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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 2 cut(s) | 234, 242 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 202 |
| AccBSI | CCGCTC | 1 cut(s) | 56 |
| AccII | CGCG | 2 cut(s) | 16, 223 |
| AccIII | TCCGGA | 1 cut(s) | 256 |
| AciI | CCGC | 7 cut(s) | 16, 19, 51, 56, 199, 214, 298 |
| AcoI | YGGCCR | 1 cut(s) | 57 |
| AcyI | GRCGYC | 2 cut(s) | 235, 243 |
| AfaI | GTAC | 1 cut(s) | 289 |
| AfiI | CCNNNNNNNGG | 4 cut(s) | 121, 173, 189, 202 |
| AgsI | TTSAA | 3 cut(s) | 96, 110, 251 |
| AjiI | CACGTC | 1 cut(s) | 219 |
| Alw21I | GWGCWC | 1 cut(s) | 213 |
| Alw26I | GTCTC | 1 cut(s) | 312 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 202 |
| Ama87I | CYCGRG | 1 cut(s) | 34 |
| Aor13HI | TCCGGA | 1 cut(s) | 256 |
| AoxI | GGCC | 3 cut(s) | 57, 112, 155 |
| ApeKI | GCWGC | 1 cut(s) | 25 |
| AspLEI | GCGC | 3 cut(s) | 16, 237, 245 |
| AspS9I | GGNCC | 2 cut(s) | 193, 262 |
| AsuC2I | CCSGG | 6 cut(s) | 35, 36, 48, 168, 240, 282 |
| AvaI | CYCGRG | 1 cut(s) | 34 |
| AvaII | GGWCC | 2 cut(s) | 193, 262 |
| BanI | GGYRCC | 2 cut(s) | 234, 242 |
| BanII | GRGCYC | 1 cut(s) | 48 |
| Bbv12I | GWGCWC | 1 cut(s) | 213 |
| BbvI | GCAGC | 1 cut(s) | 12 |
| BceAI | ACGGC | 3 cut(s) | 44, 157, 190 |
| BcnI | CCSGG | 6 cut(s) | 35, 36, 48, 168, 240, 282 |
| BcoDI | GTCTC | 1 cut(s) | 312 |
| BfoI | RGCGCY | 2 cut(s) | 238, 246 |
| BglII | AGATCT | 1 cut(s) | 70 |
| BisI | GCNGC | 4 cut(s) | 17, 26, 57, 200 |
| BlpI | GCTNAGC | 1 cut(s) | 178 |
| BlsI | GCNGC | 4 cut(s) | 18, 27, 58, 201 |
| Bme1390I | CCNGG | 6 cut(s) | 35, 36, 48, 168, 240, 282 |
| Bme18I | GGWCC | 2 cut(s) | 193, 262 |
| BmeT110I | CYCGRG | 1 cut(s) | 34 |
| BmgBI | CACGTC | 1 cut(s) | 219 |
| BmgT120I | GGNCC | 2 cut(s) | 193, 262 |
| BmiI | GGNNCC | 4 cut(s) | 131, 194, 236, 244 |
| BmrFI | CCNGG | 6 cut(s) | 35, 36, 48, 168, 240, 282 |
| BmsI | GCATC | 1 cut(s) | 309 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 178 |
| BpuMI | CCSGG | 6 cut(s) | 35, 36, 48, 168, 240, 282 |
| BsaHI | GRCGYC | 2 cut(s) | 235, 243 |
| BsaI | GGTCTC | 1 cut(s) | 312 |
| BsaJI | CCNNGG | 5 cut(s) | 34, 35, 166, 238, 311 |
| BsaWI | WCCGGW | 1 cut(s) | 256 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 45, 75, 177, 207 |
| Bsc4I | CCNNNNNNNGG | 4 cut(s) | 121, 173, 189, 202 |
| BseAI | TCCGGA | 1 cut(s) | 256 |
| BseDI | CCNNGG | 5 cut(s) | 34, 35, 166, 238, 311 |
