Rroxscaffold_49G00438600

protein Sb1514s002020 source

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000049
OG0000104
Physical Location & Seq
Reverse (-)
20069 .. 20755
687 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_49G00438600.1

Sequence Viewer

Length: 288 bp
ATGCGGGATGAACCGGAAGCCGGTTACGGTGCCCAACTACGCGCTAACCTAGAACCCACAAAGGGTGTTGGTCGATTAAGACAGCAGACGGGAGTCCGAGACGTCGGCGGGGCCTCGGGAAGAGTTATCTTTTCTCGTTTAACAGCCTGCCCACCCCGGAAACGGCTCAGCCCGGAGGTAGGGTCCAGCGGCCGGAAGAGCACCGCACGTCGCGTGGTGTCCGGCGCCCCCGCCGCCCTTGAAAATCCGGAGGACCGAGTGCCATTCACGCCCGGGCCGTACTCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

95

Amino Acids

10.1

Weight (kDa)

10.78

Isoelectric Point (pI)

54.18

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000104)

Species Orthologous Gene IDs
pyrus_communis pycom2246g00050 pycom2246g00060 pycom2246g00070 pycom2246g00100 pycom2246g00170 pycom2575g00020 pycom520g01350
rosa_roxburghii Rroxscaffold_102G00450880 Rroxscaffold_102G00450940 Rroxscaffold_103G00450570 Rroxscaffold_104G00444660 Rroxscaffold_104G00444710 Rroxscaffold_104G00444740 Rroxscaffold_104G00444800 Rroxscaffold_104G00444860 Rroxscaffold_105G00447090 Rroxscaffold_105G00447190 Rroxscaffold_105G00447230 Rroxscaffold_106G00451430 Rroxscaffold_107G00442440 Rroxscaffold_107G00442550 Rroxscaffold_107G00442640 Rroxscaffold_107G00442690 Rroxscaffold_111G00451560 Rroxscaffold_112G00451580 Rroxscaffold_113G00451620 Rroxscaffold_115G00451690 Rroxscaffold_118G00451780 Rroxscaffold_122G00451870 Rroxscaffold_123G00451910 Rroxscaffold_124G00451960 Rroxscaffold_128G00452050 Rroxscaffold_12G00450640 Rroxscaffold_131G00452100 Rroxscaffold_132G00452130 Rroxscaffold_138G00452190 Rroxscaffold_13G00448670 Rroxscaffold_14G00441890 Rroxscaffold_14G00441960 Rroxscaffold_14G00442010 Rroxscaffold_14G00442070 Rroxscaffold_15G00447460 Rroxscaffold_15G00447510 Rroxscaffold_15G00447580 Rroxscaffold_162G00450750 Rroxscaffold_17G00435460 Rroxscaffold_17G00435510 Rroxscaffold_17G00435570 Rroxscaffold_17G00435640 Rroxscaffold_17G00435910 Rroxscaffold_18G00446090 Rroxscaffold_18G00446110 Rroxscaffold_18G00446170 Rroxscaffold_19G00448930 Rroxscaffold_1G00000010 Rroxscaffold_1G00000090 Rroxscaffold_1G00000130 Rroxscaffold_20G00445030 Rroxscaffold_20G00445040 Rroxscaffold_20G00445070 Rroxscaffold_20G00445110 Rroxscaffold_21G00439440 Rroxscaffold_21G00439460 Rroxscaffold_21G00439470 