Rroxscaffold_94G00445800

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000094
OG0000104
Physical Location & Seq
Forward (+)
4776 .. 5778
1003 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_94G00445800.1

Sequence Viewer

Length: 540 bp
ATGCGGGATGAACCGAAGAAGCCGGGTTACGGTGCCCGACTACGCGCTAACCTAGAACCCACAAAGGGTGTTGGTCGATTAAGACAGCAGGACGGTGGTCATGGAAGTCGAAATCCGCTAAGGAGTGTCCTGCCCACCCTGGAAACGGCTCAGCCGGAGGTAGGGTCCAGCGGCTGGAAGAGCACCGCACGTCGCGTGGTGTCCGGTGCGCCCCCGGCGGCCCTTGAAAATCCGGAGGACCGAGTGCCATTCACGCCGGTCGTACTCATAACCGCATCAGGTCTCCAAGGCAAGGGAAGTCGGCAAAATGGATCCGTAACCTCGGGAAAAGGGATTGGCTCTGAGGGCTGGGCACGGGGGTCCCGATCCCGAACCCGTCGGCTGTCGGTGAACTGCTCGAGCTGCTTCCGCGCGCGAGAGCGGGTCGCCGCGTGCCGGCCGGGGACGGACTGGGAACGCTCTTTCGGGGGCTTTTTCCCCGGGCGTTCAACAGTCGACTCAGAACTGGTACGGACAAGGGGAATCCGACTGTTTAATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

179

Amino Acids

19.3

Weight (kDa)

11.43

Isoelectric Point (pI)

55.94

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000104)

