Rroxscaffold_162G00450750

protein Sb1514s002020 source

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000162
OG0000104
Physical Location & Seq
Forward (+)
5631 .. 10151
4521 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_162G00450750.1

Sequence Viewer

Length: 1335 bp
ATGGTAGGCAGCATGCGCCGTCTCGGCGTGCTTCGGCATCTGCGTGCTCCTGGTAACGGCCTGCGGGCTCCCCATTCGGCCCGTCTTGAAACACGGACCAAGGAGTCCGACATGTGTGCGAGTCAACGGGTGATTAAACCCGTAAGGCGCAAGGAAGCTAATGTGCGGGATCCCTTTGCGGGTGCACCGCCGACCGACCTTGATCTTCTCGAGAAGGGTTCGAGTGTGAGCATGCCTGTCGGGACCCGAAAGATGGACGGCGTGGCTGCTTTGTTGAGCCACGCCAAGGAATCGAGAGCTCCAAGTGGGCCATTTTTGCCTGCCCACCCTGGAAACGGCTCAGCCGGAGGTAGGGTCCAGCGGCTGGAAGAGCACCGCACGTCGCGTGGTGTCCGGCAAGGGAAGTCGGCAAAATGGATCCGTAACCTCGGGAAAAGGATTGGCTCCGAGGGCTGGGCACGGGGGTCCCAGTCCCGAACCCGTCGGCTGTCGGTGAACTGCTCGAGCTGCTTCCGCGGCGAGAGCGGGTCGCCGCGTGCCGGCCGGGGACGGACTGGGAACGCTCCTTCGGGGGCTTTCCCCGGCGTTCAACAGTCGACTCAGAACTGTGCTCTGAATGTCAAAGTGAAGAAATTCAACCAAGCGCGGGTAAACGGCGGGAGTAACTATGACTCTCTTAAGACGCTTCCTAACGAATGCGATGCCAAGCCAAGGCTAGGCAATGCCGTGGCTGACAGAGGCTTCCTAGCGAAGGATAATGCAATGCCGAGCCAAGGCTTTGCCAAGACAATGCCAAGGCTTGCTAGTGAGGCTAATGCAATATATTTGAATGATGCGTCGCCAGCACAAAGGCTGTGCGATCCGTCGAGTTATCATGAATCATCAATACAACGGGCAGAGCCCGCGTTGAAGGCTATGCAATGTCAAGCCAAGGCTTGGCAAGACAATGCCAAGGCTTGCCAACGAGGGCTAATGCAATGCCAAGACAATGGCGCAGCGGCTTGCCAAGGCTTGCTAGCGAGGCAATGGCTAATGCAATGCCAAGCCAAGCTTGCTAGCGAGGCTAATGCAATGCCAAGACAATGGCTAATGCTTGCTAGCGAGGCTAATGAAATGCCAAGCCAATGCAATGCTAATGCTTGCAAGGCTAACAATGCCAAGGCGCTTGCTAGCGAGGCTAATGCAATGCCAAGACAATGGCTAATGCTTGCTAGCGAGGCTAATGAAATGCCAAGCCAAGGCTTGCTAGCGAGGCTAATGCTTGCTAGTGAGGCTAATGCAATGCCAAGCCAAGCCTTGCTAGCGAGGCTAATGCAATGCCAAGACAATGGCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

444

Amino Acids

47.76

Weight (kDa)

10.08

Isoelectric Point (pI)

50.43

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000104)

Species Orthologous Gene IDs
pyrus_communis pycom2246g00050 pycom2246g00060 pycom2246g00070 pycom2246g00100 pycom2246g00170 pycom2575g00020 pycom520g01350
rosa_roxburghii Rroxscaffold_102G00450880 Rroxscaffold_102G00450940 Rroxscaffold_103G00450570 Rroxscaffold_104G00444660 Rroxscaffold_104G00444710 Rroxscaffold_104G00444740 Rroxscaffold_104G00444800 Rroxscaffold_104G00444860 Rroxscaffold_105G00447090 Rroxscaffold_105G00447190 Rroxscaffold_105G00447230 Rroxscaffold_106G00451430 Rroxscaffold_107G00442440 Rroxscaffold_107G00442550 Rroxscaffold_107G00442640 Rroxscaffold_107G00442690 