Rroxscaffold_21G00439520 Rroxscaffold_21G00439570 Rroxscaffold_21G00439660 Rroxscaffold_22G00439850 Rroxscaffold_22G00439990 Rroxscaffold_22G00440030 Rroxscaffold_25G00450140 Rroxscaffold_25G00450170 Rroxscaffold_26G00447770 Rroxscaffold_27G00446650 Rroxscaffold_29G00441730 Rroxscaffold_29G00441740 Rroxscaffold_29G00441760 Rroxscaffold_29G00441780 Rroxscaffold_29G00441830 Rroxscaffold_29G00441870 Rroxscaffold_30G00449490 Rroxscaffold_30G00449510 Rroxscaffold_31G00438130 Rroxscaffold_31G00438170 Rroxscaffold_31G00438270 Rroxscaffold_32G00442790 Rroxscaffold_32G00442800 Rroxscaffold_32G00442840 Rroxscaffold_33G00439700 Rroxscaffold_33G00439710 Rroxscaffold_34G00443170 Rroxscaffold_34G00443210 Rroxscaffold_34G00443280 Rroxscaffold_34G00443310 Rroxscaffold_35G00441010 Rroxscaffold_35G00441120 Rroxscaffold_35G00441180 Rroxscaffold_35G00441260 Rroxscaffold_35G00441290 Rroxscaffold_36G00440070 Rroxscaffold_36G00440110 Rroxscaffold_36G00440140 Rroxscaffold_36G00440190 Rroxscaffold_37G00445180 Rroxscaffold_37G00445190 Rroxscaffold_37G00445230 Rroxscaffold_37G00445240 Rroxscaffold_37G00445270 Rroxscaffold_38G00444450 Rroxscaffold_38G00444530 Rroxscaffold_38G00444570 Rroxscaffold_38G00444600 Rroxscaffold_38G00444620 Rroxscaffold_39G00448260 Rroxscaffold_40G00447720 Rroxscaffold_43G00449810 Rroxscaffold_43G00449840 Rroxscaffold_43G00449900 Rroxscaffold_44G00440460 Rroxscaffold_44G00440470 Rroxscaffold_44G00440510 Rroxscaffold_44G00440600 Rroxscaffold_44G00440640 Rroxscaffold_45G00438810 Rroxscaffold_45G00438840 Rroxscaffold_45G00438870 Rroxscaffold_45G00438890 Rroxscaffold_45G00438980 Rroxscaffold_46G00448720 Rroxscaffold_46G00448740 Rroxscaffold_47G00443950 Rroxscaffold_47G00443980 Rroxscaffold_47G00444000 Rroxscaffold_47G00444090 Rroxscaffold_48G00448430 Rroxscaffold_48G00448470 Rroxscaffold_48G00448510 Rroxscaffold_49G00438600 Rroxscaffold_49G00438620 Rroxscaffold_49G00438680 Rroxscaffold_49G00438710 Rroxscaffold_49G00438740 Rroxscaffold_49G00438780 Rroxscaffold_50G00444160 Rroxscaffold_50G00444260 Rroxscaffold_50G00444290 Rroxscaffold_50G00444370 Rroxscaffold_50G00444400 Rroxscaffold_53G00449700 Rroxscaffold_53G00449730 Rroxscaffold_53G00449740 Rroxscaffold_54G00443410 Rroxscaffold_54G00443460 Rroxscaffold_54G00443490 Rroxscaffold_54G00443530 Rroxscaffold_54G00443580 Rroxscaffold_54G00443610 Rroxscaffold_54G00443670 Rroxscaffold_55G00450070 Rroxscaffold_55G00450130 