0004311.1_g000033 Rmu_sc0004577.1_g000008 Rmu_sc0004645.1_g000005 Rmu_sc0004645.1_g000006 Rmu_sc0006406.1_g000011 Rmu_sc0006406.1_g000012 Rmu_sc0009967.1_g000002 Rmu_sc0011598.1_g000003 Rmu_ssc0000151.1_g000015
rosa_roxburghii Rroxscaffold_1G00036500 Rroxscaffold_3G00276050 Rroxscaffold_4G00290950 Rroxscaffold_4G00290960 Rroxscaffold_4G00290970 Rroxscaffold_4G00290980 Rroxscaffold_4G00291000 Rroxscaffold_4G00291030 Rroxscaffold_4G00291060
rosa_rugosa Rorug01G0322900 Rorug01G0323000 Rorug01G0323100 Rorug01G0323200 Rorug01G0323300 Rorug01G0323400 Rorug01G0323500 Rorug01G0323600 Rorug05G0214700 Rorug05G0522100
rosa_samantha Rh1AG332000 Rh1AG332200 Rh1AG332300 Rh1AG334700 Rh1AG334800 Rh1AG335200 Rh1CG309900 Rh1CG310000 Rh1CG310100 Rh1DG325100 Rh1DG325300 Rh1DG325500 Rh5AG299000 Rh5BG306500 Rh5DG315800 Rh6AG037200 Rh6BG031900 Rh6BG032000 Rh6CG032300 Rh6CG032400 Rh6CG033200 Rh6DG030900
rosa_wichuraiana Rw0G001530 Rw1G019070 Rw1G029470 Rw1G029480 Rw1G029490 Rw1G029500 Rw1G029510 Rw1G029700 Rw5G027640 Rw5G027670 Rw6G003160 Rw6G003190

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 251
AccB1I GGYRCC 2 cut(s) 251, 617
AccI GTMKAC 3 cut(s) 163, 308, 566
AciI CCGC 4 cut(s) 111, 473, 486, 489
AclWI GGATC 1 cut(s) 389
AcsI RAATTY 2 cut(s) 74, 184
AfaI GTAC 2 cut(s) 170, 253
AfiI CCNNNNNNNGG 2 cut(s) 139, 498
AgeI ACCGGT 1 cut(s) 517
AgsI TTSAA 4 cut(s) 19, 182, 441, 626
AjnI CCWGG 1 cut(s) 247
AjuI GAANNNNNNNTTGG 2 cut(s) 325, 357
AluBI AGCT 6 cut(s) 15, 22, 65, 354, 482, 744
AluI AGCT 6 cut(s) 15, 22, 65, 354, 482, 744
AlwI GGATC 1 cut(s) 389
ApeKI GCWGC 1 cut(s) 351
ApoI RAATTY 2 cut(s) 74, 184
AsiGI ACCGGT 1 cut(s) 517
Asp718I GGTACC 1 cut(s) 251
AspA2I CCTAGG 1 cut(s) 157
AsuHPI GGTGA 1 cut(s) 85
AvrII CCTAGG 1 cut(s) 157
BaeGI GKGCMC 1 cut(s) 622
BanI GGYRCC 2 cut(s) 251, 617
BarI GAAGNNNNNNTAC 2 cut(s) 296, 328
BbvI GCAGC 1 cut(s) 363
BccI CCATC 1 cut(s) 578
BciT130I CCWGG 1 cut(s) 249
BfaI CTAG 3 cut(s) 158, 269, 644
BfmI CTRYAG 2 cut(s) 355, 364
BisI GCNGC 2 cut(s) 352, 489
BlnI CCTAGG 1 cut(s) 157
BlsI GCNGC 2 cut(s) 353, 490
Bme1390I CCNGG 1 cut(s) 249
BmiI GGNNCC 3 cut(s) 131, 253, 619
BmrFI CCNGG 1 cut(s) 249
BpuEI CTTGAG 1 cut(s) 656
BsaJI CCNNGG 1 cut(s) 157
BsaWI WCCGGW 1 cut(s) 517
Bsc4I CCNNNNNNNGG 2 cut(s) 139, 498
Bse118I RCCGGY 2 cut(s) 113, 517
Bse3DI GCAATG 2 cut(s) 579, 680
BseBI CCWGG 1 cut(s) 249
BseDI CCNNGG 1 cut(s) 157
BseGI GGATG 3 cut(s) 225, 547, 658
