Rroxscaffold_1G00000090

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
OG0000104
Physical Location & Seq
Reverse (-)
79035 .. 80131
1097 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00000090.1

Sequence Viewer

Length: 351 bp
ATGCCTGTCGGGACCCGAAAGATGGTGAACTATGCCGAGCGGGGGCGAAGCCGAGGAAACTCGGTGGAGGCCCGCGGCGATACCGACGTGCAAATCGACGGCGTGGCTGCTTTGTTGAGCCACGCCAAGGAATCGAGAGCTCCAAGTGGGCCATTTTTGCCTGCCCACCCTGGAAACGGCTCGGCCGGAGGTAGGGTCCAGCGGCTGGAAGAGCACCGCACGTCGCGTGGTGTCGGTGCGCCCCCGGCGGCCCTTGAAAATCCGGAGGACCGAGTGCCATTCACGCCGGTCGTACTCATAACCGCATCAGGTCTCCAAGGTGAACAGCCTGCGGTCAATGGAACAATGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

116

Amino Acids

12.09

Weight (kDa)

8.31

Isoelectric Point (pI)

48.61

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000104)

Species Orthologous Gene IDs
pyrus_communis pycom2246g00050 pycom2246g00060 pycom2246g00070 pycom2246g00100 pycom2246g00170 pycom2575g00020 pycom520g01350
rosa_roxburghii Rroxscaffold_102G00450880 Rroxscaffold_102G00450940 Rroxscaffold_103G00450570 Rroxscaffold_104G00444660 Rroxscaffold_104G00444710 Rroxscaffold_104G00444740 Rroxscaffold_104G00444800 Rroxscaffold_104G00444860 Rroxscaffold_105G00447090 Rroxscaffold_105G00447190 Rroxscaffold_105G00447230 Rroxscaffold_106G00451430 Rroxscaffold_107G00442440 Rroxscaffold_107G00442550 Rroxscaffold_107G00442640 Rroxscaffold_107G00442690 Rroxscaffold_111G00451560 Rroxscaffold_112G00451580 Rroxscaffold_113G00451620 Rroxscaffold_115G00451690 Rroxscaffold_118G00451780 Rroxscaffold_122G00451870 Rroxscaffold_123G00451910 Rroxscaffold_124G00451960 Rroxscaffold_128G00452050 Rroxscaffold_12G00450640 Rroxscaffold_131G00452100 Rroxscaffold_132G00452130 Rroxscaffold_138G00452190 Rroxscaffold_13G00448670 Rroxscaffold_14G00441890 Rroxscaffold_14G00441960 Rroxscaffold_14G00442010 Rroxscaffold_14G00442070 Rroxscaffold_15G00447460 Rroxscaffold_15G00447510 Rroxscaffold_15G00447580 Rroxscaffold_162G00450750 Rroxscaffold_17G00435460 Rroxscaffold_17G00435510 Rroxscaffold_17G00435570 Rroxscaffold_17G00435640 Rroxscaffold_17G00435910 Rroxscaffold_18G00446090 Rroxscaffold_18G00446110 Rroxscaffold_18G00446170 Rroxscaffold_19G00448930 Rroxscaffold_1G00000010 Rroxscaffold_1G00000090 Rroxscaffold_1G00000130 Rroxscaffold_20G00445030 Rroxscaffold_20G00445040 Rroxscaffold_20G00445070 Rroxscaffold_20G00445110 Rroxscaffold_21G00439440 Rroxscaffold_21G00439460 