Rroxscaffold_56G00450950 Rroxscaffold_58G00449000 Rroxscaffold_58G00449050 Rroxscaffold_59G00442150 Rroxscaffold_59G00442180 Rroxscaffold_59G00442250 Rroxscaffold_59G00442270 Rroxscaffold_59G00442280 Rroxscaffold_60G00448270 Rroxscaffold_60G00448290 Rroxscaffold_60G00448330 Rroxscaffold_60G00448400 Rroxscaffold_61G00449970 Rroxscaffold_62G00437930 Rroxscaffold_62G00438030 Rroxscaffold_64G00450690 Rroxscaffold_64G00450700 Rroxscaffold_65G00445280 Rroxscaffold_65G00445350 Rroxscaffold_65G00445390 Rroxscaffold_66G00437570 Rroxscaffold_66G00437600 Rroxscaffold_66G00437620 Rroxscaffold_66G00437690 Rroxscaffold_66G00437730 Rroxscaffold_66G00437770 Rroxscaffold_66G00437860 Rroxscaffold_68G00447000 Rroxscaffold_68G00447040 Rroxscaffold_69G00446680 Rroxscaffold_69G00446780 Rroxscaffold_69G00446790 Rroxscaffold_69G00446810 Rroxscaffold_6G00387760 Rroxscaffold_6G00387790 Rroxscaffold_6G00387830 Rroxscaffold_6G00387840 Rroxscaffold_70G00446290 Rroxscaffold_70G00446390 Rroxscaffold_71G00445730 Rroxscaffold_71G00445750 Rroxscaffold_72G00449340 Rroxscaffold_72G00449380 Rroxscaffold_73G00439090 Rroxscaffold_73G00439120 Rroxscaffold_73G00439190 Rroxscaffold_73G00439210 Rroxscaffold_73G00439250 Rroxscaffold_74G00442890 Rroxscaffold_74G00442960 Rroxscaffold_75G00447280 Rroxscaffold_75G00447300 Rroxscaffold_75G00447340 Rroxscaffold_75G00447390 Rroxscaffold_75G00447410 Rroxscaffold_75G00447440 Rroxscaffold_76G00448590 Rroxscaffold_78G00449630 Rroxscaffold_78G00449640 Rroxscaffold_79G00450250 Rroxscaffold_80G00450280 Rroxscaffold_80G00450300 Rroxscaffold_80G00450310 Rroxscaffold_81G00450490 Rroxscaffold_82G00450810 Rroxscaffold_86G00451260 Rroxscaffold_87G00451290 Rroxscaffold_87G00451300 Rroxscaffold_87G00451320 Rroxscaffold_88G00451390 Rroxscaffold_90G00448810 Rroxscaffold_91G00442980 Rroxscaffold_91G00443040 Rroxscaffold_92G00446460 Rroxscaffold_92G00446490 Rroxscaffold_92G00446500 Rroxscaffold_92G00446520 Rroxscaffold_92G00446540 Rroxscaffold_92G00446560 Rroxscaffold_93G00440970 Rroxscaffold_93G00440990 Rroxscaffold_94G00445800 Rroxscaffold_94G00445870 Rroxscaffold_94G00445950 Rroxscaffold_94G00445990 Rroxscaffold_95G00449230 Rroxscaffold_95G00449260 Rroxscaffold_95G00449270 Rroxscaffold_96G00449080 Rroxscaffold_97G00442330 Rroxscaffold_97G00442350 Rroxscaffold_97G00442360 Rroxscaffold_98G00451340 Rroxscaffold_99G00451190 Rroxscaffold_99G00451210

