pycom15g36300

Protein NRT1 PTR FAMILY 5.10-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr15
OG0000191
Physical Location & Seq
Reverse (-)
36325010 .. 36325494
485 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 360 bp
ATGGCAACTTCTCCCCGCCAATCCCCGGACCGGGACACCCAAACCCCACTGCTAGACGACGGCGTCGAGGGCGCCGTTGACCACAAAGGCCGCCCCGTTCACAGATACAGATCAGGCGGCTGGCGTTCCGCTCGGTTCATAATCGGGGTGGAGGTGGCGGAGAGGTTTGCCTACTATGGAATCAGCTCCAACCTTATCACGTTTCTGACGGGCCCTTTGGGGCAGTCCACCGTCACAGCGGCTGAGAATGTCAACATATGGGCCGGAACGGCGTCGTTGCTCCCTTTACTCGGAGCCTTTGTCGCTGATTCTTTTCTTGGACGGTACGTGCCTCTCTCTCTCTACAATTTTGGCACGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PTR2

Protein Analysis

120

Amino Acids

12.88

Weight (kDa)

6.72

Isoelectric Point (pI)

36.86

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000191)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G22540
fragaria_vesca FvH4_5g31770 FvH4_5g31770 FvH4_5g31790 FvH4_5g31790 FvH4_5g31800 FvH4_5g31800 FvH4_5g31800 FvH4_5g31830 FvH4_5g31840 FvH4_5g31840 FvH4_6g12331
malus_domestica MD02G1288000.v1.1 MD02G1288200.v1.1 MD03G1076700.v1.1 MD07G1122800.v1.1 MD08G1218300.v1.1 MD15G1406500.v1.1 MD15G1406600.v1.1 MD15G1406700.v1.1
prunus_persica Prupe.7G017300_v2.0.a1 Prupe.7G017300_v2.0.a1 Prupe.7G017300_v2.0.a1 Prupe.7G017300_v2.0.a1 Prupe.7G017300_v2.0.a1 Prupe.7G017300_v2.0.a1 Prupe.7G017300_v2.0.a1
pyrus_communis pycom05g17900 pycom08g18920 pycom15g36290 pycom15g36300 pycom15g36310
rosa_chinensis RchiOBHm_Chr3g0482421 RchiOBHm_Chr4g0413471 RchiOBHm_Chr7g0227651 RchiOBHm_Chr7g0227661 RchiOBHm_Chr7g0227671 RchiOBHm_Chr7g0227681 RchiOBHm_Chr7g0227701 RchiOBHm_Chr7g0227711 RchiOBHm_Chr7g0227721 RchiOBHm_Chr7g0227731 RchiOBHm_Chr7g0227741 RchiOBHm_Chr7g0227761 RchiOBHm_Chr7g0227781 RchiOBHm_Chr7g0227791 RchiOBHm_Chr7g0227801 RchiOBHm_Chr7g0227861 RchiOBHm_Chr7g0227881
rosa_laevigata RLG00000001610 RLG00000001611 RLG00000001613 RLG00000001617 RLG00000001618 RLG00000001619 RLG00000001622 RLG00000001623 RLG00000001625 RLG00000001627 RLG00000001628 RLG00000001629 RLG00000001630 RLG00000008217
rosa_multiflora Rmu_co8446845.1_g000001 Rmu_co8488273.1_g000001 Rmu_sc0000347.1_g000023 Rmu_sc0000347.1_g000032 Rmu_sc0000347.1_g000038 Rmu_sc0000347.1_g000046 Rmu_sc0000347.1_g000047 Rmu_sc0000347.1_g000049 Rmu_sc0000347.1_g000050 Rmu_sc0000883.1_g000014 Rmu_sc0000883.1_g000015 Rmu_sc0001930.1_g000001 Rmu_sc0001930.1_g000006 Rmu_sc0005026.1_g000009 Rmu_sc0005026.1_g000013 Rmu_sc0005026.1_g000018 Rmu_sc0005026.1_g000021 Rmu_sc0005743.1_g000008 Rmu_sc0005743.1_g000010 Rmu_sc0010635.1_g000001 Rmu_sc0013384.1_g000001 Rmu_sc0013521.1_g000001 Rmu_sc0014985.1_g000003 Rmu_sc0022490.1_g000001 Rmu_sc0025092.1_g000001 Rmu_sc0036408.1_g000001
rosa_roxburghii Rroxscaffold_3G00231820 Rroxscaffold_3G00231860 Rroxscaffold_3G00231890 Rroxscaffold_3G00231910 Rroxscaffold_3G00231930 Rroxscaffold_3G00231940 Rroxscaffold_3G00231960 Rroxscaffold_3G00231970 Rroxscaffold_3G00231980 Rroxscaffold_5G00357370
rosa_rugosa Rorug03G0196300 Rorug04G0120600 Rorug07G0242700 Rorug07G0242800 Rorug07G0242900 Rorug07G0243000 Rorug07G0243100 Rorug07G0243200 Rorug07G0243400 Rorug07G0243600 Rorug07G0243800 Rorug07G0243900
rosa_samantha Rh3AG109500 Rh3AG248000 Rh3BG283000 Rh3CG114700 Rh3CG279600 Rh3DG275400 Rh3DG275500 Rh3DG275800 Rh4AG180200 Rh4BG179400 Rh4DG175400 Rh6AG297600 Rh6CG311000 Rh7AG396200 Rh7AG396300 Rh7AG396400 Rh7AG396600 Rh7AG397000 Rh7AG397100 Rh7BG377800 Rh7BG377900 Rh7BG378000 Rh7BG378100 Rh7BG378300 Rh7BG378400 Rh7BG378500 Rh7BG378800 Rh7BG378900 Rh7DG391900 Rh7DG392000 Rh7DG392300 Rh7DG392400 Rh7DG392700
rosa_wichuraiana Rw3G022320 Rw4G015000 Rw4G015060 Rw7G032940 Rw7G032950 Rw7G032960 Rw7G032970 Rw7G032980 Rw7G032990 Rw7G033000 Rw7G033010 Rw7G033020 Rw7G033030 Rw7G033050