Rroxscaffold_111G00451560 Rroxscaffold_112G00451580 Rroxscaffold_113G00451620 Rroxscaffold_115G00451690 Rroxscaffold_118G00451780 Rroxscaffold_122G00451870 Rroxscaffold_123G00451910 Rroxscaffold_124G00451960 Rroxscaffold_128G00452050 Rroxscaffold_12G00450640 Rroxscaffold_131G00452100 Rroxscaffold_132G00452130 Rroxscaffold_138G00452190 Rroxscaffold_13G00448670 Rroxscaffold_14G00441890 Rroxscaffold_14G00441960 Rroxscaffold_14G00442010 Rroxscaffold_14G00442070 Rroxscaffold_15G00447460 Rroxscaffold_15G00447510 Rroxscaffold_15G00447580 Rroxscaffold_162G00450750 Rroxscaffold_17G00435460 Rroxscaffold_17G00435510 Rroxscaffold_17G00435570 Rroxscaffold_17G00435640 Rroxscaffold_17G00435910 Rroxscaffold_18G00446090 Rroxscaffold_18G00446110 Rroxscaffold_18G00446170 Rroxscaffold_19G00448930 Rroxscaffold_1G00000010 Rroxscaffold_1G00000090 Rroxscaffold_1G00000130 Rroxscaffold_20G00445030 Rroxscaffold_20G00445040 Rroxscaffold_20G00445070 Rroxscaffold_20G00445110 Rroxscaffold_21G00439440 Rroxscaffold_21G00439460 Rroxscaffold_21G00439470 Rroxscaffold_21G00439520 Rroxscaffold_21G00439570 Rroxscaffold_21G00439660 Rroxscaffold_22G00439850 Rroxscaffold_22G00439990 Rroxscaffold_22G00440030 Rroxscaffold_25G00450140 Rroxscaffold_25G00450170 Rroxscaffold_26G00447770 Rroxscaffold_27G00446650 Rroxscaffold_29G00441730 Rroxscaffold_29G00441740 Rroxscaffold_29G00441760 Rroxscaffold_29G00441780 Rroxscaffold_29G00441830 Rroxscaffold_29G00441870 Rroxscaffold_30G00449490 Rroxscaffold_30G00449510 Rroxscaffold_31G00438130 Rroxscaffold_31G00438170 Rroxscaffold_31G00438270 Rroxscaffold_32G00442790 Rroxscaffold_32G00442800 Rroxscaffold_32G00442840 Rroxscaffold_33G00439700 Rroxscaffold_33G00439710 Rroxscaffold_34G00443170 Rroxscaffold_34G00443210 Rroxscaffold_34G00443280 Rroxscaffold_34G00443310 Rroxscaffold_35G00441010 Rroxscaffold_35G00441120 Rroxscaffold_35G00441180 Rroxscaffold_35G00441260 Rroxscaffold_35G00441290 Rroxscaffold_36G00440070 Rroxscaffold_36G00440110 Rroxscaffold_36G00440140 Rroxscaffold_36G00440190 Rroxscaffold_37G00445180 Rroxscaffold_37G00445190 Rroxscaffold_37G00445230 Rroxscaffold_37G00445240 Rroxscaffold_37G00445270 Rroxscaffold_38G00444450 Rroxscaffold_38G00444530 Rroxscaffold_38G00444570 Rroxscaffold_38G00444600 Rroxscaffold_38G00444620 Rroxscaffold_39G00448260 Rroxscaffold_40G00447720 Rroxscaffold_43G00449810 Rroxscaffold_43G00449840 Rroxscaffold_43G00449900 Rroxscaffold_44G00440460 Rroxscaffold_44G00440470 