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 105
AccB1I GGYRCC 2 cut(s) 29, 224
AccII CGCG 2 cut(s) 42, 213
AccIII TCCGGA 1 cut(s) 247
AciI CCGC 6 cut(s) 4, 108, 189, 204, 231, 234
AcoI YGGCCR 1 cut(s) 190
AcyI GRCGYC 2 cut(s) 102, 225
AfaI GTAC 1 cut(s) 281
AfiI CCNNNNNNNGG 5 cut(s) 20, 62, 162, 179, 192
AgsI TTSAA 1 cut(s) 242
AjiI CACGTC 1 cut(s) 209
Alw21I GWGCWC 1 cut(s) 203
Alw26I GTCTC 1 cut(s) 93
Ama87I CYCGRG 2 cut(s) 115, 272
Aor13HI TCCGGA 1 cut(s) 247
AoxI GGCC 3 cut(s) 111, 190, 275
AspLEI GCGC 2 cut(s) 44, 227
AspS9I GGNCC 4 cut(s) 111, 183, 253, 275
AsuC2I CCSGG 4 cut(s) 157, 173, 273, 274
AvaI CYCGRG 2 cut(s) 115, 272
AvaII GGWCC 2 cut(s) 183, 253
BaeGI GKGCMC 1 cut(s) 34
BanI GGYRCC 2 cut(s) 29, 224
Bbv12I GWGCWC 1 cut(s) 203
BceAI ACGGC 2 cut(s) 179, 262
BcnI CCSGG 4 cut(s) 157, 173, 273, 274
BcoDI GTCTC 1 cut(s) 93
BfaI CTAG 1 cut(s) 50
BfoI RGCGCY 1 cut(s) 228
BisI GCNGC 2 cut(s) 190, 234
BlpI GCTNAGC 1 cut(s) 167
BlsI GCNGC 2 cut(s) 191, 235
Bme1390I CCNGG 4 cut(s) 157, 173, 273, 274
Bme18I GGWCC 2 cut(s) 183, 253
BmeT110I CYCGRG 2 cut(s) 115, 272
BmgBI CACGTC 1 cut(s) 209
BmgT120I GGNCC 4 cut(s) 111, 183, 253, 275
BmiI GGNNCC 4 cut(s) 31, 112, 184, 226
BmrFI CCNGG 4 cut(s) 157, 173, 273, 274
BoxI GACNNNNGTC 1 cut(s) 92
Bpu1102I GCTNAGC 1 cut(s) 167
BpuMI CCSGG 4 cut(s) 157, 173, 273, 274
BsaHI GRCGYC 2 cut(s) 102, 225
BsaJI CCNNGG 3 cut(s) 114, 155, 272
BsaWI WCCGGW 2 cut(s) 13, 247
BsaXI ACNNNNNCTCC 2 cut(s) 167, 197
Bsc4I CCNNNNNNNGG 5 cut(s) 20, 62, 162, 179, 192
Bse118I RCCGGY 1 cut(s) 20
BseAI TCCGGA 1 cut(s) 247
BseDI CCNNGG 3 cut(s) 114, 155, 272
BseGI GGATG 1 cut(s) 13
BseLI CCNNNNNNNGG 5 cut(s) 20, 62, 162, 179, 192
BseMII CTCAG 1 cut(s) 181
BseSI GKGCMC 1 cut(s) 34
BseX3I CGGCCG 1 cut(s) 190
Bsh1236I CGCG 2 cut(s) 42, 213
Bsh1285I CGRYCG 1 cut(s) 193
BshFI GGCC 3 cut(s) 113, 192, 277
BshNI GGYRCC 2 cut(s) 29, 224
BsiEI CGRYCG 1 cut(s) 193
BsiHKAI GWGCWC 1 cut(s) 203
BsiHKCI CYCGRG 2 cut(s) 115, 272
BsiSI CCGG 8 cut(s) 14, 21, 157, 173, 193, 222, 248, 273
BslI CCNNNNNNNGG 5 cut(s) 20, 62, 162, 179, 192
BsmAI GTCTC 1 cut(s) 93
BsmBI CGTCTC 1 cut(s) 93
BsnI GGCC 3 cut(s) 113, 192, 277
BsoBI CYCGRG 2 cut(s) 115, 272
Bsp1286I GDGCHC 2 cut(s) 34, 203