Rroxscaffold_21G00439470 Rroxscaffold_21G00439520 Rroxscaffold_21G00439570 Rroxscaffold_21G00439660 Rroxscaffold_22G00439850 Rroxscaffold_22G00439990 Rroxscaffold_22G00440030 Rroxscaffold_25G00450140 Rroxscaffold_25G00450170 Rroxscaffold_26G00447770 Rroxscaffold_27G00446650 Rroxscaffold_29G00441730 Rroxscaffold_29G00441740 Rroxscaffold_29G00441760 Rroxscaffold_29G00441780 Rroxscaffold_29G00441830 Rroxscaffold_29G00441870 Rroxscaffold_30G00449490 Rroxscaffold_30G00449510 Rroxscaffold_31G00438130 Rroxscaffold_31G00438170 Rroxscaffold_31G00438270 Rroxscaffold_32G00442790 Rroxscaffold_32G00442800 Rroxscaffold_32G00442840 Rroxscaffold_33G00439700 Rroxscaffold_33G00439710 Rroxscaffold_34G00443170 Rroxscaffold_34G00443210 Rroxscaffold_34G00443280 Rroxscaffold_34G00443310 Rroxscaffold_35G00441010 Rroxscaffold_35G00441120 Rroxscaffold_35G00441180 Rroxscaffold_35G00441260 Rroxscaffold_35G00441290 Rroxscaffold_36G00440070 Rroxscaffold_36G00440110 Rroxscaffold_36G00440140 Rroxscaffold_36G00440190 Rroxscaffold_37G00445180 Rroxscaffold_37G00445190 Rroxscaffold_37G00445230 Rroxscaffold_37G00445240 Rroxscaffold_37G00445270 Rroxscaffold_38G00444450 Rroxscaffold_38G00444530 Rroxscaffold_38G00444570 Rroxscaffold_38G00444600 Rroxscaffold_38G00444620 Rroxscaffold_39G00448260 Rroxscaffold_40G00447720 Rroxscaffold_43G00449810 Rroxscaffold_43G00449840 Rroxscaffold_43G00449900 Rroxscaffold_44G00440460 Rroxscaffold_44G00440470 Rroxscaffold_44G00440510 Rroxscaffold_44G00440600 Rroxscaffold_44G00440640 Rroxscaffold_45G00438810 Rroxscaffold_45G00438840 Rroxscaffold_45G00438870 Rroxscaffold_45G00438890 Rroxscaffold_45G00438980 Rroxscaffold_46G00448720 Rroxscaffold_46G00448740 Rroxscaffold_47G00443950 Rroxscaffold_47G00443980 Rroxscaffold_47G00444000 Rroxscaffold_47G00444090 Rroxscaffold_48G00448430 Rroxscaffold_48G00448470 Rroxscaffold_48G00448510 Rroxscaffold_49G00438600 Rroxscaffold_49G00438620 Rroxscaffold_49G00438680 Rroxscaffold_49G00438710 Rroxscaffold_49G00438740 Rroxscaffold_49G00438780 Rroxscaffold_50G00444160 Rroxscaffold_50G00444260 Rroxscaffold_50G00444290 Rroxscaffold_50G00444370 Rroxscaffold_50G00444400 Rroxscaffold_53G00449700 Rroxscaffold_53G00449730 Rroxscaffold_53G00449740 Rroxscaffold_54G00443410 Rroxscaffold_54G00443460 Rroxscaffold_54G00443490 Rroxscaffold_54G00443530 Rroxscaffold_54G00443580 Rroxscaffold_54G00443610 Rroxscaffold_54G00443670 Rroxscaffold_55G00450070 