| BseLI | CCNNNNNNNGG | 4 cut(s) | 121, 173, 189, 202 |
| BseMII | CTCAG | 1 cut(s) | 192 |
| BseX3I | CGGCCG | 1 cut(s) | 57 |
| BseXI | GCAGC | 1 cut(s) | 12 |
| BsgI | GTGCAG | 1 cut(s) | 87 |
| Bsh1236I | CGCG | 2 cut(s) | 16, 223 |
| Bsh1285I | CGRYCG | 3 cut(s) | 23, 60, 286 |
| BshFI | GGCC | 3 cut(s) | 59, 114, 157 |
| BshNI | GGYRCC | 2 cut(s) | 234, 242 |
| BsiEI | CGRYCG | 3 cut(s) | 23, 60, 286 |
| BsiHKAI | GWGCWC | 1 cut(s) | 213 |
| BsiHKCI | CYCGRG | 1 cut(s) | 34 |
| BsiSI | CCGG | 8 cut(s) | 35, 48, 168, 183, 232, 240, 257, 282 |
| BslI | CCNNNNNNNGG | 4 cut(s) | 121, 173, 189, 202 |
| BsmAI | GTCTC | 1 cut(s) | 312 |
| BsnI | GGCC | 3 cut(s) | 59, 114, 157 |
| Bso31I | GGTCTC | 1 cut(s) | 312 |
| BsoBI | CYCGRG | 1 cut(s) | 34 |
| Bsp1286I | GDGCHC | 2 cut(s) | 48, 213 |
| Bsp13I | TCCGGA | 1 cut(s) | 256 |
| Bsp143I | GATC | 1 cut(s) | 70 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 178 |
| BspACI | CCGC | 7 cut(s) | 16, 19, 51, 56, 199, 214, 298 |
| BspANI | GGCC | 3 cut(s) | 59, 114, 157 |
| BspCNI | CTCAG | 1 cut(s) | 191 |
| BspEI | TCCGGA | 1 cut(s) | 256 |
| BspFNI | CGCG | 2 cut(s) | 16, 223 |
| BspLI | GGNNCC | 4 cut(s) | 131, 194, 236, 244 |
| BspQI | GCTCTTC | 1 cut(s) | 201 |
| BspT107I | GGYRCC | 2 cut(s) | 234, 242 |
| BspTNI | GGTCTC | 1 cut(s) | 312 |
| BsrBI | CCGCTC | 1 cut(s) | 56 |
| BssECI | CCNNGG | 5 cut(s) | 34, 35, 166, 238, 311 |
| BssMI | GATC | 1 cut(s) | 70 |
| BssNI | GRCGYC | 2 cut(s) | 235, 243 |
| BssT1I | CCWWGG | 1 cut(s) | 311 |
| Bst6I | CTCTTC | 2 cut(s) | 112, 201 |
| BstACI | GRCGYC | 2 cut(s) | 235, 243 |
| BstC8I | GCNNGC | 1 cut(s) | 159 |
| BstDEI | CTNAG | 1 cut(s) | 178 |
| BstFNI | CGCG | 2 cut(s) | 16, 223 |
| BstH2I | RGCGCY | 2 cut(s) | 238, 246 |
| BstHHI | GCGC | 3 cut(s) | 16, 237, 245 |
| BstKTI | GATC | 1 cut(s) | 73 |
| BstMAI | GTCTC | 1 cut(s) | 312 |
| BstMBI | GATC | 1 cut(s) | 70 |
| BstMCI | CGRYCG | 3 cut(s) | 23, 60, 286 |
| BstMWI | GCNNNNNNNGC | 5 cut(s) | 22, 25, 65, 208, 277 |
| BstSCI | CCNGG | 6 cut(s) | 33, 34, 46, 166, 238, 280 |
| BstUI | CGCG | 2 cut(s) | 16, 223 |
| BstV1I | GCAGC | 1 cut(s) | 12 |
| BstX2I | RGATCY | 1 cut(s) | 70 |
| BstYI | RGATCY | 1 cut(s) | 70 |
| BstZI | CGGCCG | 1 cut(s) | 57 |
| BsuRI | GGCC | 3 cut(s) | 59, 114, 157 |
| BtrI | CACGTC | 1 cut(s) | 219 |
| Cac8I | GCNNGC | 1 cut(s) | 159 |
| CaiI | CAGNNNCTG | 1 cut(s) | 202 |
| CfoI | GCGC | 3 cut(s) | 16, 237, 245 |
