pycom2246g00060

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
tig00002246
OG0000104
Physical Location & Seq
Forward (+)
6158 .. 6555
398 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom2246g00060.2

Sequence Viewer

Length: 306 bp
ATGAGAACTTTGAAGGGGTTAGTCGATCCTAAGAGACGGGGGAAGCCCGTCCGACAGCGCGTCCAGCGCGAACTTCGAAAGGGAATCGGGTTAAAATTCCTGAACCGGGACGCGGCGGTTGACGCTTTTCTGTTTAACAGCCTGCCCACCCTGGAAACGGCTCAGCCGGAGGTAGGGTCCAGCGGCTGGAAGAGCACCGCACGTCGCGCGGTGTCCGGTGCGCCCCCGGCGGCCCTTGAAAATCCGGAGGACCGAGTACCGTTCGCGCCCGGTCGTACTCATAACCGCATCAGGTCTCCAAGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

102

Amino Acids

11.22

Weight (kDa)

11.71

Isoelectric Point (pI)

51.16

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000104)

Species Orthologous Gene IDs
pyrus_communis pycom2246g00050 pycom2246g00060 pycom2246g00070 pycom2246g00100 pycom2246g00170 pycom2575g00020 pycom520g01350
rosa_roxburghii Rroxscaffold_102G00450880 Rroxscaffold_102G00450940 Rroxscaffold_103G00450570 Rroxscaffold_104G00444660 Rroxscaffold_104G00444710 Rroxscaffold_104G00444740 Rroxscaffold_104G00444800 Rroxscaffold_104G00444860 Rroxscaffold_105G00447090 Rroxscaffold_105G00447190 Rroxscaffold_105G00447230 Rroxscaffold_106G00451430 Rroxscaffold_107G00442440 Rroxscaffold_107G00442550 Rroxscaffold_107G00442640 Rroxscaffold_107G00442690 Rroxscaffold_111G00451560 Rroxscaffold_112G00451580 Rroxscaffold_113G00451620 Rroxscaffold_115G00451690 Rroxscaffold_118G00451780 Rroxscaffold_122G00451870 Rroxscaffold_123G00451910 Rroxscaffold_124G00451960 Rroxscaffold_128G00452050 Rroxscaffold_12G00450640 Rroxscaffold_131G00452100 Rroxscaffold_132G00452130 Rroxscaffold_138G00452190 Rroxscaffold_13G00448670 Rroxscaffold_14G00441890 Rroxscaffold_14G00441960 Rroxscaffold_14G00442010 Rroxscaffold_14G00442070 Rroxscaffold_15G00447460 Rroxscaffold_15G00447510 Rroxscaffold_15G00447580 Rroxscaffold_162G00450750 Rroxscaffold_17G00435460 Rroxscaffold_17G00435510 Rroxscaffold_17G00435570 Rroxscaffold_17G00435640 Rroxscaffold_17G00435910 Rroxscaffold_18G00446090 Rroxscaffold_18G00446110 Rroxscaffold_18G00446170 Rroxscaffold_19G00448930 Rroxscaffold_1G00000010 Rroxscaffold_1G00000090 Rroxscaffold_1G00000130 Rroxscaffold_20G00445030 Rroxscaffold_20G00445040 Rroxscaffold_20G00445070 Rroxscaffold_20G00445110 Rroxscaffold_21G00439440 Rroxscaffold_21G00439460 Rroxscaffold_21G00439470 Rroxscaffold_21G00439520 