Species Orthologous Gene IDs
pyrus_communis pycom2246g00050 pycom2246g00060 pycom2246g00070 pycom2246g00100 pycom2246g00170 pycom2575g00020 pycom520g01350
rosa_roxburghii Rroxscaffold_102G00450880 Rroxscaffold_102G00450940 Rroxscaffold_103G00450570 Rroxscaffold_104G00444660 Rroxscaffold_104G00444710 Rroxscaffold_104G00444740 Rroxscaffold_104G00444800 Rroxscaffold_104G00444860 Rroxscaffold_105G00447090 Rroxscaffold_105G00447190 Rroxscaffold_105G00447230 Rroxscaffold_106G00451430 Rroxscaffold_107G00442440 Rroxscaffold_107G00442550 Rroxscaffold_107G00442640 Rroxscaffold_107G00442690 Rroxscaffold_111G00451560 Rroxscaffold_112G00451580 Rroxscaffold_113G00451620 Rroxscaffold_115G00451690 Rroxscaffold_118G00451780 Rroxscaffold_122G00451870 Rroxscaffold_123G00451910 Rroxscaffold_124G00451960 Rroxscaffold_128G00452050 Rroxscaffold_12G00450640 Rroxscaffold_131G00452100 Rroxscaffold_132G00452130 Rroxscaffold_138G00452190 Rroxscaffold_13G00448670 Rroxscaffold_14G00441890 Rroxscaffold_14G00441960 Rroxscaffold_14G00442010 Rroxscaffold_14G00442070 Rroxscaffold_15G00447460 Rroxscaffold_15G00447510 Rroxscaffold_15G00447580 Rroxscaffold_162G00450750 Rroxscaffold_17G00435460 Rroxscaffold_17G00435510 Rroxscaffold_17G00435570 Rroxscaffold_17G00435640 Rroxscaffold_17G00435910 Rroxscaffold_18G00446090 Rroxscaffold_18G00446110 Rroxscaffold_18G00446170 Rroxscaffold_19G00448930 Rroxscaffold_1G00000010 Rroxscaffold_1G00000090 Rroxscaffold_1G00000130 Rroxscaffold_20G00445030 Rroxscaffold_20G00445040 Rroxscaffold_20G00445070 Rroxscaffold_20G00445110 Rroxscaffold_21G00439440 Rroxscaffold_21G00439460 Rroxscaffold_21G00439470 Rroxscaffold_21G00439520 Rroxscaffold_21G00439570 Rroxscaffold_21G00439660 Rroxscaffold_22G00439850 Rroxscaffold_22G00439990 Rroxscaffold_22G00440030 Rroxscaffold_25G00450140 Rroxscaffold_25G00450170 Rroxscaffold_26G00447770 Rroxscaffold_27G00446650 Rroxscaffold_29G00441730 Rroxscaffold_29G00441740 Rroxscaffold_29G00441760 Rroxscaffold_29G00441780 Rroxscaffold_29G00441830 Rroxscaffold_29G00441870 Rroxscaffold_30G00449490 Rroxscaffold_30G00449510 Rroxscaffold_31G00438130 Rroxscaffold_31G00438170 Rroxscaffold_31G00438270 Rroxscaffold_32G00442790 Rroxscaffold_32G00442800 Rroxscaffold_32G00442840 Rroxscaffold_33G00439700 Rroxscaffold_33G00439710 Rroxscaffold_34G00443170 Rroxscaffold_34G00443210 Rroxscaffold_34G00443280 Rroxscaffold_34G00443310 Rroxscaffold_35G00441010 Rroxscaffold_35G00441120 Rroxscaffold_35G00441180 Rroxscaffold_35G00441260 Rroxscaffold_35G00441290 Rroxscaffold_36G00440070 Rroxscaffold_36G00440110 Rroxscaffold_36G00440140 Rroxscaffold_36G00440190 Rroxscaffold_37G00445180 Rroxscaffold_37G00445190 Rroxscaffold_37G00445230 Rroxscaffold_37G00445240 Rroxscaffold_37G00445270 Rroxscaffold_38G00444450 Rroxscaffold_38G00444530 Rroxscaffold_38G00444570 Rroxscaffold_38G00444600 Rroxscaffold_38G00444620 Rroxscaffold_39G00448260 Rroxscaffold_40G00447720 Rroxscaffold_43G00449810 Rroxscaffold_43G00449840 Rroxscaffold_43G00449900 Rroxscaffold_44G00440460 Rroxscaffold_44G00440470 Rroxscaffold_44G00440510 Rroxscaffold_44G00440600 Rroxscaffold_44G00440640 Rroxscaffold_45G00438810 Rroxscaffold_45G00438840 Rroxscaffold_45G00438870 Rroxscaffold_45G00438890 