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 62
AccB1I GGYRCC 1 cut(s) 71
AccBSI CCGCTC 1 cut(s) 131
AciI CCGC 6 cut(s) 16, 91, 117, 129, 158, 239
AcvI CACGTG 1 cut(s) 357
AcyI GRCGYC 3 cut(s) 63, 72, 272
AfaI GTAC 1 cut(s) 326
AfiI CCNNNNNNNGG 4 cut(s) 25, 30, 31, 290
AluBI AGCT 1 cut(s) 186
AluI AGCT 1 cut(s) 186
AlwNI CAGNNNCTG 1 cut(s) 242
AoxI GGCC 3 cut(s) 88, 211, 261
ApaI GGGCCC 1 cut(s) 215
ArsI GACNNNNNNTTYG 2 cut(s) 199, 231
AspLEI GCGC 1 cut(s) 74
AspS9I GGNCC 4 cut(s) 28, 211, 212, 261
AsuC2I CCSGG 2 cut(s) 26, 32
AvaII GGWCC 1 cut(s) 28
BaeGI GKGCMC 1 cut(s) 215
BanI GGYRCC 1 cut(s) 71
BanII GRGCYC 1 cut(s) 215
BbrPI CACGTG 1 cut(s) 357
BceAI ACGGC 3 cut(s) 59, 76, 285
BcnI CCSGG 2 cut(s) 26, 32
BfaI CTAG 1 cut(s) 53
BfoI RGCGCY 1 cut(s) 75
BglI GCCNNNNNGGC 1 cut(s) 269
BisI GCNGC 3 cut(s) 91, 118, 240
BlsI GCNGC 3 cut(s) 92, 119, 241
Bme1390I CCNGG 2 cut(s) 26, 32
Bme18I GGWCC 1 cut(s) 28
BmgT120I GGNCC 4 cut(s) 28, 211, 212, 261
BmiI GGNNCC 3 cut(s) 73, 213, 295
BmrFI CCNGG 2 cut(s) 26, 32
BpuMI CCSGG 2 cut(s) 26, 32
BsaAI YACGTR 2 cut(s) 328, 357
BsaBI GATNNNNATC 1 cut(s) 109
BsaHI GRCGYC 3 cut(s) 63, 72, 272
BsaJI CCNNGG 1 cut(s) 24
BsaXI ACNNNNNCTCC 2 cut(s) 285, 315
Bsc4I CCNNNNNNNGG 4 cut(s) 25, 30, 31, 290
Bse8I GATNNNNATC 1 cut(s) 109
BseDI CCNNGG 1 cut(s) 24
BseJI GATNNNNATC 1 cut(s) 109
BseLI CCNNNNNNNGG 4 cut(s) 25, 30, 31, 290
BseMII CTCAG 1 cut(s) 234
BseSI GKGCMC 1 cut(s) 215
BshFI GGCC 3 cut(s) 90, 213, 263
BshNI GGYRCC 1 cut(s) 71
BsiSI CCGG 3 cut(s) 26, 31, 264
BslFI GGGAC 1 cut(s) 47
BslI CCNNNNNNNGG 4 cut(s) 25, 30, 31, 290
BsmFI GGGAC 1 cut(s) 47
BsnI GGCC 3 cut(s) 90, 213, 263
Bsp120I GGGCCC 1 cut(s) 211
Bsp1286I GDGCHC 1 cut(s) 215
Bsp143I GATC 1 cut(s) 110
BspACI CCGC 6 cut(s) 16, 91, 117, 129, 158, 239
BspANI GGCC 3 cut(s) 90, 213, 263
BspCNI CTCAG 1 cut(s) 235
BspLI GGNNCC 3 cut(s) 73, 213, 295
BspT107I GGYRCC 1 cut(s) 71
BsrBI CCGCTC 1 cut(s) 131
BssECI CCNNGG 1 cut(s) 24
BssMI GATC 1 cut(s) 110
BssNI GRCGYC 3 cut(s) 63, 72, 272
Bst4CI ACNGT 2 cut(s) 232, 324
BstACI GRCGYC 3 cut(s) 63, 72, 272