Rroxscaffold_55G00450130 Rroxscaffold_56G00450950 Rroxscaffold_58G00449000 Rroxscaffold_58G00449050 Rroxscaffold_59G00442150 Rroxscaffold_59G00442180 Rroxscaffold_59G00442250 Rroxscaffold_59G00442270 Rroxscaffold_59G00442280 Rroxscaffold_60G00448270 Rroxscaffold_60G00448290 Rroxscaffold_60G00448330 Rroxscaffold_60G00448400 Rroxscaffold_61G00449970 Rroxscaffold_62G00437930 Rroxscaffold_62G00438030 Rroxscaffold_64G00450690 Rroxscaffold_64G00450700 Rroxscaffold_65G00445280 Rroxscaffold_65G00445350 Rroxscaffold_65G00445390 Rroxscaffold_66G00437570 Rroxscaffold_66G00437600 Rroxscaffold_66G00437620 Rroxscaffold_66G00437690 Rroxscaffold_66G00437730 Rroxscaffold_66G00437770 Rroxscaffold_66G00437860 Rroxscaffold_68G00447000 Rroxscaffold_68G00447040 Rroxscaffold_69G00446680 Rroxscaffold_69G00446780 Rroxscaffold_69G00446790 Rroxscaffold_69G00446810 Rroxscaffold_6G00387760 Rroxscaffold_6G00387790 Rroxscaffold_6G00387830 Rroxscaffold_6G00387840 Rroxscaffold_70G00446290 Rroxscaffold_70G00446390 Rroxscaffold_71G00445730 Rroxscaffold_71G00445750 Rroxscaffold_72G00449340 Rroxscaffold_72G00449380 Rroxscaffold_73G00439090 Rroxscaffold_73G00439120 Rroxscaffold_73G00439190 Rroxscaffold_73G00439210 Rroxscaffold_73G00439250 Rroxscaffold_74G00442890 Rroxscaffold_74G00442960 Rroxscaffold_75G00447280 Rroxscaffold_75G00447300 Rroxscaffold_75G00447340 Rroxscaffold_75G00447390 Rroxscaffold_75G00447410 Rroxscaffold_75G00447440 Rroxscaffold_76G00448590 Rroxscaffold_78G00449630 Rroxscaffold_78G00449640 Rroxscaffold_79G00450250 Rroxscaffold_80G00450280 Rroxscaffold_80G00450300 Rroxscaffold_80G00450310 Rroxscaffold_81G00450490 Rroxscaffold_82G00450810 Rroxscaffold_86G00451260 Rroxscaffold_87G00451290 Rroxscaffold_87G00451300 Rroxscaffold_87G00451320 Rroxscaffold_88G00451390 Rroxscaffold_90G00448810 Rroxscaffold_91G00442980 Rroxscaffold_91G00443040 Rroxscaffold_92G00446460 Rroxscaffold_92G00446490 Rroxscaffold_92G00446500 Rroxscaffold_92G00446520 Rroxscaffold_92G00446540 Rroxscaffold_92G00446560 Rroxscaffold_93G00440970 Rroxscaffold_93G00440990 Rroxscaffold_94G00445800 Rroxscaffold_94G00445870 Rroxscaffold_94G00445950 Rroxscaffold_94G00445990 Rroxscaffold_95G00449230 Rroxscaffold_95G00449260 Rroxscaffold_95G00449270 Rroxscaffold_96G00449080 Rroxscaffold_97G00442330 Rroxscaffold_97G00442350 Rroxscaffold_97G00442360 Rroxscaffold_98G00451340 Rroxscaffold_99G00451190 Rroxscaffold_99G00451210