Bsp13I TCCGGA 1 cut(s) 247
Bsp1720I GCTNAGC 1 cut(s) 167
BspACI CCGC 6 cut(s) 4, 108, 189, 204, 231, 234
BspANI GGCC 3 cut(s) 113, 192, 277
BspCNI CTCAG 1 cut(s) 180
BspEI TCCGGA 1 cut(s) 247
BspFNI CGCG 2 cut(s) 42, 213
BspLI GGNNCC 4 cut(s) 31, 112, 184, 226
BspQI GCTCTTC 1 cut(s) 191
BspT107I GGYRCC 2 cut(s) 29, 224
BsrFI RCCGGY 1 cut(s) 20
BssAI RCCGGY 1 cut(s) 20
BssECI CCNNGG 3 cut(s) 114, 155, 272
BssNI GRCGYC 2 cut(s) 102, 225
Bst4CI ACNGT 1 cut(s) 29
Bst6I CTCTTC 2 cut(s) 115, 191
BstACI GRCGYC 2 cut(s) 102, 225
BstC8I GCNNGC 1 cut(s) 148
BstDEI CTNAG 1 cut(s) 167
BstF5I GGATG 1 cut(s) 13
BstFNI CGCG 2 cut(s) 42, 213
BstH2I RGCGCY 1 cut(s) 228
BstHHI GCGC 2 cut(s) 44, 227
BstMAI GTCTC 1 cut(s) 93
BstMCI CGRYCG 1 cut(s) 193
BstMWI GCNNNNNNNGC 3 cut(s) 198, 233, 268
BstPAI GACNNNNGTC 1 cut(s) 92
BstSCI CCNGG 4 cut(s) 155, 171, 271, 272
BstSLI GKGCMC 1 cut(s) 34
BstUI CGCG 2 cut(s) 42, 213
BstZI CGGCCG 1 cut(s) 190
BsuRI GGCC 3 cut(s) 113, 192, 277
BtrI CACGTC 1 cut(s) 209
BtsCI GGATG 1 cut(s) 13
Cac8I GCNNGC 1 cut(s) 148
CfoI GCGC 2 cut(s) 44, 227
Cfr10I RCCGGY 1 cut(s) 20
Cfr13I GGNCC 4 cut(s) 111, 183, 253, 275
Cfr9I CCCGGG 1 cut(s) 272
Csp6I GTAC 1 cut(s) 280
CviJI RGCY 7 cut(s) 20, 113, 146, 166, 171, 192, 277
CviKI_1 RGCY 7 cut(s) 20, 113, 146, 166, 171, 192, 277
CviQI GTAC 1 cut(s) 280
DdeI CTNAG 1 cut(s) 167
DinI GGCGCC 1 cut(s) 226
EaeI YGGCCR 1 cut(s) 190
EagI CGGCCG 1 cut(s) 190
Eam1104I CTCTTC 2 cut(s) 115, 191
EarI CTCTTC 2 cut(s) 115, 191
EclXI CGGCCG 1 cut(s) 190
Eco47I GGWCC 2 cut(s) 183, 253
Eco52I CGGCCG 1 cut(s) 190
Eco88I CYCGRG 2 cut(s) 115, 272
EcoO109I RGGNCCY 1 cut(s) 111
EgeI GGCGCC 1 cut(s) 226
EheI GGCGCC 1 cut(s) 226
Esp3I CGTCTC 1 cut(s) 93
FaiI YATR 1 cut(s) 286
FauI CCCGC 2 cut(s) 101, 238
Fnu4HI GCNGC 2 cut(s) 190, 234
FokI GGATG 1 cut(s) 20
Fsp4HI GCNGC 2 cut(s) 190, 234
FspBI CTAG 1 cut(s) 50
GlaI GCGC 2 cut(s) 43, 226
GluI GCNGC 2 cut(s) 190, 234
HaeII RGCGCY 1 cut(s) 228
HaeIII GGCC 3 cut(s) 113, 192, 277
HapII CCGG 8 cut(s) 14, 21, 157, 173, 193, 222, 248, 273
HhaI GCGC 2 cut(s) 44, 227
Hin1I GRCGYC 2 cut(s) 102, 225
Hin6I GCGC 2 cut(s) 42, 225
HinP1I GCGC 2 cut(s) 42, 225
HinfI GANTC 1 cut(s) 93
HpaII CCGG 8 cut(s) 14, 21, 157, 173, 193, 222, 248, 273