Rroxscaffold_21G00439570 Rroxscaffold_21G00439660 Rroxscaffold_22G00439850 Rroxscaffold_22G00439990 Rroxscaffold_22G00440030 Rroxscaffold_25G00450140 Rroxscaffold_25G00450170 Rroxscaffold_26G00447770 Rroxscaffold_27G00446650 Rroxscaffold_29G00441730 Rroxscaffold_29G00441740 Rroxscaffold_29G00441760 Rroxscaffold_29G00441780 Rroxscaffold_29G00441830 Rroxscaffold_29G00441870 Rroxscaffold_30G00449490 Rroxscaffold_30G00449510 Rroxscaffold_31G00438130 Rroxscaffold_31G00438170 Rroxscaffold_31G00438270 Rroxscaffold_32G00442790 Rroxscaffold_32G00442800 Rroxscaffold_32G00442840 Rroxscaffold_33G00439700 Rroxscaffold_33G00439710 Rroxscaffold_34G00443170 Rroxscaffold_34G00443210 Rroxscaffold_34G00443280 Rroxscaffold_34G00443310 Rroxscaffold_35G00441010 Rroxscaffold_35G00441120 Rroxscaffold_35G00441180 Rroxscaffold_35G00441260 Rroxscaffold_35G00441290 Rroxscaffold_36G00440070 Rroxscaffold_36G00440110 Rroxscaffold_36G00440140 Rroxscaffold_36G00440190 Rroxscaffold_37G00445180 Rroxscaffold_37G00445190 Rroxscaffold_37G00445230 Rroxscaffold_37G00445240 Rroxscaffold_37G00445270 Rroxscaffold_38G00444450 Rroxscaffold_38G00444530 Rroxscaffold_38G00444570 Rroxscaffold_38G00444600 Rroxscaffold_38G00444620 Rroxscaffold_39G00448260 Rroxscaffold_40G00447720 Rroxscaffold_43G00449810 Rroxscaffold_43G00449840 Rroxscaffold_43G00449900 Rroxscaffold_44G00440460 Rroxscaffold_44G00440470 Rroxscaffold_44G00440510 Rroxscaffold_44G00440600 Rroxscaffold_44G00440640 Rroxscaffold_45G00438810 Rroxscaffold_45G00438840 Rroxscaffold_45G00438870 Rroxscaffold_45G00438890 Rroxscaffold_45G00438980 Rroxscaffold_46G00448720 Rroxscaffold_46G00448740 Rroxscaffold_47G00443950 Rroxscaffold_47G00443980 Rroxscaffold_47G00444000 Rroxscaffold_47G00444090 Rroxscaffold_48G00448430 Rroxscaffold_48G00448470 Rroxscaffold_48G00448510 Rroxscaffold_49G00438600 Rroxscaffold_49G00438620 Rroxscaffold_49G00438680 Rroxscaffold_49G00438710 Rroxscaffold_49G00438740 Rroxscaffold_49G00438780 Rroxscaffold_50G00444160 Rroxscaffold_50G00444260 Rroxscaffold_50G00444290 Rroxscaffold_50G00444370 Rroxscaffold_50G00444400 Rroxscaffold_53G00449700 Rroxscaffold_53G00449730 Rroxscaffold_53G00449740 Rroxscaffold_54G00443410 Rroxscaffold_54G00443460 Rroxscaffold_54G00443490 Rroxscaffold_54G00443530 Rroxscaffold_54G00443580 Rroxscaffold_54G00443610 Rroxscaffold_54G00443670 Rroxscaffold_55G00450070 Rroxscaffold_55G00450130 