Rroxscaffold_45G00438980 Rroxscaffold_46G00448720 Rroxscaffold_46G00448740 Rroxscaffold_47G00443950 Rroxscaffold_47G00443980 Rroxscaffold_47G00444000 Rroxscaffold_47G00444090 Rroxscaffold_48G00448430 Rroxscaffold_48G00448470 Rroxscaffold_48G00448510 Rroxscaffold_49G00438600 Rroxscaffold_49G00438620 Rroxscaffold_49G00438680 Rroxscaffold_49G00438710 Rroxscaffold_49G00438740 Rroxscaffold_49G00438780 Rroxscaffold_50G00444160 Rroxscaffold_50G00444260 Rroxscaffold_50G00444290 Rroxscaffold_50G00444370 Rroxscaffold_50G00444400 Rroxscaffold_53G00449700 Rroxscaffold_53G00449730 Rroxscaffold_53G00449740 Rroxscaffold_54G00443410 Rroxscaffold_54G00443460 Rroxscaffold_54G00443490 Rroxscaffold_54G00443530 Rroxscaffold_54G00443580 Rroxscaffold_54G00443610 Rroxscaffold_54G00443670 Rroxscaffold_55G00450070 Rroxscaffold_55G00450130 Rroxscaffold_56G00450950 Rroxscaffold_58G00449000 Rroxscaffold_58G00449050 Rroxscaffold_59G00442150 Rroxscaffold_59G00442180 Rroxscaffold_59G00442250 Rroxscaffold_59G00442270 Rroxscaffold_59G00442280 Rroxscaffold_60G00448270 Rroxscaffold_60G00448290 Rroxscaffold_60G00448330 Rroxscaffold_60G00448400 Rroxscaffold_61G00449970 Rroxscaffold_62G00437930 Rroxscaffold_62G00438030 Rroxscaffold_64G00450690 Rroxscaffold_64G00450700 Rroxscaffold_65G00445280 Rroxscaffold_65G00445350 Rroxscaffold_65G00445390 Rroxscaffold_66G00437570 Rroxscaffold_66G00437600 Rroxscaffold_66G00437620 Rroxscaffold_66G00437690 Rroxscaffold_66G00437730 Rroxscaffold_66G00437770 Rroxscaffold_66G00437860 Rroxscaffold_68G00447000 Rroxscaffold_68G00447040 Rroxscaffold_69G00446680 Rroxscaffold_69G00446780 Rroxscaffold_69G00446790 Rroxscaffold_69G00446810 Rroxscaffold_6G00387760 Rroxscaffold_6G00387790 Rroxscaffold_6G00387830 Rroxscaffold_6G00387840 Rroxscaffold_70G00446290 Rroxscaffold_70G00446390 Rroxscaffold_71G00445730 Rroxscaffold_71G00445750 Rroxscaffold_72G00449340 Rroxscaffold_72G00449380 Rroxscaffold_73G00439090 Rroxscaffold_73G00439120 Rroxscaffold_73G00439190 Rroxscaffold_73G00439210 Rroxscaffold_73G00439250 Rroxscaffold_74G00442890 Rroxscaffold_74G00442960 Rroxscaffold_75G00447280 Rroxscaffold_75G00447300 Rroxscaffold_75G00447340 Rroxscaffold_75G00447390 Rroxscaffold_75G00447410 Rroxscaffold_75G00447440 Rroxscaffold_76G00448590 Rroxscaffold_78G00449630 Rroxscaffold_78G00449640 Rroxscaffold_79G00450250 Rroxscaffold_80G00450280 Rroxscaffold_80G00450300 Rroxscaffold_80G00450310 Rroxscaffold_81G00450490 Rroxscaffold_82G00450810 Rroxscaffold_86G00451260 Rroxscaffold_87G00451290 Rroxscaffold_87G00451300 Rroxscaffold_87G00451320 Rroxscaffold_88G00451390 Rroxscaffold_90G00448810 Rroxscaffold_91G00442980 Rroxscaffold_91G00443040 Rroxscaffold_92G00446460 Rroxscaffold_92G00446490 Rroxscaffold_92G00446500 Rroxscaffold_92G00446520 Rroxscaffold_92G00446540 Rroxscaffold_92G00446560 Rroxscaffold_93G00440970 Rroxscaffold_93G00440990 Rroxscaffold_94G00445800 Rroxscaffold_94G00445870 Rroxscaffold_94G00445950 Rroxscaffold_94G00445990 Rroxscaffold_95G00449230 Rroxscaffold_95G00449260 Rroxscaffold_95G00449270 Rroxscaffold_96G00449080 Rroxscaffold_97G00442330 Rroxscaffold_97G00442350 Rroxscaffold_97G00442360 Rroxscaffold_98G00451340 Rroxscaffold_99G00451190 Rroxscaffold_99G00451210