Rroxscaffold_44G00440510 Rroxscaffold_44G00440600 Rroxscaffold_44G00440640 Rroxscaffold_45G00438810 Rroxscaffold_45G00438840 Rroxscaffold_45G00438870 Rroxscaffold_45G00438890 Rroxscaffold_45G00438980 Rroxscaffold_46G00448720 Rroxscaffold_46G00448740 Rroxscaffold_47G00443950 Rroxscaffold_47G00443980 Rroxscaffold_47G00444000 Rroxscaffold_47G00444090 Rroxscaffold_48G00448430 Rroxscaffold_48G00448470 Rroxscaffold_48G00448510 Rroxscaffold_49G00438600 Rroxscaffold_49G00438620 Rroxscaffold_49G00438680 Rroxscaffold_49G00438710 Rroxscaffold_49G00438740 Rroxscaffold_49G00438780 Rroxscaffold_50G00444160 Rroxscaffold_50G00444260 Rroxscaffold_50G00444290 Rroxscaffold_50G00444370 Rroxscaffold_50G00444400 Rroxscaffold_53G00449700 Rroxscaffold_53G00449730 Rroxscaffold_53G00449740 Rroxscaffold_54G00443410 Rroxscaffold_54G00443460 Rroxscaffold_54G00443490 Rroxscaffold_54G00443530 Rroxscaffold_54G00443580 Rroxscaffold_54G00443610 Rroxscaffold_54G00443670 Rroxscaffold_55G00450070 Rroxscaffold_55G00450130 Rroxscaffold_56G00450950 Rroxscaffold_58G00449000 Rroxscaffold_58G00449050 Rroxscaffold_59G00442150 Rroxscaffold_59G00442180 Rroxscaffold_59G00442250 Rroxscaffold_59G00442270 Rroxscaffold_59G00442280 Rroxscaffold_60G00448270 Rroxscaffold_60G00448290 Rroxscaffold_60G00448330 Rroxscaffold_60G00448400 Rroxscaffold_61G00449970 Rroxscaffold_62G00437930 Rroxscaffold_62G00438030 Rroxscaffold_64G00450690 Rroxscaffold_64G00450700 Rroxscaffold_65G00445280 Rroxscaffold_65G00445350 Rroxscaffold_65G00445390 Rroxscaffold_66G00437570 Rroxscaffold_66G00437600 Rroxscaffold_66G00437620 Rroxscaffold_66G00437690 Rroxscaffold_66G00437730 Rroxscaffold_66G00437770 Rroxscaffold_66G00437860 Rroxscaffold_68G00447000 Rroxscaffold_68G00447040 Rroxscaffold_69G00446680 Rroxscaffold_69G00446780 Rroxscaffold_69G00446790 Rroxscaffold_69G00446810 Rroxscaffold_6G00387760 Rroxscaffold_6G00387790 Rroxscaffold_6G00387830 Rroxscaffold_6G00387840 Rroxscaffold_70G00446290 Rroxscaffold_70G00446390 Rroxscaffold_71G00445730 Rroxscaffold_71G00445750 Rroxscaffold_72G00449340 Rroxscaffold_72G00449380 Rroxscaffold_73G00439090 Rroxscaffold_73G00439120 Rroxscaffold_73G00439190 Rroxscaffold_73G00439210 Rroxscaffold_73G00439250 Rroxscaffold_74G00442890 Rroxscaffold_74G00442960 Rroxscaffold_75G00447280 Rroxscaffold_75G00447300 Rroxscaffold_75G00447340 Rroxscaffold_75G00447390 Rroxscaffold_75G00447410 Rroxscaffold_75G00447440 