Rroxscaffold_56G00450950 Rroxscaffold_58G00449000 Rroxscaffold_58G00449050 Rroxscaffold_59G00442150 Rroxscaffold_59G00442180 Rroxscaffold_59G00442250 Rroxscaffold_59G00442270 Rroxscaffold_59G00442280 Rroxscaffold_60G00448270 Rroxscaffold_60G00448290 Rroxscaffold_60G00448330 Rroxscaffold_60G00448400 Rroxscaffold_61G00449970 Rroxscaffold_62G00437930 Rroxscaffold_62G00438030 Rroxscaffold_64G00450690 Rroxscaffold_64G00450700 Rroxscaffold_65G00445280 Rroxscaffold_65G00445350 Rroxscaffold_65G00445390 Rroxscaffold_66G00437570 Rroxscaffold_66G00437600 Rroxscaffold_66G00437620 Rroxscaffold_66G00437690 Rroxscaffold_66G00437730 Rroxscaffold_66G00437770 Rroxscaffold_66G00437860 Rroxscaffold_68G00447000 Rroxscaffold_68G00447040 Rroxscaffold_69G00446680 Rroxscaffold_69G00446780 Rroxscaffold_69G00446790 Rroxscaffold_69G00446810 Rroxscaffold_6G00387760 Rroxscaffold_6G00387790 Rroxscaffold_6G00387830 Rroxscaffold_6G00387840 Rroxscaffold_70G00446290 Rroxscaffold_70G00446390 Rroxscaffold_71G00445730 Rroxscaffold_71G00445750 Rroxscaffold_72G00449340 Rroxscaffold_72G00449380 Rroxscaffold_73G00439090 Rroxscaffold_73G00439120 Rroxscaffold_73G00439190 Rroxscaffold_73G00439210 Rroxscaffold_73G00439250 Rroxscaffold_74G00442890 Rroxscaffold_74G00442960 Rroxscaffold_75G00447280 Rroxscaffold_75G00447300 Rroxscaffold_75G00447340 Rroxscaffold_75G00447390 Rroxscaffold_75G00447410 Rroxscaffold_75G00447440 Rroxscaffold_76G00448590 Rroxscaffold_78G00449630 Rroxscaffold_78G00449640 Rroxscaffold_79G00450250 Rroxscaffold_80G00450280 Rroxscaffold_80G00450300 Rroxscaffold_80G00450310 Rroxscaffold_81G00450490 Rroxscaffold_82G00450810 Rroxscaffold_86G00451260 Rroxscaffold_87G00451290 Rroxscaffold_87G00451300 Rroxscaffold_87G00451320 Rroxscaffold_88G00451390 Rroxscaffold_90G00448810 Rroxscaffold_91G00442980 Rroxscaffold_91G00443040 Rroxscaffold_92G00446460 Rroxscaffold_92G00446490 Rroxscaffold_92G00446500 Rroxscaffold_92G00446520 Rroxscaffold_92G00446540 Rroxscaffold_92G00446560 Rroxscaffold_93G00440970 Rroxscaffold_93G00440990 Rroxscaffold_94G00445800 Rroxscaffold_94G00445870 Rroxscaffold_94G00445950 Rroxscaffold_94G00445990 Rroxscaffold_95G00449230 Rroxscaffold_95G00449260 Rroxscaffold_95G00449270 Rroxscaffold_96G00449080 Rroxscaffold_97G00442330 Rroxscaffold_97G00442350 Rroxscaffold_97G00442360 Rroxscaffold_98G00451340 Rroxscaffold_99G00451190 Rroxscaffold_99G00451210