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 32
AccB7I CCANNNNNTGG 1 cut(s) 174
AccBSI CCGCTC 1 cut(s) 421
AccI GTMKAC 1 cut(s) 495
AccII CGCG 6 cut(s) 45, 195, 411, 413, 415, 431
AccIII TCCGGA 1 cut(s) 232
AciI CCGC 9 cut(s) 4, 116, 171, 186, 218, 273, 409, 421, 429
AclWI GGATC 3 cut(s) 306, 319, 360
AcoI YGGCCR 1 cut(s) 437
AfaI GTAC 2 cut(s) 264, 510
AfiI CCNNNNNNNGG 7 cut(s) 29, 65, 145, 161, 174, 292, 435
AgsI TTSAA 2 cut(s) 227, 489
AjiI CACGTC 1 cut(s) 191
AjnI CCWGG 1 cut(s) 138
AluBI AGCT 1 cut(s) 402
AluI AGCT 1 cut(s) 402
Alw21I GWGCWC 1 cut(s) 185
Alw26I GTCTC 1 cut(s) 287
AlwI GGATC 3 cut(s) 306, 319, 360
AlwNI CAGNNNCTG 1 cut(s) 174
Ama87I CYCGRG 3 cut(s) 322, 397, 479
Aor13HI TCCGGA 1 cut(s) 232
AoxI GGCC 2 cut(s) 219, 437
ApeKI GCWGC 1 cut(s) 402
AspLEI GCGC 4 cut(s) 47, 211, 413, 415
AspS9I GGNCC 4 cut(s) 165, 220, 238, 360
AsuC2I CCSGG 5 cut(s) 24, 215, 441, 480, 481
AsuHPI GGTGA 1 cut(s) 400
AvaI CYCGRG 3 cut(s) 322, 397, 479
AvaII GGWCC 3 cut(s) 165, 238, 360
BaeGI GKGCMC 2 cut(s) 37, 355
BamHI GGATCC 1 cut(s) 311
BanI GGYRCC 1 cut(s) 32
BarI GAAGNNNNNNTAC 2 cut(s) 11, 43
Bbv12I GWGCWC 1 cut(s) 185
BbvI GCAGC 1 cut(s) 389
BceAI ACGGC 1 cut(s) 162
BciT130I CCWGG 1 cut(s) 140
BcnI CCSGG 5 cut(s) 24, 215, 441, 480, 481
BcoDI GTCTC 1 cut(s) 287
BfaI CTAG 1 cut(s) 53
BisI GCNGC 4 cut(s) 172, 219, 403, 429
BlpI GCTNAGC 1 cut(s) 150
BlsI GCNGC 4 cut(s) 173, 220, 404, 430
Bme1390I CCNGG 6 cut(s) 24, 140, 215, 441, 480, 481
Bme18I GGWCC 3 cut(s) 165, 238, 360
BmeT110I CYCGRG 3 cut(s) 322, 397, 479
BmgBI CACGTC 1 cut(s) 191
BmgT120I GGNCC 4 cut(s) 165, 220, 238, 360
BmiI GGNNCC 5 cut(s) 34, 166, 313, 361, 362
BmrFI CCNGG 6 cut(s) 24, 140, 215, 441, 480, 481
BmrI ACTGGG 1 cut(s) 460
BmsI GCATC 1 cut(s) 284
BmuI ACTGGG 1 cut(s) 460
BoxI GACNNNNGTC 1 cut(s) 96
Bpu10I CCTNAGC 1 cut(s) 119
Bpu1102I GCTNAGC 1 cut(s) 150
BpuMI CCSGG 5 cut(s) 24, 215, 441, 480, 481
BsaI GGTCTC 1 cut(s) 287
BsaJI CCNNGG 7 cut(s) 138, 213, 286, 321, 440, 478, 479
BsaWI WCCGGW 2 cut(s) 203, 232
BsaXI ACNNNNNCTCC 2 cut(s) 149, 179
Bsc4I CCNNNNNNNGG 7 cut(s) 29, 65, 145, 161, 174, 292, 435
Bse118I RCCGGY 2 cut(s) 256, 435
Bse1I ACTGG 2 cut(s) 455, 510
BseAI TCCGGA 1 cut(s) 232
BseBI CCWGG 1 cut(s) 140
BseDI CCNNGG 7 cut(s) 138, 213, 286, 321, 440, 478, 479
BseGI GGATG 1 cut(s) 13
BseLI CCNNNNNNNGG 7 cut(s) 29, 65, 145, 161, 174, 292, 435
BseMII CTCAG 3 cut(s) 164, 333, 513
BseNI ACTGG 2 cut(s) 455, 510
BsePI GCGCGC 1 cut(s) 411