BseLI CCNNNNNNNGG 2 cut(s) 139, 498
BseMI GCAATG 2 cut(s) 579, 680
BseRI GAGGAG 2 cut(s) 122, 735
BseSI GKGCMC 1 cut(s) 622
BseXI GCAGC 1 cut(s) 363
BsgI GTGCAG 1 cut(s) 439
BshNI GGYRCC 2 cut(s) 251, 617
BshTI ACCGGT 1 cut(s) 517
BsiSI CCGG 2 cut(s) 114, 518
BslI CCNNNNNNNGG 2 cut(s) 139, 498
Bsp1286I GDGCHC 1 cut(s) 622
Bsp143I GATC 2 cut(s) 394, 736
BspACI CCGC 4 cut(s) 111, 473, 486, 489
BspLI GGNNCC 3 cut(s) 131, 253, 619
BspPI GGATC 1 cut(s) 389
BspT107I GGYRCC 2 cut(s) 251, 617
BsrDI GCAATG 2 cut(s) 579, 680
BsrFI RCCGGY 2 cut(s) 113, 517
BssAI RCCGGY 2 cut(s) 113, 517
BssECI CCNNGG 1 cut(s) 157
BssMI GATC 2 cut(s) 394, 736
BssT1I CCWWGG 1 cut(s) 157
Bst2UI CCWGG 1 cut(s) 249
Bst4CI ACNGT 3 cut(s) 168, 256, 359
Bst6I CTCTTC 2 cut(s) 95, 621
BstENI CCTNNNNNAGG 2 cut(s) 137, 496
BstF5I GGATG 3 cut(s) 225, 547, 658
BstKTI GATC 2 cut(s) 397, 739
BstMBI GATC 2 cut(s) 394, 736
BstMWI GCNNNNNNNGC 3 cut(s) 360, 479, 488
BstNI CCWGG 1 cut(s) 249
BstSCI CCNGG 1 cut(s) 247
BstSFI CTRYAG 2 cut(s) 355, 364
BstSLI GKGCMC 1 cut(s) 622
BstV1I GCAGC 1 cut(s) 363
BtsCI GGATG 3 cut(s) 225, 547, 658
BtsIMutI CAGTG 1 cut(s) 364
Cfr10I RCCGGY 2 cut(s) 113, 517
CsiI ACCWGGT 1 cut(s) 247
Csp6I GTAC 2 cut(s) 169, 252
CspAI ACCGGT 1 cut(s) 517
CspCI CAANNNNNGTGG 2 cut(s) 365, 400
CviAII CATG 5 cut(s) 145, 430, 532, 649, 731
CviQI GTAC 2 cut(s) 169, 252
DpnI GATC 2 cut(s) 396, 738
DpnII GATC 2 cut(s) 394, 736
Eam1104I CTCTTC 2 cut(s) 95, 621
EarI CTCTTC 2 cut(s) 95, 621
EciI GGCGGA 1 cut(s) 475
Eco130I CCWWGG 1 cut(s) 157
Eco32I GATATC 1 cut(s) 373
EcoNI CCTNNNNNAGG 2 cut(s) 137, 496
EcoRII CCWGG 1 cut(s) 247
EcoRV GATATC 1 cut(s) 373
EcoT14I CCWWGG 1 cut(s) 157
ErhI CCWWGG 1 cut(s) 157
FaeI CATG 5 cut(s) 148, 433, 535, 652, 734
FatI CATG 5 cut(s) 144, 429, 531, 648, 730
FauI CCCGC 1 cut(s) 118
FblI GTMKAC 3 cut(s) 163, 308, 566
Fnu4HI GCNGC 2 cut(s) 352, 489
FokI GGATG 3 cut(s) 212, 554, 665
Fsp4HI GCNGC 2 cut(s) 352, 489
FspBI CTAG 3 cut(s) 158, 269, 644
GluI GCNGC 2 cut(s) 352, 489
HapII CCGG 2 cut(s) 114, 518
Hin1II CATG 5 cut(s) 148, 433, 535, 652, 734
HincII GTYRAC 4 cut(s) 31, 82, 279, 309
HindII GTYRAC 4 cut(s) 31, 82, 279, 309
HindIII AAGCTT 1 cut(s) 480
HinfI GANTC 1 cut(s) 677
HpaI GTTAAC 1 cut(s) 279
HpaII CCGG 2 cut(s) 114, 518
HphI GGTGA 1 cut(s) 85
Hpy166II GTNNAC 6 cut(s) 31, 82, 164, 279, 309, 567
Hpy188I TCNGA 2 cut(s) 216, 391
Hpy188III TCNNGA 2 cut(s) 232, 574
Hpy8I GTNNAC 6 cut(s) 31, 82, 164, 279, 309, 567