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 186
AccII CGCG 6 cut(s) 60, 69, 113, 207, 209, 266
AccIII TCCGGA 1 cut(s) 244
AciI CCGC 7 cut(s) 113, 116, 183, 198, 209, 230, 286
AclWI GGATC 1 cut(s) 20
AcsI RAATTY 1 cut(s) 95
AfaI GTAC 2 cut(s) 258, 277
AfiI CCNNNNNNNGG 5 cut(s) 106, 112, 157, 173, 186
AgsI TTSAA 2 cut(s) 13, 239
AhdI GACNNNNNGTC 1 cut(s) 59
AjiI CACGTC 1 cut(s) 203
AjnI CCWGG 1 cut(s) 150
Alw21I GWGCWC 1 cut(s) 197
Alw26I GTCTC 2 cut(s) 28, 300
AlwI GGATC 1 cut(s) 20
AlwNI CAGNNNCTG 1 cut(s) 186
Aor13HI TCCGGA 1 cut(s) 244
AoxI GGCC 1 cut(s) 231
ApoI RAATTY 1 cut(s) 95
AspLEI GCGC 5 cut(s) 60, 69, 209, 223, 268
AspS9I GGNCC 3 cut(s) 177, 232, 250
AsuC2I CCSGG 3 cut(s) 107, 227, 270
AsuII TTCGAA 1 cut(s) 76
AvaII GGWCC 2 cut(s) 177, 250
Bbv12I GWGCWC 1 cut(s) 197
BceAI ACGGC 1 cut(s) 174
BciT130I CCWGG 1 cut(s) 152
BcnI CCSGG 3 cut(s) 107, 227, 270
BcoDI GTCTC 2 cut(s) 28, 300
BisI GCNGC 3 cut(s) 114, 184, 231
BlpI GCTNAGC 1 cut(s) 162
BlsI GCNGC 3 cut(s) 115, 185, 232
Bme1390I CCNGG 4 cut(s) 107, 152, 227, 270
Bme18I GGWCC 2 cut(s) 177, 250
BmeRI GACNNNNNGTC 1 cut(s) 59
BmgBI CACGTC 1 cut(s) 203
BmgT120I GGNCC 3 cut(s) 177, 232, 250
BmiI GGNNCC 1 cut(s) 178
BmrFI CCNGG 4 cut(s) 107, 152, 227, 270
BmsI GCATC 1 cut(s) 297
Bpu1102I GCTNAGC 1 cut(s) 162
Bpu14I TTCGAA 1 cut(s) 76
BpuMI CCSGG 3 cut(s) 107, 227, 270
BsaI GGTCTC 1 cut(s) 300
BsaJI CCNNGG 3 cut(s) 150, 225, 299
BsaWI WCCGGW 2 cut(s) 215, 244
BsaXI ACNNNNNCTCC 2 cut(s) 161, 191
Bsc4I CCNNNNNNNGG 5 cut(s) 106, 112, 157, 173, 186
BseAI TCCGGA 1 cut(s) 244
BseBI CCWGG 1 cut(s) 152
BseDI CCNNGG 3 cut(s) 150, 225, 299
BseLI CCNNNNNNNGG 5 cut(s) 106, 112, 157, 173, 186
BseMII CTCAG 1 cut(s) 176
Bsh1236I CGCG 6 cut(s) 60, 69, 113, 207, 209, 266
Bsh1285I CGRYCG 1 cut(s) 274
BshFI GGCC 1 cut(s) 233
BsiEI CGRYCG 1 cut(s) 274
BsiHKAI GWGCWC 1 cut(s) 197
BsiSI CCGG 6 cut(s) 106, 167, 216, 227, 245, 270
BslFI GGGAC 1 cut(s) 122
BslI CCNNNNNNNGG 5 cut(s) 106, 112, 157, 173, 186
BsmAI GTCTC 2 cut(s) 28, 300
BsmBI CGTCTC 1 cut(s) 28
BsmFI GGGAC 1 cut(s) 122
BsnI GGCC 1 cut(s) 233
Bso31I GGTCTC 1 cut(s) 300
Bsp119I TTCGAA 1 cut(s) 76
Bsp1286I GDGCHC 1 cut(s) 197
Bsp13I TCCGGA 1 cut(s) 244
Bsp143I GATC 1 cut(s) 25
Bsp1720I GCTNAGC 1 cut(s) 162