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 205
AccBSI CCGCTC 1 cut(s) 40
AccII CGCG 2 cut(s) 75, 226
AccIII TCCGGA 1 cut(s) 262
AciI CCGC 8 cut(s) 40, 73, 75, 202, 217, 248, 303, 332
AcoI YGGCCR 1 cut(s) 183
AfaI GTAC 1 cut(s) 294
AfiI CCNNNNNNNGG 6 cut(s) 22, 42, 127, 176, 192, 205
AgsI TTSAA 1 cut(s) 257
AjiI CACGTC 2 cut(s) 88, 222
AjnI CCWGG 1 cut(s) 169
AluBI AGCT 1 cut(s) 140
AluI AGCT 1 cut(s) 140
Alw21I GWGCWC 2 cut(s) 142, 216
Alw26I GTCTC 1 cut(s) 317
AlwNI CAGNNNCTG 1 cut(s) 205
Aor13HI TCCGGA 1 cut(s) 262
AoxI GGCC 4 cut(s) 69, 149, 183, 249
ApeKI GCWGC 1 cut(s) 107
AspLEI GCGC 1 cut(s) 241
AspS9I GGNCC 6 cut(s) 12, 70, 149, 196, 250, 268
AsuC2I CCSGG 1 cut(s) 245
AsuHPI GGTGA 2 cut(s) 37, 332
AvaII GGWCC 3 cut(s) 12, 196, 268
BaeI ACNNNNGTAYC 2 cut(s) 72, 105
BanII GRGCYC 1 cut(s) 142
Bbv12I GWGCWC 2 cut(s) 142, 216
BbvI GCAGC 1 cut(s) 94
BccI CCATC 1 cut(s) 16
BceAI ACGGC 2 cut(s) 115, 193
BciT130I CCWGG 1 cut(s) 171
BcnI CCSGG 1 cut(s) 245
BcoDI GTCTC 1 cut(s) 317
BisI GCNGC 4 cut(s) 76, 108, 203, 249
BlsI GCNGC 4 cut(s) 77, 109, 204, 250
Bme1390I CCNGG 2 cut(s) 171, 245
Bme18I GGWCC 3 cut(s) 12, 196, 268
BmgBI CACGTC 2 cut(s) 88, 222
BmgT120I GGNCC 6 cut(s) 12, 70, 149, 196, 250, 268
BmiI GGNNCC 3 cut(s) 13, 14, 197
BmrFI CCNGG 2 cut(s) 171, 245
BmsI GCATC 1 cut(s) 314
BpuMI CCSGG 1 cut(s) 245
BsaI GGTCTC 1 cut(s) 317
BsaJI CCNNGG 6 cut(s) 52, 73, 126, 169, 243, 316
BsaWI WCCGGW 1 cut(s) 262
BsaXI ACNNNNNCTCC 2 cut(s) 180, 210
Bsc4I CCNNNNNNNGG 6 cut(s) 22, 42, 127, 176, 192, 205
Bse118I RCCGGY 1 cut(s) 286
BseAI TCCGGA 1 cut(s) 262
BseBI CCWGG 1 cut(s) 171
BseDI CCNNGG 6 cut(s) 52, 73, 126, 169, 243, 316
BseLI CCNNNNNNNGG 6 cut(s) 22, 42, 127, 176, 192, 205
BseX3I CGGCCG 1 cut(s) 183
BseXI GCAGC 1 cut(s) 94
Bsh1236I CGCG 2 cut(s) 75, 226
Bsh1285I CGRYCG 2 cut(s) 186, 291
BshFI GGCC 4 cut(s) 71, 151, 185, 251
BsiEI CGRYCG 2 cut(s) 186, 291
BsiHKAI GWGCWC 2 cut(s) 142, 216
BsiSI CCGG 4 cut(s) 186, 245, 263, 287
BslFI GGGAC 1 cut(s) 25
BslI CCNNNNNNNGG 6 cut(s) 22, 42, 127, 176, 192, 205
BsmAI GTCTC 1 cut(s) 317
BsmFI GGGAC 1 cut(s) 25
BsnI GGCC 4 cut(s) 71, 151, 185, 251
Bso31I GGTCTC 1 cut(s) 317
Bsp1286I GDGCHC 2 cut(s) 142, 216