BstBAI YACGTR 2 cut(s) 328, 357
BstC8I GCNNGC 1 cut(s) 122
BstDEI CTNAG 1 cut(s) 243
BstH2I RGCGCY 1 cut(s) 75
BstHHI GCGC 1 cut(s) 74
BstKTI GATC 1 cut(s) 113
BstMBI GATC 1 cut(s) 110
BstMWI GCNNNNNNNGC 3 cut(s) 69, 269, 302
BstSCI CCNGG 2 cut(s) 24, 30
BstSLI GKGCMC 1 cut(s) 215
BsuRI GGCC 3 cut(s) 90, 213, 263
BtsI GCAGTG 1 cut(s) 47
BtsIMutI CAGTG 1 cut(s) 47
Cac8I GCNNGC 1 cut(s) 122
CaiI CAGNNNCTG 1 cut(s) 242
CfoI GCGC 1 cut(s) 74
Cfr13I GGNCC 4 cut(s) 28, 211, 212, 261
CpoI CGGWCCG 1 cut(s) 28
CseI GACGC 2 cut(s) 52, 261
Csp6I GTAC 1 cut(s) 325
CspI CGGWCCG 1 cut(s) 28
CviJI RGCY 7 cut(s) 90, 120, 186, 213, 242, 263, 296
CviKI_1 RGCY 7 cut(s) 90, 120, 186, 213, 242, 263, 296
CviQI GTAC 1 cut(s) 325
DdeI CTNAG 1 cut(s) 243
DinI GGCGCC 1 cut(s) 73
DpnI GATC 1 cut(s) 112
DpnII GATC 1 cut(s) 110
DrdI GACNNNNNNGTC 1 cut(s) 62
DseDI GACNNNNNNGTC 1 cut(s) 62
EciI GGCGGA 1 cut(s) 173
Eco24I GRGCYC 1 cut(s) 215
Eco47I GGWCC 1 cut(s) 28
Eco72I CACGTG 1 cut(s) 357
EcoO109I RGGNCCY 1 cut(s) 212
EcoT38I GRGCYC 1 cut(s) 215
EgeI GGCGCC 1 cut(s) 73
EheI GGCGCC 1 cut(s) 73
FaiI YATR 4 cut(s) 140, 177, 257, 259
FaqI GGGAC 1 cut(s) 47
FauI CCCGC 1 cut(s) 23
FauNDI CATATG 1 cut(s) 257
Fnu4HI GCNGC 3 cut(s) 91, 118, 240
FriOI GRGCYC 1 cut(s) 215
Fsp4HI GCNGC 3 cut(s) 91, 118, 240
FspBI CTAG 1 cut(s) 53
GlaI GCGC 1 cut(s) 73
GluI GCNGC 3 cut(s) 91, 118, 240
HaeII RGCGCY 1 cut(s) 75
HaeIII GGCC 3 cut(s) 90, 213, 263
HapII CCGG 3 cut(s) 26, 31, 264
HgaI GACGC 2 cut(s) 52, 261
HhaI GCGC 1 cut(s) 74
Hin1I GRCGYC 3 cut(s) 63, 72, 272
Hin6I GCGC 1 cut(s) 72
HinP1I GCGC 1 cut(s) 72
HincII GTYRAC 2 cut(s) 79, 253
HindII GTYRAC 2 cut(s) 79, 253
HinfI GANTC 2 cut(s) 180, 308
HpaII CCGG 3 cut(s) 26, 31, 264
Hpy166II GTNNAC 4 cut(s) 79, 100, 228, 253
Hpy188I TCNGA 2 cut(s) 207, 293
Hpy8I GTNNAC 4 cut(s) 79, 100, 228, 253
Hpy99I CGWCG 3 cut(s) 62, 68, 277
HpyCH4III ACNGT 2 cut(s) 232, 324
HpyCH4IV ACGT 3 cut(s) 200, 327, 356
HpyF10VI GCNNNNNNNGC 3 cut(s) 69, 269, 302
HpyF3I CTNAG 1 cut(s) 243
HpySE526I ACGT 3 cut(s) 200, 327, 356
Hsp92I GRCGYC 3 cut(s) 63, 72, 272