BseSI GKGCMC 2 cut(s) 37, 355
BseX3I CGGCCG 1 cut(s) 437
BseXI GCAGC 1 cut(s) 389
BseYI CCCAGC 1 cut(s) 348
Bsh1236I CGCG 6 cut(s) 45, 195, 411, 413, 415, 431
Bsh1285I CGRYCG 2 cut(s) 261, 440
BshFI GGCC 2 cut(s) 221, 439
BshNI GGYRCC 1 cut(s) 32
BsiEI CGRYCG 2 cut(s) 261, 440
BsiHKAI GWGCWC 1 cut(s) 185
BsiHKCI CYCGRG 3 cut(s) 322, 397, 479
BsiSI CCGG 9 cut(s) 23, 155, 204, 215, 233, 257, 436, 440, 480
BslFI GGGAC 2 cut(s) 346, 457
BslI CCNNNNNNNGG 7 cut(s) 29, 65, 145, 161, 174, 292, 435
BsmAI GTCTC 1 cut(s) 287
BsmFI GGGAC 2 cut(s) 346, 457
BsnI GGCC 2 cut(s) 221, 439
Bso31I GGTCTC 1 cut(s) 287
BsoBI CYCGRG 3 cut(s) 322, 397, 479
Bsp1286I GDGCHC 3 cut(s) 37, 185, 355
Bsp13I TCCGGA 1 cut(s) 232
Bsp143I GATC 2 cut(s) 311, 365
Bsp1720I GCTNAGC 1 cut(s) 150
BspACI CCGC 9 cut(s) 4, 116, 171, 186, 218, 273, 409, 421, 429
BspANI GGCC 2 cut(s) 221, 439
BspCNI CTCAG 3 cut(s) 163, 334, 512
BspEI TCCGGA 1 cut(s) 232
BspFNI CGCG 6 cut(s) 45, 195, 411, 413, 415, 431
BspLI GGNNCC 5 cut(s) 34, 166, 313, 361, 362
BspPI GGATC 3 cut(s) 306, 319, 360
BspQI GCTCTTC 1 cut(s) 173
BspT107I GGYRCC 1 cut(s) 32
BspTNI GGTCTC 1 cut(s) 287
BsrBI CCGCTC 1 cut(s) 421
BsrFI RCCGGY 2 cut(s) 256, 435
BsrI ACTGG 2 cut(s) 455, 510
BssAI RCCGGY 2 cut(s) 256, 435
BssECI CCNNGG 7 cut(s) 138, 213, 286, 321, 440, 478, 479
BssHII GCGCGC 1 cut(s) 411
BssMI GATC 2 cut(s) 311, 365
BssT1I CCWWGG 1 cut(s) 286
Bst2UI CCWGG 1 cut(s) 140
Bst4CI ACNGT 4 cut(s) 32, 95, 493, 531
Bst6I CTCTTC 1 cut(s) 173
BstC8I GCNNGC 3 cut(s) 413, 433, 437
BstDEI CTNAG 4 cut(s) 119, 150, 342, 499
BstF5I GGATG 1 cut(s) 13
BstFNI CGCG 6 cut(s) 45, 195, 411, 413, 415, 431
BstHHI GCGC 4 cut(s) 47, 211, 413, 415
BstKTI GATC 2 cut(s) 314, 368
BstMAI GTCTC 1 cut(s) 287
BstMBI GATC 2 cut(s) 311, 365
BstMCI CGRYCG 2 cut(s) 261, 440
BstMWI GCNNNNNNNGC 6 cut(s) 180, 215, 253, 345, 402, 408
BstNI CCWGG 1 cut(s) 140
BstPAI GACNNNNGTC 1 cut(s) 96
BstSCI CCNGG 6 cut(s) 22, 138, 213, 439, 478, 479
BstSLI GKGCMC 2 cut(s) 37, 355
BstUI CGCG 6 cut(s) 45, 195, 411, 413, 415, 431
BstV1I GCAGC 1 cut(s) 389
BstX2I RGATCY 1 cut(s) 311
BstYI RGATCY 1 cut(s) 311
BstZI CGGCCG 1 cut(s) 437
BsuRI GGCC 2 cut(s) 221, 439
BtrI CACGTC 1 cut(s) 191
BtsCI GGATG 1 cut(s) 13
Cac8I GCNNGC 3 cut(s) 413, 433, 437
CaiI CAGNNNCTG 1 cut(s) 174
CfoI GCGC 4 cut(s) 47, 211, 413, 415
Cfr10I RCCGGY 2 cut(s) 256, 435
Cfr13I GGNCC 4 cut(s) 165, 220, 238, 360
Cfr9I CCCGGG 1 cut(s) 479
Csp6I GTAC 2 cut(s) 263, 509
CviAII CATG 1 cut(s) 101