Bsp13I TCCGGA 1 cut(s) 262
BspACI CCGC 8 cut(s) 40, 73, 75, 202, 217, 248, 303, 332
BspANI GGCC 4 cut(s) 71, 151, 185, 251
BspEI TCCGGA 1 cut(s) 262
BspFNI CGCG 2 cut(s) 75, 226
BspLI GGNNCC 3 cut(s) 13, 14, 197
BspQI GCTCTTC 1 cut(s) 204
BspTNI GGTCTC 1 cut(s) 317
BsrBI CCGCTC 1 cut(s) 40
BsrFI RCCGGY 1 cut(s) 286
BssAI RCCGGY 1 cut(s) 286
BssECI CCNNGG 6 cut(s) 52, 73, 126, 169, 243, 316
BssT1I CCWWGG 2 cut(s) 126, 316
Bst2UI CCWGG 1 cut(s) 171
Bst6I CTCTTC 1 cut(s) 204
BstC8I GCNNGC 3 cut(s) 73, 162, 330
BstDSI CCRYGG 1 cut(s) 73
BstFNI CGCG 2 cut(s) 75, 226
BstHHI GCGC 1 cut(s) 241
BstMAI GTCTC 1 cut(s) 317
BstMCI CGRYCG 2 cut(s) 186, 291
BstMWI GCNNNNNNNGC 4 cut(s) 157, 211, 245, 283
BstNI CCWGG 1 cut(s) 171
BstSCI CCNGG 2 cut(s) 169, 243
BstUI CGCG 2 cut(s) 75, 226
BstV1I GCAGC 1 cut(s) 94
BstZI CGGCCG 1 cut(s) 183
BsuRI GGCC 4 cut(s) 71, 151, 185, 251
BtgI CCRYGG 1 cut(s) 73
BtrI CACGTC 2 cut(s) 88, 222
Cac8I GCNNGC 3 cut(s) 73, 162, 330
CaiI CAGNNNCTG 1 cut(s) 205
CfoI GCGC 1 cut(s) 241
Cfr10I RCCGGY 1 cut(s) 286
Cfr13I GGNCC 6 cut(s) 12, 70, 149, 196, 250, 268
Cfr42I CCGCGG 1 cut(s) 76
Csp6I GTAC 1 cut(s) 293
CviQI GTAC 1 cut(s) 293
EaeI YGGCCR 1 cut(s) 183
EagI CGGCCG 1 cut(s) 183
Eam1104I CTCTTC 1 cut(s) 204
EarI CTCTTC 1 cut(s) 204
Ecl136II GAGCTC 1 cut(s) 140
EclXI CGGCCG 1 cut(s) 183
Eco130I CCWWGG 2 cut(s) 126, 316
Eco24I GRGCYC 1 cut(s) 142
Eco31I GGTCTC 1 cut(s) 317
Eco47I GGWCC 3 cut(s) 12, 196, 268
Eco52I CGGCCG 1 cut(s) 183
Eco53kI GAGCTC 1 cut(s) 140
EcoICRI GAGCTC 1 cut(s) 140
EcoO109I RGGNCCY 1 cut(s) 12
EcoRII CCWGG 1 cut(s) 169
EcoT14I CCWWGG 2 cut(s) 126, 316
EcoT38I GRGCYC 1 cut(s) 142
ErhI CCWWGG 2 cut(s) 126, 316
FaiI YATR 2 cut(s) 33, 299
FaqI GGGAC 1 cut(s) 25
FauI CCCGC 2 cut(s) 33, 80
Fnu4HI GCNGC 4 cut(s) 76, 108, 203, 249
FriOI GRGCYC 1 cut(s) 142
Fsp4HI GCNGC 4 cut(s) 76, 108, 203, 249
GlaI GCGC 1 cut(s) 240
GluI GCNGC 4 cut(s) 76, 108, 203, 249
HaeIII GGCC 4 cut(s) 71, 151, 185, 251
HapII CCGG 4 cut(s) 186, 245, 263, 287
HhaI GCGC 1 cut(s) 241
Hin6I GCGC 1 cut(s) 239
HinP1I GCGC 1 cut(s) 239
HinfI GANTC 1 cut(s) 131
HpaII CCGG 4 cut(s) 186, 245, 263, 287
HphI GGTGA 2 cut(s) 37, 332
Hpy166II GTNNAC 2 cut(s) 28, 323