| Cfr13I | GGNCC | 2 cut(s) | 193, 262 |
| Cfr9I | CCCGGG | 1 cut(s) | 34 |
| Csp6I | GTAC | 1 cut(s) | 288 |
| CviAII | CATG | 2 cut(s) | 134, 153 |
| CviJI | RGCY | 7 cut(s) | 46, 59, 114, 157, 177, 182, 202 |
| CviKI_1 | RGCY | 7 cut(s) | 46, 59, 114, 157, 177, 182, 202 |
| CviQI | GTAC | 1 cut(s) | 288 |
| DdeI | CTNAG | 1 cut(s) | 178 |
| DinI | GGCGCC | 2 cut(s) | 236, 244 |
| DpnI | GATC | 1 cut(s) | 72 |
| DpnII | GATC | 1 cut(s) | 70 |
| EaeI | YGGCCR | 1 cut(s) | 57 |
| EagI | CGGCCG | 1 cut(s) | 57 |
| Eam1104I | CTCTTC | 2 cut(s) | 112, 201 |
| EarI | CTCTTC | 2 cut(s) | 112, 201 |
| EciI | GGCGGA | 1 cut(s) | 66 |
| EclXI | CGGCCG | 1 cut(s) | 57 |
| Eco130I | CCWWGG | 1 cut(s) | 311 |
| Eco24I | GRGCYC | 1 cut(s) | 48 |
| Eco31I | GGTCTC | 1 cut(s) | 312 |
| Eco47I | GGWCC | 2 cut(s) | 193, 262 |
| Eco52I | CGGCCG | 1 cut(s) | 57 |
| Eco88I | CYCGRG | 1 cut(s) | 34 |
| EcoT14I | CCWWGG | 1 cut(s) | 311 |
| EcoT38I | GRGCYC | 1 cut(s) | 48 |
| EgeI | GGCGCC | 2 cut(s) | 236, 244 |
| EheI | GGCGCC | 2 cut(s) | 236, 244 |
| ErhI | CCWWGG | 1 cut(s) | 311 |
| FaeI | CATG | 2 cut(s) | 137, 156 |
| FaiI | YATR | 3 cut(s) | 135, 154, 294 |
| FatI | CATG | 2 cut(s) | 133, 152 |
| Fnu4HI | GCNGC | 4 cut(s) | 17, 26, 57, 200 |
| FriOI | GRGCYC | 1 cut(s) | 48 |
| Fsp4HI | GCNGC | 4 cut(s) | 17, 26, 57, 200 |
| GlaI | GCGC | 3 cut(s) | 15, 236, 244 |
| GluI | GCNGC | 4 cut(s) | 17, 26, 57, 200 |
| HaeII | RGCGCY | 2 cut(s) | 238, 246 |
| HaeIII | GGCC | 3 cut(s) | 59, 114, 157 |
| HapII | CCGG | 8 cut(s) | 35, 48, 168, 183, 232, 240, 257, 282 |
| HhaI | GCGC | 3 cut(s) | 16, 237, 245 |
| Hin1I | GRCGYC | 2 cut(s) | 235, 243 |
| Hin1II | CATG | 2 cut(s) | 137, 156 |
| Hin6I | GCGC | 3 cut(s) | 14, 235, 243 |
| HinP1I | GCGC | 3 cut(s) | 14, 235, 243 |
| HpaII | CCGG | 8 cut(s) | 35, 48, 168, 183, 232, 240, 257, 282 |
| Hpy166II | GTNNAC | 1 cut(s) | 139 |
| Hpy188III | TCNNGA | 1 cut(s) | 257 |
| Hpy8I | GTNNAC | 1 cut(s) | 139 |
| Hpy99I | CGWCG | 2 cut(s) | 65, 223 |
| HpyAV | CCTTC | 1 cut(s) | 104 |
| HpyCH4IV | ACGT | 1 cut(s) | 218 |
| HpyCH4V | TGCA | 3 cut(s) | 28, 68, 150 |
| HpyF10VI | GCNNNNNNNGC | 5 cut(s) | 22, 25, 65, 208, 277 |
| HpyF3I | CTNAG | 1 cut(s) | 178 |
| HpySE526I | ACGT | 1 cut(s) | 218 |
| Hsp92I | GRCGYC | 2 cut(s) | 235, 243 |
| Hsp92II | CATG | 2 cut(s) | 137, 156 |
| HspAI | GCGC | 3 cut(s) | 14, 235, 243 |
| KasI | GGCGCC | 2 cut(s) | 234, 242 |
| Kpn2I | TCCGGA | 1 cut(s) | 256 |