Rroxscaffold_76G00448590 Rroxscaffold_78G00449630 Rroxscaffold_78G00449640 Rroxscaffold_79G00450250 Rroxscaffold_80G00450280 Rroxscaffold_80G00450300 Rroxscaffold_80G00450310 Rroxscaffold_81G00450490 Rroxscaffold_82G00450810 Rroxscaffold_86G00451260 Rroxscaffold_87G00451290 Rroxscaffold_87G00451300 Rroxscaffold_87G00451320 Rroxscaffold_88G00451390 Rroxscaffold_90G00448810 Rroxscaffold_91G00442980 Rroxscaffold_91G00443040 Rroxscaffold_92G00446460 Rroxscaffold_92G00446490 Rroxscaffold_92G00446500 Rroxscaffold_92G00446520 Rroxscaffold_92G00446540 Rroxscaffold_92G00446560 Rroxscaffold_93G00440970 Rroxscaffold_93G00440990 Rroxscaffold_94G00445800 Rroxscaffold_94G00445870 Rroxscaffold_94G00445950 Rroxscaffold_94G00445990 Rroxscaffold_95G00449230 Rroxscaffold_95G00449260 Rroxscaffold_95G00449270 Rroxscaffold_96G00449080 Rroxscaffold_97G00442330 Rroxscaffold_97G00442350 Rroxscaffold_97G00442360 Rroxscaffold_98G00451340 Rroxscaffold_99G00451190 Rroxscaffold_99G00451210

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 103
AccB7I CCANNNNNTGG 2 cut(s) 364, 936
AccBSI CCGCTC 1 cut(s) 525
AccI GTMKAC 1 cut(s) 596
AccII CGCG 5 cut(s) 385, 516, 535, 646, 905
AclWI GGATC 5 cut(s) 164, 177, 412, 425, 854
AcoI YGGCCR 1 cut(s) 541
AcsI RAATTY 1 cut(s) 632
AflII CTTAAG 1 cut(s) 677
AflIII ACRYGT 1 cut(s) 111
AgsI TTSAA 5 cut(s) 89, 590, 637, 829, 910
AjiI CACGTC 1 cut(s) 381
AjnI CCWGG 2 cut(s) 49, 328
AluBI AGCT 4 cut(s) 158, 299, 507, 1051
AluI AGCT 4 cut(s) 158, 299, 507, 1051
Alw21I GWGCWC 5 cut(s) 49, 187, 301, 375, 613
Alw26I GTCTC 1 cut(s) 26
Alw44I GTGCAC 1 cut(s) 183
AlwI GGATC 5 cut(s) 164, 177, 412, 425, 854
AlwNI CAGNNNCTG 1 cut(s) 364
Ama87I CYCGRG 3 cut(s) 209, 428, 502
AoxI GGCC 4 cut(s) 58, 78, 308, 541
ApaLI GTGCAC 1 cut(s) 183
ApeKI GCWGC 4 cut(s) 9, 266, 507, 995
ApoI RAATTY 1 cut(s) 632
Asp700I GAANNNNTTC 1 cut(s) 632
AspLEI GCGC 5 cut(s) 18, 150, 646, 995, 1165
AspS9I GGNCC 6 cut(s) 79, 96, 243, 308, 355, 465
AsuC2I CCSGG 2 cut(s) 545, 582
AsuHPI GGTGA 2 cut(s) 142, 505
AsuNHI GCTAGC 7 cut(s) 1015, 1055, 1097, 1169, 1211, 1246, 1300
AvaI CYCGRG 3 cut(s) 209, 428, 502
AvaII GGWCC 4 cut(s) 96, 243, 355, 465
BaeGI GKGCMC 2 cut(s) 187, 460
BamHI GGATCC 2 cut(s) 169, 417
BanII GRGCYC 3 cut(s) 70, 301, 903
Bbv12I GWGCWC 5 cut(s) 49, 187, 301, 375, 613
BbvI GCAGC 4 cut(s) 21, 253, 494, 1007
BccI CCATC 1 cut(s) 247
BceAI ACGGC 6 cut(s) 3, 73, 274, 352, 670, 710