CviQI GTAC 2 cut(s) 263, 509
DdeI CTNAG 4 cut(s) 119, 150, 342, 499
DpnI GATC 2 cut(s) 313, 367
DpnII GATC 2 cut(s) 311, 365
EaeI YGGCCR 1 cut(s) 437
EagI CGGCCG 1 cut(s) 437
Eam1104I CTCTTC 1 cut(s) 173
EarI CTCTTC 1 cut(s) 173
EclXI CGGCCG 1 cut(s) 437
Eco130I CCWWGG 1 cut(s) 286
Eco31I GGTCTC 1 cut(s) 287
Eco47I GGWCC 3 cut(s) 165, 238, 360
Eco52I CGGCCG 1 cut(s) 437
Eco88I CYCGRG 3 cut(s) 322, 397, 479
EcoO109I RGGNCCY 1 cut(s) 360
EcoRII CCWGG 1 cut(s) 138
EcoT14I CCWWGG 1 cut(s) 286
ErhI CCWWGG 1 cut(s) 286
FaeI CATG 1 cut(s) 104
FaiI YATR 2 cut(s) 102, 269
FaqI GGGAC 2 cut(s) 346, 457
FatI CATG 1 cut(s) 100
FauI CCCGC 1 cut(s) 414
FblI GTMKAC 1 cut(s) 495
Fnu4HI GCNGC 4 cut(s) 172, 219, 403, 429
FokI GGATG 1 cut(s) 20
Fsp4HI GCNGC 4 cut(s) 172, 219, 403, 429
FspBI CTAG 1 cut(s) 53
GlaI GCGC 4 cut(s) 46, 210, 412, 414
GluI GCNGC 4 cut(s) 172, 219, 403, 429
GsaI CCCAGC 1 cut(s) 352
HaeIII GGCC 2 cut(s) 221, 439
HapII CCGG 9 cut(s) 23, 155, 204, 215, 233, 257, 436, 440, 480
HhaI GCGC 4 cut(s) 47, 211, 413, 415
Hin1II CATG 1 cut(s) 104
Hin6I GCGC 4 cut(s) 45, 209, 411, 413
HinP1I GCGC 4 cut(s) 45, 209, 411, 413
HincII GTYRAC 1 cut(s) 496
HindII GTYRAC 1 cut(s) 496
HinfI GANTC 2 cut(s) 497, 522
HpaII CCGG 9 cut(s) 23, 155, 204, 215, 233, 257, 436, 440, 480
HphI GGTGA 1 cut(s) 400
Hpy166II GTNNAC 2 cut(s) 391, 496
Hpy188I TCNGA 3 cut(s) 343, 502, 527
Hpy188III TCNNGA 4 cut(s) 233, 324, 363, 369
Hpy8I GTNNAC 2 cut(s) 391, 496
Hpy99I CGWCG 2 cut(s) 195, 381
HpyCH4III ACNGT 4 cut(s) 32, 95, 493, 531
HpyCH4IV ACGT 1 cut(s) 190
HpyF10VI GCNNNNNNNGC 6 cut(s) 180, 215, 253, 345, 402, 408
HpyF3I CTNAG 4 cut(s) 119, 150, 342, 499
HpySE526I ACGT 1 cut(s) 190
Hsp92II CATG 1 cut(s) 104
HspAI GCGC 4 cut(s) 45, 209, 411, 413
KflI GGGWCCC 1 cut(s) 360
Kpn2I TCCGGA 1 cut(s) 232
KroI GCCGGC 1 cut(s) 435
KroNI GCCGGC 1 cut(s) 437
Kzo9I GATC 2 cut(s) 311, 365
LguI GCTCTTC 1 cut(s) 173
Lsp1109I GCAGC 1 cut(s) 389
LweI GCATC 1 cut(s) 284
MaeI CTAG 1 cut(s) 53
MaeII ACGT 1 cut(s) 190
MaeIII GTNAC 2 cut(s) 26, 316
MalI GATC 2 cut(s) 313, 367
MauBI CGCGCGCG 1 cut(s) 411
MbiI CCGCTC 1 cut(s) 421
MboI GATC 2 cut(s) 311, 365
MboII GAAGA 2 cut(s) 28, 190
MflI RGATCY 1 cut(s) 311
MhlI GDGCHC 3 cut(s) 37, 185, 355
MluCI AATT 1 cut(s) 535
MlyI GAGTC 1 cut(s) 491
MnlI CCTC 4 cut(s) 151, 229, 331, 337
MroI TCCGGA 1 cut(s) 232
MroNI GCCGGC 1 cut(s) 435
MseI TTAA 3 cut(s) 80, 534, 538
MspA1I CMGCKG 1 cut(s) 171
MspI CCGG 9 cut(s) 23, 155, 204, 215, 233, 257, 436, 440, 480