| Kzo9I | GATC | 1 cut(s) | 70 |
| LguI | GCTCTTC | 1 cut(s) | 201 |
| LmnI | GCTCC | 1 cut(s) | 53 |
| Lsp1109I | GCAGC | 1 cut(s) | 12 |
| LweI | GCATC | 1 cut(s) | 309 |
| MaeII | ACGT | 1 cut(s) | 218 |
| MalI | GATC | 1 cut(s) | 72 |
| MbiI | CCGCTC | 1 cut(s) | 56 |
| MboI | GATC | 1 cut(s) | 70 |
| MboII | GAAGA | 2 cut(s) | 129, 218 |
| MflI | RGATCY | 1 cut(s) | 70 |
| MhlI | GDGCHC | 2 cut(s) | 48, 213 |
| Mly113I | GGCGCC | 2 cut(s) | 235, 243 |
| MnlI | CCTC | 4 cut(s) | 3, 113, 179, 253 |
| MroI | TCCGGA | 1 cut(s) | 256 |
| MspA1I | CMGCKG | 1 cut(s) | 199 |
| MspI | CCGG | 8 cut(s) | 35, 48, 168, 183, 232, 240, 257, 282 |
| MspR9I | CCNGG | 6 cut(s) | 35, 36, 48, 168, 240, 282 |
| MvnI | CGCG | 2 cut(s) | 16, 223 |
| MwoI | GCNNNNNNNGC | 5 cut(s) | 22, 25, 65, 208, 277 |
| NarI | GGCGCC | 2 cut(s) | 235, 243 |
| NciI | CCSGG | 6 cut(s) | 35, 36, 48, 168, 240, 282 |
| NdeII | GATC | 1 cut(s) | 70 |
| NlaIII | CATG | 2 cut(s) | 137, 156 |
| NlaIV | GGNNCC | 4 cut(s) | 131, 194, 236, 244 |
| PciSI | GCTCTTC | 1 cut(s) | 201 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 202 |
| PkrI | GCNGC | 4 cut(s) | 18, 27, 58, 201 |
| PluTI | GGCGCC | 2 cut(s) | 238, 246 |
| PspN4I | GGNNCC | 4 cut(s) | 131, 194, 236, 244 |
| PspPI | GGNCC | 2 cut(s) | 193, 262 |
| PstNI | CAGNNNCTG | 1 cut(s) | 202 |
| PsuI | RGATCY | 1 cut(s) | 70 |
| RsaI | GTAC | 1 cut(s) | 289 |
| RsaNI | GTAC | 1 cut(s) | 288 |
| SapI | GCTCTTC | 1 cut(s) | 201 |
| SatI | GCNGC | 4 cut(s) | 17, 26, 57, 200 |
| Sau3AI | GATC | 1 cut(s) | 70 |
| Sau96I | GGNCC | 2 cut(s) | 193, 262 |
| ScrFI | CCNGG | 6 cut(s) | 35, 36, 48, 168, 240, 282 |
| SduI | GDGCHC | 2 cut(s) | 48, 213 |
| SetI | ASST | 5 cut(s) | 131, 190, 221, 308, 317 |
| SfaNI | GCATC | 1 cut(s) | 309 |
| SfoI | GGCGCC | 2 cut(s) | 236, 244 |
| SinI | GGWCC | 2 cut(s) | 193, 262 |
| SmaI | CCCGGG | 1 cut(s) | 36 |
| SsiI | CCGC | 7 cut(s) | 16, 19, 51, 56, 199, 214, 298 |
| SspDI | GGCGCC | 2 cut(s) | 234, 242 |
| SspI | AATATT | 1 cut(s) | 92 |
| StyD4I | CCNGG | 6 cut(s) | 33, 34, 46, 166, 238, 280 |
| StyI | CCWWGG | 1 cut(s) | 311 |
| TaiI | ACGT | 1 cut(s) | 221 |
| TaqII | GACCGA | 1 cut(s) | 279 |
| TauI | GCSGC | 3 cut(s) | 19, 59, 202 |
| TseI | GCWGC | 1 cut(s) | 25 |
| TspMI | CCCGGG | 1 cut(s) | 34 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 202 |
| VpaK11BI | GGWCC | 2 cut(s) | 193, 262 |
| XmaI | CCCGGG | 1 cut(s) | 34 |