BciT130I CCWGG 2 cut(s) 51, 330
BcnI CCSGG 2 cut(s) 545, 582
BcoDI GTCTC 1 cut(s) 26
BfoI RGCGCY 1 cut(s) 1166
BfrI CTTAAG 1 cut(s) 677
BglI GCCNNNNNGGC 1 cut(s) 24
BisI GCNGC 8 cut(s) 10, 267, 362, 508, 517, 533, 996, 999
BlpI GCTNAGC 1 cut(s) 340
BlsI GCNGC 8 cut(s) 11, 268, 363, 509, 518, 534, 997, 1000
Bme1390I CCNGG 4 cut(s) 51, 330, 545, 582
Bme18I GGWCC 4 cut(s) 96, 243, 355, 465
BmeT110I CYCGRG 3 cut(s) 209, 428, 502
BmgBI CACGTC 1 cut(s) 381
BmgT120I GGNCC 6 cut(s) 79, 96, 243, 308, 355, 465
BmiI GGNNCC 9 cut(s) 69, 171, 244, 245, 356, 419, 445, 466, 467
BmrFI CCNGG 4 cut(s) 51, 330, 545, 582
BmrI ACTGGG 2 cut(s) 463, 564
BmsI GCATC 3 cut(s) 46, 691, 823
BmtI GCTAGC 7 cut(s) 1019, 1059, 1101, 1173, 1215, 1250, 1304
BmuI ACTGGG 2 cut(s) 463, 564
Bpu1102I GCTNAGC 1 cut(s) 340
BpuMI CCSGG 2 cut(s) 545, 582
BsaXI ACNNNNNCTCC 2 cut(s) 339, 369
Bse118I RCCGGY 1 cut(s) 539
Bse1I ACTGG 2 cut(s) 469, 559
BseBI CCWGG 2 cut(s) 51, 330
BseMII CTCAG 2 cut(s) 354, 614
BseNI ACTGG 2 cut(s) 469, 559
BseSI GKGCMC 2 cut(s) 187, 460
BseX3I CGGCCG 1 cut(s) 541
BseXI GCAGC 4 cut(s) 21, 253, 494, 1007
BseYI CCCAGC 1 cut(s) 453
Bsh1236I CGCG 5 cut(s) 385, 516, 535, 646, 905
Bsh1285I CGRYCG 2 cut(s) 195, 544
BshFI GGCC 4 cut(s) 60, 80, 310, 543
BsiEI CGRYCG 2 cut(s) 195, 544
BsiHKAI GWGCWC 5 cut(s) 49, 187, 301, 375, 613
BsiHKCI CYCGRG 3 cut(s) 209, 428, 502
BsiSI CCGG 5 cut(s) 345, 394, 540, 544, 582
BslFI GGGAC 4 cut(s) 256, 451, 457, 561
BsmAI GTCTC 1 cut(s) 26
BsmBI CGTCTC 1 cut(s) 26
BsmFI GGGAC 4 cut(s) 256, 451, 457, 561
BsmI GAATGC 1 cut(s) 701
BsnI GGCC 4 cut(s) 60, 80, 310, 543
BsoBI CYCGRG 3 cut(s) 209, 428, 502
Bsp1286I GDGCHC 8 cut(s) 49, 70, 187, 301, 375, 460, 613, 903
Bsp143I GATC 4 cut(s) 169, 202, 417, 859
Bsp1720I GCTNAGC 1 cut(s) 340
BspANI GGCC 4 cut(s) 60, 80, 310, 543
BspCNI CTCAG 2 cut(s) 353, 613
BspFNI CGCG 5 cut(s) 385, 516, 535, 646, 905
BspHI TCATGA 1 cut(s) 874
BspLI GGNNCC 9 cut(s) 69, 171, 244, 245, 356, 419, 445, 466, 467
BspOI GCTAGC 7 cut(s) 1019, 1059, 1101, 1173, 1215, 1250, 1304
BspPI GGATC 5 cut(s) 164, 177, 412, 425, 854
BspQI GCTCTTC 1 cut(s) 363
BspTI CTTAAG 1 cut(s) 677
BsrBI CCGCTC 1 cut(s) 525
BsrFI RCCGGY 1 cut(s) 539
BsrI ACTGG 2 cut(s) 469, 559
BssAI RCCGGY 1 cut(s) 539
BssMI GATC 4 cut(s) 169, 202, 417, 859
Bst2UI CCWGG 2 cut(s) 51, 330
Bst4CI ACNGT 2 cut(s) 594, 608
Bst6I CTCTTC 1 cut(s) 363
BstAFI CTTAAG 1 cut(s) 677
BstDEI CTNAG 2 cut(s) 340, 600