MspR9I CCNGG 6 cut(s) 24, 140, 215, 441, 480, 481
MvaI CCWGG 1 cut(s) 140
MvnI CGCG 6 cut(s) 45, 195, 411, 413, 415, 431
MwoI GCNNNNNNNGC 6 cut(s) 180, 215, 253, 345, 402, 408
NaeI GCCGGC 1 cut(s) 437
NciI CCSGG 5 cut(s) 24, 215, 441, 480, 481
NdeII GATC 2 cut(s) 311, 365
NgoMIV GCCGGC 1 cut(s) 435
NlaIII CATG 1 cut(s) 104
NlaIV GGNNCC 5 cut(s) 34, 166, 313, 361, 362
PacI TTAATTAA 1 cut(s) 538
PaeR7I CTCGAG 1 cut(s) 397
PauI GCGCGC 1 cut(s) 411
PciSI GCTCTTC 1 cut(s) 173
PcsI WCGNNNNNNNCGW 1 cut(s) 361
PdiI GCCGGC 1 cut(s) 437
PfeI GAWTC 1 cut(s) 522
PflMI CCANNNNNTGG 1 cut(s) 174
PkrI GCNGC 4 cut(s) 173, 220, 404, 430
PleI GAGTC 1 cut(s) 491
PpsI GAGTC 1 cut(s) 491
PpuMI RGGWCCY 1 cut(s) 360
PshAI GACNNNNGTC 1 cut(s) 96
Psp5II RGGWCCY 1 cut(s) 360
Psp6I CCWGG 1 cut(s) 138
PspFI CCCAGC 1 cut(s) 348
PspGI CCWGG 1 cut(s) 138
PspN4I GGNNCC 5 cut(s) 34, 166, 313, 361, 362
PspPI GGNCC 4 cut(s) 165, 220, 238, 360
PspPPI RGGWCCY 1 cut(s) 360
PspXI VCTCGAGB 1 cut(s) 397
PstNI CAGNNNCTG 1 cut(s) 174
PsuI RGATCY 1 cut(s) 311
PteI GCGCGC 1 cut(s) 411
RsaI GTAC 2 cut(s) 264, 510
RsaNI GTAC 2 cut(s) 263, 509
SalI GTCGAC 1 cut(s) 494
SapI GCTCTTC 1 cut(s) 173
SaqAI TTAA 3 cut(s) 80, 534, 538
SatI GCNGC 4 cut(s) 172, 219, 403, 429
Sau3AI GATC 2 cut(s) 311, 365
Sau96I GGNCC 4 cut(s) 165, 220, 238, 360
SchI GAGTC 1 cut(s) 491
ScrFI CCNGG 6 cut(s) 24, 140, 215, 441, 480, 481
SduI GDGCHC 3 cut(s) 37, 185, 355
SetI ASST 6 cut(s) 54, 162, 193, 283, 323, 404
SfaNI GCATC 1 cut(s) 284
Sfr274I CTCGAG 1 cut(s) 397
SinI GGWCC 3 cut(s) 165, 238, 360
SlaI CTCGAG 1 cut(s) 397
SmaI CCCGGG 1 cut(s) 481
SmlI CTYRAG 1 cut(s) 397
SmoI CTYRAG 1 cut(s) 397
Sse9I AATT 1 cut(s) 535
SsiI CCGC 9 cut(s) 4, 116, 171, 186, 218, 273, 409, 421, 429
SspMI CTAG 1 cut(s) 53
StyD4I CCNGG 6 cut(s) 22, 138, 213, 439, 478, 479
StyI CCWWGG 1 cut(s) 286
TaaI ACNGT 4 cut(s) 32, 95, 493, 531
TaiI ACGT 1 cut(s) 193
TaqI TCGA 4 cut(s) 76, 109, 398, 495
TaqII GACCGA 1 cut(s) 255
TasI AATT 1 cut(s) 535
TauI GCSGC 3 cut(s) 174, 221, 431
TfiI GAWTC 1 cut(s) 522
Tru1I TTAA 3 cut(s) 80, 534, 538
Tru9I TTAA 3 cut(s) 80, 534, 538
TseI GCWGC 1 cut(s) 402
TspDTI ATGAA 1 cut(s) 24
TspGWI ACGGA 3 cut(s) 304, 461, 526
TspMI CCCGGG 1 cut(s) 479
Van91I CCANNNNNTGG 1 cut(s) 174
VpaK11BI GGWCC 3 cut(s) 165, 238, 360
XhoI CTCGAG 1 cut(s) 397
XmaI CCCGGG 1 cut(s) 479
XmiI GTMKAC 1 cut(s) 495
XspI CTAG 1 cut(s) 53
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.