BspACI CCGC 7 cut(s) 113, 116, 183, 198, 209, 230, 286
BspANI GGCC 1 cut(s) 233
BspCNI CTCAG 1 cut(s) 175
BspEI TCCGGA 1 cut(s) 244
BspFNI CGCG 6 cut(s) 60, 69, 113, 207, 209, 266
BspLI GGNNCC 1 cut(s) 178
BspPI GGATC 1 cut(s) 20
BspQI GCTCTTC 1 cut(s) 185
BspT104I TTCGAA 1 cut(s) 76
BspTNI GGTCTC 1 cut(s) 300
BssECI CCNNGG 3 cut(s) 150, 225, 299
BssMI GATC 1 cut(s) 25
BssT1I CCWWGG 1 cut(s) 299
Bst2UI CCWGG 1 cut(s) 152
Bst4CI ACNGT 1 cut(s) 261
Bst6I CTCTTC 1 cut(s) 185
BstBI TTCGAA 1 cut(s) 76
BstC8I GCNNGC 1 cut(s) 143
BstDEI CTNAG 2 cut(s) 30, 162
BstFNI CGCG 6 cut(s) 60, 69, 113, 207, 209, 266
BstHHI GCGC 5 cut(s) 60, 69, 209, 223, 268
BstKTI GATC 1 cut(s) 28
BstMAI GTCTC 2 cut(s) 28, 300
BstMBI GATC 1 cut(s) 25
BstMCI CGRYCG 1 cut(s) 274
BstMWI GCNNNNNNNGC 6 cut(s) 64, 66, 122, 192, 206, 227
BstNI CCWGG 1 cut(s) 152
BstSCI CCNGG 4 cut(s) 105, 150, 225, 268
BstUI CGCG 6 cut(s) 60, 69, 113, 207, 209, 266
BsuRI GGCC 1 cut(s) 233
BtrI CACGTC 1 cut(s) 203
Cac8I GCNNGC 1 cut(s) 143
CaiI CAGNNNCTG 1 cut(s) 186
CfoI GCGC 5 cut(s) 60, 69, 209, 223, 268
Cfr13I GGNCC 3 cut(s) 177, 232, 250
CseI GACGC 3 cut(s) 49, 119, 131
Csp6I GTAC 2 cut(s) 257, 276
CviJI RGCY 6 cut(s) 46, 141, 161, 166, 186, 233
CviKI_1 RGCY 6 cut(s) 46, 141, 161, 166, 186, 233
CviQI GTAC 2 cut(s) 257, 276
DdeI CTNAG 2 cut(s) 30, 162
DpnI GATC 1 cut(s) 27
DpnII GATC 1 cut(s) 25
DriI GACNNNNNGTC 1 cut(s) 59
Eam1104I CTCTTC 1 cut(s) 185
Eam1105I GACNNNNNGTC 1 cut(s) 59
EarI CTCTTC 1 cut(s) 185
Eco130I CCWWGG 1 cut(s) 299
Eco31I GGTCTC 1 cut(s) 300
Eco47I GGWCC 2 cut(s) 177, 250
EcoRII CCWGG 1 cut(s) 150
EcoT14I CCWWGG 1 cut(s) 299
ErhI CCWWGG 1 cut(s) 299
Esp3I CGTCTC 1 cut(s) 28
FaiI YATR 1 cut(s) 282
FaqI GGGAC 1 cut(s) 122
Fnu4HI GCNGC 3 cut(s) 114, 184, 231
Fsp4HI GCNGC 3 cut(s) 114, 184, 231
GlaI GCGC 5 cut(s) 59, 68, 208, 222, 267
GluI GCNGC 3 cut(s) 114, 184, 231
HaeIII GGCC 1 cut(s) 233
HapII CCGG 6 cut(s) 106, 167, 216, 227, 245, 270
HgaI GACGC 3 cut(s) 49, 119, 131
HhaI GCGC 5 cut(s) 60, 69, 209, 223, 268
Hin6I GCGC 5 cut(s) 58, 67, 207, 221, 266
HinP1I GCGC 5 cut(s) 58, 67, 207, 221, 266
HincII GTYRAC 1 cut(s) 121
HindII GTYRAC 1 cut(s) 121
HinfI GANTC 1 cut(s) 84
HpaII CCGG 6 cut(s) 106, 167, 216, 227, 245, 270