BstDSI CCRYGG 2 cut(s) 514, 726
BstENI CCTNNNNNAGG 1 cut(s) 749
BstFNI CGCG 5 cut(s) 385, 516, 535, 646, 905
BstH2I RGCGCY 1 cut(s) 1166
BstHHI GCGC 5 cut(s) 18, 150, 646, 995, 1165
BstKTI GATC 4 cut(s) 172, 205, 420, 862
BstMAI GTCTC 1 cut(s) 26
BstMBI GATC 4 cut(s) 169, 202, 417, 859
BstMCI CGRYCG 2 cut(s) 195, 544
BstNI CCWGG 2 cut(s) 51, 330
BstNSI RCATGY 3 cut(s) 16, 115, 235
BstSCI CCNGG 4 cut(s) 49, 328, 543, 580
BstSLI GKGCMC 2 cut(s) 187, 460
BstUI CGCG 5 cut(s) 385, 516, 535, 646, 905
BstV1I GCAGC 4 cut(s) 21, 253, 494, 1007
BstX2I RGATCY 2 cut(s) 169, 417
BstXI CCANNNNNNTGG 4 cut(s) 989, 1083, 1197, 1328
BstYI RGATCY 2 cut(s) 169, 417
BstZI CGGCCG 1 cut(s) 541
BsuRI GGCC 4 cut(s) 60, 80, 310, 543
BtgI CCRYGG 2 cut(s) 514, 726
BtgZI GCGATG 1 cut(s) 714
BtrI CACGTC 1 cut(s) 381
CaiI CAGNNNCTG 1 cut(s) 364
CciI TCATGA 1 cut(s) 874
CfoI GCGC 5 cut(s) 18, 150, 646, 995, 1165
Cfr10I RCCGGY 1 cut(s) 539
Cfr13I GGNCC 6 cut(s) 79, 96, 243, 308, 355, 465
Cfr42I CCGCGG 1 cut(s) 517
CseI GACGC 2 cut(s) 691, 825
CviAII CATG 4 cut(s) 13, 112, 232, 875
DdeI CTNAG 2 cut(s) 340, 600
DpnI GATC 4 cut(s) 171, 204, 419, 861
DpnII GATC 4 cut(s) 169, 202, 417, 859
DrdI GACNNNNNNGTC 1 cut(s) 103
DseDI GACNNNNNNGTC 1 cut(s) 103
EaeI YGGCCR 1 cut(s) 541
EagI CGGCCG 1 cut(s) 541
Eam1104I CTCTTC 1 cut(s) 363
EarI CTCTTC 1 cut(s) 363
Ecl136II GAGCTC 1 cut(s) 299
EclXI CGGCCG 1 cut(s) 541
Eco24I GRGCYC 3 cut(s) 70, 301, 903
Eco47I GGWCC 4 cut(s) 96, 243, 355, 465
Eco52I CGGCCG 1 cut(s) 541
Eco53kI GAGCTC 1 cut(s) 299
Eco88I CYCGRG 3 cut(s) 209, 428, 502
EcoICRI GAGCTC 1 cut(s) 299
EcoNI CCTNNNNNAGG 1 cut(s) 749
EcoO109I RGGNCCY 2 cut(s) 243, 465
EcoRII CCWGG 2 cut(s) 49, 328
EcoT38I GRGCYC 3 cut(s) 70, 301, 903
Esp3I CGTCTC 1 cut(s) 26
FaeI CATG 4 cut(s) 16, 115, 235, 878
FaiI YATR 7 cut(s) 14, 113, 233, 669, 823, 876, 917
FalI AAGNNNNNCTT 2 cut(s) 1035, 1067
FaqI GGGAC 4 cut(s) 256, 451, 457, 561
FatI CATG 4 cut(s) 12, 111, 231, 874
FauI CCCGC 7 cut(s) 57, 159, 172, 518, 639, 650, 910
FblI GTMKAC 1 cut(s) 596
Fnu4HI GCNGC 8 cut(s) 10, 267, 362, 508, 517, 533, 996, 999
FriOI GRGCYC 3 cut(s) 70, 301, 903
Fsp4HI GCNGC 8 cut(s) 10, 267, 362, 508, 517, 533, 996, 999
GlaI GCGC 5 cut(s) 17, 149, 645, 994, 1164
GluI GCNGC 8 cut(s) 10, 267, 362, 508, 517, 533, 996, 999
GsaI CCCAGC 1 cut(s) 457
HaeII RGCGCY 1 cut(s) 1166
HaeIII GGCC 4 cut(s) 60, 80, 310, 543
HapII CCGG 5 cut(s) 345, 394, 540, 544, 582