Hpy188III TCNNGA 3 cut(s) 10, 135, 263
Hpy8I GTNNAC 2 cut(s) 28, 323
Hpy99I CGWCG 3 cut(s) 89, 101, 226
HpyCH4IV ACGT 2 cut(s) 87, 221
HpyCH4V TGCA 1 cut(s) 91
HpyF10VI GCNNNNNNNGC 4 cut(s) 157, 211, 245, 283
HpySE526I ACGT 2 cut(s) 87, 221
HspAI GCGC 1 cut(s) 239
KflI GGGWCCC 1 cut(s) 12
Kpn2I TCCGGA 1 cut(s) 262
KspI CCGCGG 1 cut(s) 76
LguI GCTCTTC 1 cut(s) 204
LmnI GCTCC 1 cut(s) 145
Lsp1109I GCAGC 1 cut(s) 94
LweI GCATC 1 cut(s) 314
MaeII ACGT 2 cut(s) 87, 221
MbiI CCGCTC 1 cut(s) 40
MboII GAAGA 1 cut(s) 221
MhlI GDGCHC 2 cut(s) 142, 216
MnlI CCTC 4 cut(s) 47, 61, 182, 259
MroI TCCGGA 1 cut(s) 262
MspA1I CMGCKG 2 cut(s) 75, 202
MspI CCGG 4 cut(s) 186, 245, 263, 287
MspR9I CCNGG 2 cut(s) 171, 245
MvaI CCWGG 1 cut(s) 171
MvnI CGCG 2 cut(s) 75, 226
MwoI GCNNNNNNNGC 4 cut(s) 157, 211, 245, 283
NciI CCSGG 1 cut(s) 245
NlaIV GGNNCC 3 cut(s) 13, 14, 197
NmeAIII GCCGAG 3 cut(s) 61, 77, 161
PciSI GCTCTTC 1 cut(s) 204
PcsI WCGNNNNNNNCGW 1 cut(s) 93
PfeI GAWTC 1 cut(s) 131
PflMI CCANNNNNTGG 1 cut(s) 205
PkrI GCNGC 4 cut(s) 77, 109, 204, 250
PpuMI RGGWCCY 1 cut(s) 12
Psp124BI GAGCTC 1 cut(s) 142
Psp5II RGGWCCY 1 cut(s) 12
Psp6I CCWGG 1 cut(s) 169
PspGI CCWGG 1 cut(s) 169
PspN4I GGNNCC 3 cut(s) 13, 14, 197
PspPI GGNCC 6 cut(s) 12, 70, 149, 196, 250, 268
PspPPI RGGWCCY 1 cut(s) 12
PstNI CAGNNNCTG 1 cut(s) 205
RsaI GTAC 1 cut(s) 294
RsaNI GTAC 1 cut(s) 293
SacI GAGCTC 1 cut(s) 142
SacII CCGCGG 1 cut(s) 76
SapI GCTCTTC 1 cut(s) 204
SatI GCNGC 4 cut(s) 76, 108, 203, 249
Sau96I GGNCC 6 cut(s) 12, 70, 149, 196, 250, 268
ScrFI CCNGG 2 cut(s) 171, 245
SduI GDGCHC 2 cut(s) 142, 216
SetI ASST 6 cut(s) 90, 142, 193, 224, 313, 322
SfaNI GCATC 1 cut(s) 314
Sfr303I CCGCGG 1 cut(s) 76
SgrBI CCGCGG 1 cut(s) 76
SinI GGWCC 3 cut(s) 12, 196, 268
SsiI CCGC 8 cut(s) 40, 73, 75, 202, 217, 248, 303, 332
SstI GAGCTC 1 cut(s) 142
StyD4I CCNGG 2 cut(s) 169, 243
StyI CCWWGG 2 cut(s) 126, 316
TaiI ACGT 2 cut(s) 90, 224
TaqI TCGA 2 cut(s) 96, 134
TaqII GACCGA 1 cut(s) 285
TauI GCSGC 3 cut(s) 78, 205, 251
TfiI GAWTC 1 cut(s) 131
TseI GCWGC 1 cut(s) 107
Van91I CCANNNNNTGG 1 cut(s) 205
VpaK11BI GGWCC 3 cut(s) 12, 196, 268
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.