HspAI GCGC 1 cut(s) 72
KasI GGCGCC 1 cut(s) 71
Kzo9I GATC 1 cut(s) 110
LmnI GCTCC 3 cut(s) 191, 285, 293
LpnPI CCDG 5 cut(s) 39, 44, 99, 106, 277
MaeI CTAG 1 cut(s) 53
MaeII ACGT 3 cut(s) 200, 327, 356
MaeIII GTNAC 1 cut(s) 232
MalI GATC 1 cut(s) 112
MbiI CCGCTC 1 cut(s) 131
MboI GATC 1 cut(s) 110
MhlI GDGCHC 1 cut(s) 215
MluCI AATT 1 cut(s) 346
Mly113I GGCGCC 1 cut(s) 72
MmeI TCCRAC 1 cut(s) 213
MnlI CCTC 4 cut(s) 61, 145, 156, 342
MspA1I CMGCKG 1 cut(s) 239
MspI CCGG 3 cut(s) 26, 31, 264
MspR9I CCNGG 2 cut(s) 26, 32
MwoI GCNNNNNNNGC 3 cut(s) 69, 269, 302
NarI GGCGCC 1 cut(s) 72
NciI CCSGG 2 cut(s) 26, 32
NdeI CATATG 1 cut(s) 257
NdeII GATC 1 cut(s) 110
NlaIV GGNNCC 3 cut(s) 73, 213, 295
NmuCI GTSAC 1 cut(s) 232
PcsI WCGNNNNNNNCGW 2 cut(s) 63, 72
PfeI GAWTC 2 cut(s) 180, 308
PflFI GACNNNGTC 1 cut(s) 62
PkrI GCNGC 3 cut(s) 92, 119, 241
PluTI GGCGCC 1 cut(s) 75
PmaCI CACGTG 1 cut(s) 357
PmlI CACGTG 1 cut(s) 357
Ppu21I YACGTR 2 cut(s) 328, 357
PspCI CACGTG 1 cut(s) 357
PspN4I GGNNCC 3 cut(s) 73, 213, 295
PspOMI GGGCCC 1 cut(s) 211
PspPI GGNCC 4 cut(s) 28, 211, 212, 261
PstNI CAGNNNCTG 1 cut(s) 242
PsyI GACNNNGTC 1 cut(s) 62
RsaI GTAC 1 cut(s) 326
RsaNI GTAC 1 cut(s) 325
Rsr2I CGGWCCG 1 cut(s) 28
RsrII CGGWCCG 1 cut(s) 28
SatI GCNGC 3 cut(s) 91, 118, 240
Sau3AI GATC 1 cut(s) 110
Sau96I GGNCC 4 cut(s) 28, 211, 212, 261
ScrFI CCNGG 2 cut(s) 26, 32
SduI GDGCHC 1 cut(s) 215
SetI ASST 7 cut(s) 156, 167, 188, 195, 203, 330, 359
SfoI GGCGCC 1 cut(s) 73
SinI GGWCC 1 cut(s) 28
Sse9I AATT 1 cut(s) 346
SsiI CCGC 6 cut(s) 16, 91, 117, 129, 158, 239
SspDI GGCGCC 1 cut(s) 71
SspMI CTAG 1 cut(s) 53
StyD4I CCNGG 2 cut(s) 24, 30
TaaI ACNGT 2 cut(s) 232, 324
TaiI ACGT 3 cut(s) 203, 330, 359
TaqI TCGA 1 cut(s) 66
TasI AATT 1 cut(s) 346
TauI GCSGC 3 cut(s) 93, 120, 242
TfiI GAWTC 2 cut(s) 180, 308
TscAI CASTG 1 cut(s) 54
TseFI GTSAC 1 cut(s) 232
Tsp45I GTSAC 1 cut(s) 232
TspDTI ATGAA 1 cut(s) 127
TspRI CASTG 1 cut(s) 54
Tth111I GACNNNGTC 1 cut(s) 62
VpaK11BI GGWCC 1 cut(s) 28
XspI CTAG 1 cut(s) 53
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.