HgaI GACGC 2 cut(s) 691, 825
HhaI GCGC 5 cut(s) 18, 150, 646, 995, 1165
Hin1II CATG 4 cut(s) 16, 115, 235, 878
Hin6I GCGC 5 cut(s) 16, 148, 644, 993, 1163
HinP1I GCGC 5 cut(s) 16, 148, 644, 993, 1163
HincII GTYRAC 2 cut(s) 125, 597
HindII GTYRAC 2 cut(s) 125, 597
HindIII AAGCTT 1 cut(s) 1049
HinfI GANTC 6 cut(s) 104, 121, 290, 598, 671, 878
HpaII CCGG 5 cut(s) 345, 394, 540, 544, 582
HphI GGTGA 2 cut(s) 142, 505
Hpy166II GTNNAC 5 cut(s) 125, 185, 496, 597, 652
Hpy188I TCNGA 4 cut(s) 109, 448, 603, 615
Hpy188III TCNNGA 8 cut(s) 86, 209, 211, 241, 294, 430, 474, 875
Hpy8I GTNNAC 5 cut(s) 125, 185, 496, 597, 652
Hpy99I CGWCG 4 cut(s) 385, 486, 841, 868
HpyAV CCTTC 4 cut(s) 208, 576, 745, 904
HpyCH4III ACNGT 2 cut(s) 594, 608
HpyCH4IV ACGT 1 cut(s) 380
HpyF3I CTNAG 2 cut(s) 340, 600
HpySE526I ACGT 1 cut(s) 380
Hsp92II CATG 4 cut(s) 16, 115, 235, 878
HspAI GCGC 5 cut(s) 16, 148, 644, 993, 1163
KflI GGGWCCC 2 cut(s) 243, 465
KroI GCCGGC 1 cut(s) 539
KroNI GCCGGC 1 cut(s) 541
KspI CCGCGG 1 cut(s) 517
Kzo9I GATC 4 cut(s) 169, 202, 417, 859
LguI GCTCTTC 1 cut(s) 363
LmnI GCTCC 5 cut(s) 52, 73, 304, 449, 568
Lsp1109I GCAGC 4 cut(s) 21, 253, 494, 1007
LweI GCATC 3 cut(s) 46, 691, 823
MaeII ACGT 1 cut(s) 380
MaeIII GTNAC 3 cut(s) 53, 422, 662
MalI GATC 4 cut(s) 171, 204, 419, 861
MbiI CCGCTC 1 cut(s) 525
MboI GATC 4 cut(s) 169, 202, 417, 859
MboII GAAGA 3 cut(s) 197, 380, 640
MflI RGATCY 2 cut(s) 169, 417
MhlI GDGCHC 8 cut(s) 49, 70, 187, 301, 375, 460, 613, 903
MluCI AATT 1 cut(s) 632
MlyI GAGTC 4 cut(s) 113, 130, 592, 665
MmeI TCCRAC 1 cut(s) 132
MroNI GCCGGC 1 cut(s) 539
MroXI GAANNNNTTC 1 cut(s) 632
MseI TTAA 2 cut(s) 135, 678
MslI CAYNNNNRTG 1 cut(s) 42
MspA1I CMGCKG 3 cut(s) 361, 516, 998
MspCI CTTAAG 1 cut(s) 677
MspI CCGG 5 cut(s) 345, 394, 540, 544, 582
MspR9I CCNGG 4 cut(s) 51, 330, 545, 582
Mva1269I GAATGC 1 cut(s) 701
MvaI CCWGG 2 cut(s) 51, 330
MvnI CGCG 5 cut(s) 385, 516, 535, 646, 905
NaeI GCCGGC 1 cut(s) 541
NciI CCSGG 2 cut(s) 545, 582
NdeII GATC 4 cut(s) 169, 202, 417, 859
NgoMIV GCCGGC 1 cut(s) 539
NheI GCTAGC 7 cut(s) 1015, 1055, 1097, 1169, 1211, 1246, 1300
NlaIII CATG 4 cut(s) 16, 115, 235, 878
NlaIV GGNNCC 9 cut(s) 69, 171, 244, 245, 356, 419, 445, 466, 467
NmeAIII GCCGAG 1 cut(s) 792
NspI RCATGY 3 cut(s) 16, 115, 235
PaeI GCATGC 2 cut(s) 16, 235
PaeR7I CTCGAG 2 cut(s) 209, 502
PagI TCATGA 1 cut(s) 874
PciI ACATGT 1 cut(s) 111
PciSI GCTCTTC 1 cut(s) 363