HpyAV CCTTC 2 cut(s) 107, 625
HpyCH4III ACNGT 3 cut(s) 168, 256, 359
HpyCH4IV ACGT 1 cut(s) 336
HpyCH4V TGCA 4 cut(s) 205, 420, 685, 749
HpyF10VI GCNNNNNNNGC 3 cut(s) 360, 479, 488
HpySE526I ACGT 1 cut(s) 336
Hsp92II CATG 5 cut(s) 148, 433, 535, 652, 734
KpnI GGTACC 1 cut(s) 255
KspAI GTTAAC 1 cut(s) 279
Kzo9I GATC 2 cut(s) 394, 736
LmnI GCTCC 3 cut(s) 135, 460, 472
LpnPI CCDG 8 cut(s) 51, 112, 127, 234, 245, 261, 483, 531
Lsp1109I GCAGC 1 cut(s) 363
MabI ACCWGGT 1 cut(s) 247
MaeI CTAG 3 cut(s) 158, 269, 644
MaeII ACGT 1 cut(s) 336
MaeIII GTNAC 2 cut(s) 422, 523
MalI GATC 2 cut(s) 396, 738
MboI GATC 2 cut(s) 394, 736
MboII GAAGA 4 cut(s) 82, 488, 638, 746
MhlI GDGCHC 1 cut(s) 622
MluCI AATT 4 cut(s) 74, 184, 665, 751
MmeI TCCRAC 1 cut(s) 130
MnlI CCTC 7 cut(s) 98, 143, 239, 502, 608, 649, 713
MseI TTAA 2 cut(s) 278, 639
MslI CAYNNNNRTG 1 cut(s) 536
MspI CCGG 2 cut(s) 114, 518
MspR9I CCNGG 1 cut(s) 249
MvaI CCWGG 1 cut(s) 249
MwoI GCNNNNNNNGC 3 cut(s) 360, 479, 488
NdeII GATC 2 cut(s) 394, 736
NlaIII CATG 5 cut(s) 148, 433, 535, 652, 734
NlaIV GGNNCC 3 cut(s) 131, 253, 619
NmuCI GTSAC 1 cut(s) 422
PfeI GAWTC 1 cut(s) 677
PinAI ACCGGT 1 cut(s) 517
PkrI GCNGC 2 cut(s) 353, 490
Psp6I CCWGG 1 cut(s) 247
PspGI CCWGG 1 cut(s) 247
PspN4I GGNNCC 3 cut(s) 131, 253, 619
RsaI GTAC 2 cut(s) 170, 253
RsaNI GTAC 2 cut(s) 169, 252
RseI CAYNNNNRTG 1 cut(s) 536
SalI GTCGAC 1 cut(s) 307
SaqAI TTAA 2 cut(s) 278, 639
SatI GCNGC 2 cut(s) 352, 489
Sau3AI GATC 2 cut(s) 394, 736
ScrFI CCNGG 1 cut(s) 249
SduI GDGCHC 1 cut(s) 622
SexAI ACCWGGT 1 cut(s) 247
SfcI CTRYAG 2 cut(s) 355, 364
SmiMI CAYNNNNRTG 1 cut(s) 536
SmlI CTYRAG 1 cut(s) 671
SmoI CTYRAG 1 cut(s) 671
Sse9I AATT 4 cut(s) 74, 184, 665, 751
SsiI CCGC 4 cut(s) 111, 473, 486, 489
SspMI CTAG 3 cut(s) 158, 269, 644
StyD4I CCNGG 1 cut(s) 247
StyI CCWWGG 1 cut(s) 157
TaaI ACNGT 3 cut(s) 168, 256, 359
TaiI ACGT 1 cut(s) 339
TaqI TCGA 3 cut(s) 288, 308, 575
TasI AATT 4 cut(s) 74, 184, 665, 751
TauI GCSGC 1 cut(s) 491
TfiI GAWTC 1 cut(s) 677
Tru1I TTAA 2 cut(s) 278, 639
Tru9I TTAA 2 cut(s) 278, 639
TscAI CASTG 1 cut(s) 364
TseFI GTSAC 1 cut(s) 422
TseI GCWGC 1 cut(s) 351
Tsp45I GTSAC 1 cut(s) 422
TspDTI ATGAA 1 cut(s) 747
TspRI CASTG 1 cut(s) 364
XagI CCTNNNNNAGG 2 cut(s) 137, 496
XapI RAATTY 2 cut(s) 74, 184
XmaJI CCTAGG 1 cut(s) 157
XmiI GTMKAC 3 cut(s) 163, 308, 566
XspI CTAG 3 cut(s) 158, 269, 644
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.