Hpy166II GTNNAC 1 cut(s) 121
Hpy188I TCNGA 1 cut(s) 53
Hpy188III TCNNGA 2 cut(s) 100, 245
Hpy8I GTNNAC 1 cut(s) 121
Hpy99I CGWCG 1 cut(s) 207
HpyAV CCTTC 1 cut(s) 7
HpyCH4III ACNGT 1 cut(s) 261
HpyCH4IV ACGT 1 cut(s) 202
HpyF10VI GCNNNNNNNGC 6 cut(s) 64, 66, 122, 192, 206, 227
HpyF3I CTNAG 2 cut(s) 30, 162
HpySE526I ACGT 1 cut(s) 202
HspAI GCGC 5 cut(s) 58, 67, 207, 221, 266
Kpn2I TCCGGA 1 cut(s) 244
Kzo9I GATC 1 cut(s) 25
LguI GCTCTTC 1 cut(s) 185
LweI GCATC 1 cut(s) 297
MaeII ACGT 1 cut(s) 202
MalI GATC 1 cut(s) 27
MboI GATC 1 cut(s) 25
MboII GAAGA 1 cut(s) 202
MhlI GDGCHC 1 cut(s) 197
MluCI AATT 1 cut(s) 95
MmeI TCCRAC 1 cut(s) 76
MnlI CCTC 2 cut(s) 163, 241
MroI TCCGGA 1 cut(s) 244
MseI TTAA 2 cut(s) 92, 135
MspA1I CMGCKG 1 cut(s) 183
MspI CCGG 6 cut(s) 106, 167, 216, 227, 245, 270
MspR9I CCNGG 4 cut(s) 107, 152, 227, 270
MvaI CCWGG 1 cut(s) 152
MvnI CGCG 6 cut(s) 60, 69, 113, 207, 209, 266
MwoI GCNNNNNNNGC 6 cut(s) 64, 66, 122, 192, 206, 227
NciI CCSGG 3 cut(s) 107, 227, 270
NdeII GATC 1 cut(s) 25
NlaIV GGNNCC 1 cut(s) 178
NspV TTCGAA 1 cut(s) 76
PciSI GCTCTTC 1 cut(s) 185
PfeI GAWTC 1 cut(s) 84
PflMI CCANNNNNTGG 1 cut(s) 186
PkrI GCNGC 3 cut(s) 115, 185, 232
Psp6I CCWGG 1 cut(s) 150
PspGI CCWGG 1 cut(s) 150
PspN4I GGNNCC 1 cut(s) 178
PspPI GGNCC 3 cut(s) 177, 232, 250
PstNI CAGNNNCTG 1 cut(s) 186
RsaI GTAC 2 cut(s) 258, 277
RsaNI GTAC 2 cut(s) 257, 276
SapI GCTCTTC 1 cut(s) 185
SaqAI TTAA 2 cut(s) 92, 135
SatI GCNGC 3 cut(s) 114, 184, 231
Sau3AI GATC 1 cut(s) 25
Sau96I GGNCC 3 cut(s) 177, 232, 250
ScrFI CCNGG 4 cut(s) 107, 152, 227, 270
SduI GDGCHC 1 cut(s) 197
SetI ASST 4 cut(s) 174, 205, 296, 305
SfaNI GCATC 1 cut(s) 297
SfuI TTCGAA 1 cut(s) 76
SinI GGWCC 2 cut(s) 177, 250
Sse9I AATT 1 cut(s) 95
SsiI CCGC 7 cut(s) 113, 116, 183, 198, 209, 230, 286
StyD4I CCNGG 4 cut(s) 105, 150, 225, 268
StyI CCWWGG 1 cut(s) 299
TaaI ACNGT 1 cut(s) 261
TaiI ACGT 1 cut(s) 205
TaqI TCGA 2 cut(s) 24, 76
TaqII GACCGA 1 cut(s) 267
TasI AATT 1 cut(s) 95
TauI GCSGC 3 cut(s) 116, 186, 233
TfiI GAWTC 1 cut(s) 84
Tru1I TTAA 2 cut(s) 92, 135
Tru9I TTAA 2 cut(s) 92, 135
Van91I CCANNNNNTGG 1 cut(s) 186
VpaK11BI GGWCC 2 cut(s) 177, 250
XapI RAATTY 1 cut(s) 95
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.