PcsI WCGNNNNNNNCGW 1 cut(s) 40
PctI GAATGC 1 cut(s) 701
PdiI GCCGGC 1 cut(s) 541
PdmI GAANNNNTTC 1 cut(s) 632
PfeI GAWTC 2 cut(s) 290, 878
PflMI CCANNNNNTGG 2 cut(s) 364, 936
PkrI GCNGC 8 cut(s) 11, 268, 363, 509, 518, 534, 997, 1000
PleI GAGTC 4 cut(s) 112, 129, 592, 665
PpsI GAGTC 4 cut(s) 112, 129, 592, 665
PpuMI RGGWCCY 2 cut(s) 243, 465
PscI ACATGT 1 cut(s) 111
Psp124BI GAGCTC 1 cut(s) 301
Psp5II RGGWCCY 2 cut(s) 243, 465
Psp6I CCWGG 2 cut(s) 49, 328
PspFI CCCAGC 1 cut(s) 453
PspGI CCWGG 2 cut(s) 49, 328
PspN4I GGNNCC 9 cut(s) 69, 171, 244, 245, 356, 419, 445, 466, 467
PspPI GGNCC 6 cut(s) 79, 96, 243, 308, 355, 465
PspPPI RGGWCCY 2 cut(s) 243, 465
PspXI VCTCGAGB 1 cut(s) 502
PstNI CAGNNNCTG 1 cut(s) 364
PsuI RGATCY 2 cut(s) 169, 417
RseI CAYNNNNRTG 1 cut(s) 42
SacI GAGCTC 1 cut(s) 301
SacII CCGCGG 1 cut(s) 517
SalI GTCGAC 1 cut(s) 595
SapI GCTCTTC 1 cut(s) 363
SaqAI TTAA 2 cut(s) 135, 678
SatI GCNGC 8 cut(s) 10, 267, 362, 508, 517, 533, 996, 999
Sau3AI GATC 4 cut(s) 169, 202, 417, 859
Sau96I GGNCC 6 cut(s) 79, 96, 243, 308, 355, 465
SchI GAGTC 4 cut(s) 113, 130, 592, 665
ScrFI CCNGG 4 cut(s) 51, 330, 545, 582
SduI GDGCHC 8 cut(s) 49, 70, 187, 301, 375, 460, 613, 903
SetI ASST 8 cut(s) 160, 201, 301, 352, 383, 429, 509, 1053
SfaNI GCATC 3 cut(s) 46, 691, 823
Sfr274I CTCGAG 2 cut(s) 209, 502
Sfr303I CCGCGG 1 cut(s) 517
SgrBI CCGCGG 1 cut(s) 517
SinI GGWCC 4 cut(s) 96, 243, 355, 465
SlaI CTCGAG 2 cut(s) 209, 502
SmiMI CAYNNNNRTG 1 cut(s) 42
SmlI CTYRAG 3 cut(s) 209, 502, 677
SmoI CTYRAG 3 cut(s) 209, 502, 677
SphI GCATGC 2 cut(s) 16, 235
Sse9I AATT 1 cut(s) 632
SstI GAGCTC 1 cut(s) 301
StyD4I CCNGG 4 cut(s) 49, 328, 543, 580
TaaI ACNGT 2 cut(s) 594, 608
TaiI ACGT 1 cut(s) 383
TaqI TCGA 6 cut(s) 210, 221, 293, 503, 596, 866
TaqII GACCGA 1 cut(s) 209
TasI AATT 1 cut(s) 632
TauI GCSGC 4 cut(s) 364, 519, 535, 1001
TfiI GAWTC 2 cut(s) 290, 878
Tru1I TTAA 2 cut(s) 135, 678
Tru9I TTAA 2 cut(s) 135, 678
TseI GCWGC 4 cut(s) 9, 266, 507, 995
TspDTI ATGAA 3 cut(s) 891, 1125, 1239
TspGWI ACGGA 4 cut(s) 109, 410, 565, 852
Van91I CCANNNNNTGG 2 cut(s) 364, 936
Vha464I CTTAAG 1 cut(s) 677
VneI GTGCAC 1 cut(s) 183
VpaK11BI GGWCC 4 cut(s) 96, 243, 355, 465
XagI CCTNNNNNAGG 1 cut(s) 749
XapI RAATTY 1 cut(s) 632
XceI RCATGY 3 cut(s) 16, 115, 235
XhoI CTCGAG 2 cut(s) 209, 502
XmiI GTMKAC 1 cut(s) 596
XmnI GAANNNNTTC 1 cut(s) 632
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.