Hpy188I TCNGA 1 cut(s) 98
Hpy188III TCNNGA 2 cut(s) 117, 248
Hpy99I CGWCG 2 cut(s) 107, 213
HpyCH4III ACNGT 1 cut(s) 29
HpyCH4IV ACGT 2 cut(s) 102, 208
HpyF10VI GCNNNNNNNGC 3 cut(s) 198, 233, 268
HpyF3I CTNAG 1 cut(s) 167
HpySE526I ACGT 2 cut(s) 102, 208
Hsp92I GRCGYC 2 cut(s) 102, 225
HspAI GCGC 2 cut(s) 42, 225
KasI GGCGCC 1 cut(s) 224
Kpn2I TCCGGA 1 cut(s) 247
LguI GCTCTTC 1 cut(s) 191
LpnPI CCDG 9 cut(s) 27, 34, 160, 170, 186, 199, 206, 235, 261
MaeI CTAG 1 cut(s) 50
MaeII ACGT 2 cut(s) 102, 208
MaeIII GTNAC 1 cut(s) 23
MboII GAAGA 2 cut(s) 132, 208
MhlI GDGCHC 2 cut(s) 34, 203
Mly113I GGCGCC 1 cut(s) 225
MlyI GAGTC 1 cut(s) 102
MnlI CCTC 3 cut(s) 124, 169, 244
MroI TCCGGA 1 cut(s) 247
MseI TTAA 2 cut(s) 77, 140
MspA1I CMGCKG 1 cut(s) 189
MspI CCGG 8 cut(s) 14, 21, 157, 173, 193, 222, 248, 273
MspR9I CCNGG 4 cut(s) 157, 173, 273, 274
MvnI CGCG 2 cut(s) 42, 213
MwoI GCNNNNNNNGC 3 cut(s) 198, 233, 268
NarI GGCGCC 1 cut(s) 225
NciI CCSGG 4 cut(s) 157, 173, 273, 274
NlaIV GGNNCC 4 cut(s) 31, 112, 184, 226
PciSI GCTCTTC 1 cut(s) 191
PcsI WCGNNNNNNNCGW 1 cut(s) 275
PkrI GCNGC 2 cut(s) 191, 235
PleI GAGTC 1 cut(s) 101
PluTI GGCGCC 1 cut(s) 228
PpsI GAGTC 1 cut(s) 101
PshAI GACNNNNGTC 1 cut(s) 92
PspN4I GGNNCC 4 cut(s) 31, 112, 184, 226
PspPI GGNCC 4 cut(s) 111, 183, 253, 275
RsaI GTAC 1 cut(s) 281
RsaNI GTAC 1 cut(s) 280
SapI GCTCTTC 1 cut(s) 191
SaqAI TTAA 2 cut(s) 77, 140
SatI GCNGC 2 cut(s) 190, 234
Sau96I GGNCC 4 cut(s) 111, 183, 253, 275
SchI GAGTC 1 cut(s) 102
ScrFI CCNGG 4 cut(s) 157, 173, 273, 274
SduI GDGCHC 2 cut(s) 34, 203
SetI ASST 4 cut(s) 51, 105, 180, 211
SfoI GGCGCC 1 cut(s) 226
SinI GGWCC 2 cut(s) 183, 253
SmaI CCCGGG 1 cut(s) 274
SrfI GCCCGGGC 1 cut(s) 274
SsiI CCGC 6 cut(s) 4, 108, 189, 204, 231, 234
SspDI GGCGCC 1 cut(s) 224
SspMI CTAG 1 cut(s) 50
StyD4I CCNGG 4 cut(s) 155, 171, 271, 272
TaaI ACNGT 1 cut(s) 29
TaiI ACGT 2 cut(s) 105, 211
TaqI TCGA 1 cut(s) 73
TaqII GACCGA 1 cut(s) 270
TauI GCSGC 2 cut(s) 192, 236
Tru1I TTAA 2 cut(s) 77, 140
Tru9I TTAA 2 cut(s) 77, 140
TspDTI ATGAA 1 cut(s) 24
TspMI CCCGGG 1 cut(s) 272
VpaK11BI GGWCC 2 cut(s) 183, 253
XmaI CCCGGG 1 cut(s) 272
XspI CTAG 1 cut(s) 50
ZraI GACGTC 1 cut(s) 103
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.