Rroxscaffold_79G00450250

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000079
OG0000104
Physical Location & Seq
Reverse (-)
38002 .. 39217
1216 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_79G00450250.1

Sequence Viewer

Length: 393 bp
ATGGAACAATGTAGGCAAGGGAAGTCGGCAAAATGGATCCGTAACCTCGGGAAAAGGATTGGCTGCGAGGGGCGGGCACGGGGTCCCGATCCGAACCCGTCGGCTGTCGGTGGCTGCTCGAGCGCCCGCGGCGAGAGCGGGTCGCCGCGTGCCGGCGGGGAGACGGACGGGGACGCTCCTTCGGGGGCTTTCCCGGGCGTTCAACGGTCGACTCGAAGCGGTACGGACAAGGGGAATCATCCATGTTTAATTAAAACAAAGCATTGCGATGGTCCTGCGGATGTTAACGCAATTACGAGAGGAACCGTTGATTCGCACAATTGGTCATCGCGCTTGGTTGAAAAGCCGGTGGCGCGAAGCTACCGTGCGGCTGGATTATATGAACGCCTCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

130

Amino Acids

13.7

Weight (kDa)

9.66

Isoelectric Point (pI)

35.36

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000104)

Species Orthologous Gene IDs
pyrus_communis pycom2246g00050 pycom2246g00060 pycom2246g00070 pycom2246g00100 pycom2246g00170 pycom2575g00020 pycom520g01350
rosa_roxburghii Rroxscaffold_102G00450880 Rroxscaffold_102G00450940 Rroxscaffold_103G00450570 Rroxscaffold_104G00444660 Rroxscaffold_104G00444710 Rroxscaffold_104G00444740 Rroxscaffold_104G00444800 Rroxscaffold_104G00444860 Rroxscaffold_105G00447090 Rroxscaffold_105G00447190 Rroxscaffold_105G00447230 Rroxscaffold_106G00451430 Rroxscaffold_107G00442440 Rroxscaffold_107G00442550 Rroxscaffold_107G00442640 Rroxscaffold_107G00442690 Rroxscaffold_111G00451560 Rroxscaffold_112G00451580 Rroxscaffold_113G00451620 Rroxscaffold_115G00451690 Rroxscaffold_118G00451780 Rroxscaffold_122G00451870 Rroxscaffold_123G00451910 Rroxscaffold_124G00451960 Rroxscaffold_128G00452050 Rroxscaffold_12G00450640 Rroxscaffold_131G00452100 Rroxscaffold_132G00452130 Rroxscaffold_138G00452190 Rroxscaffold_13G00448670 Rroxscaffold_14G00441890 Rroxscaffold_14G00441960 Rroxscaffold_14G00442010 Rroxscaffold_14G00442070 Rroxscaffold_15G00447460 Rroxscaffold_15G00447510 Rroxscaffold_15G00447580 Rroxscaffold_162G00450750 Rroxscaffold_17G00435460 Rroxscaffold_17G00435510 Rroxscaffold_17G00435570 Rroxscaffold_17G00435640 Rroxscaffold_17G00435910 Rroxscaffold_18G00446090 Rroxscaffold_18G00446110 Rroxscaffold_18G00446170 Rroxscaffold_19G00448930 Rroxscaffold_1G00000010 Rroxscaffold_1G00000090 Rroxscaffold_1G00000130 Rroxscaffold_20G00445030 Rroxscaffold_20G00445040 Rroxscaffold_20G00445070 Rroxscaffold_20G00445110 Rroxscaffold_21G00439440 Rroxscaffold_21G00439460 Rroxscaffold_21G00439470 Rroxscaffold_21G00439520 Rroxscaffold_21G00439570 Rroxscaffold_21G00439660 Rroxscaffold_22G00439850 Rroxscaffold_22G00439990 Rroxscaffold_22G00440030 Rroxscaffold_25G00450140 Rroxscaffold_25G00450170 Rroxscaffold_26G00447770 Rroxscaffold_27G00446650 Rroxscaffold_29G00441730 Rroxscaffold_29G00441740 Rroxscaffold_29G00441760 Rroxscaffold_29G00441780 Rroxscaffold_29G00441830 Rroxscaffold_29G00441870 Rroxscaffold_30G00449490 Rroxscaffold_30G00449510 Rroxscaffold_31G00438130 Rroxscaffold_31G00438170 Rroxscaffold_31G00438270 Rroxscaffold_32G00442790 Rroxscaffold_32G00442800 Rroxscaffold_32G00442840 Rroxscaffold_33G00439700 Rroxscaffold_33G00439710 Rroxscaffold_34G00443170 Rroxscaffold_34G00443210 Rroxscaffold_34G00443280 Rroxscaffold_34G00443310 Rroxscaffold_35G00441010 Rroxscaffold_35G00441120 Rroxscaffold_35G00441180 Rroxscaffold_35G00441260 Rroxscaffold_35G00441290 Rroxscaffold_36G00440070 Rroxscaffold_36G00440110 Rroxscaffold_36G00440140 Rroxscaffold_36G00440190 Rroxscaffold_37G00445180 Rroxscaffold_37G00445190 Rroxscaffold_37G00445230 Rroxscaffold_37G00445240 Rroxscaffold_37G00445270 Rroxscaffold_38G00444450 Rroxscaffold_38G00444530 Rroxscaffold_38G00444570 Rroxscaffold_38G00444600 Rroxscaffold_38G00444620 Rroxscaffold_39G00448260 Rroxscaffold_40G00447720 Rroxscaffold_43G00449810 Rroxscaffold_43G00449840 Rroxscaffold_43G00449900 Rroxscaffold_44G00440460 Rroxscaffold_44G00440470 Rroxscaffold_44G00440510 Rroxscaffold_44G00440600 Rroxscaffold_44G00440640 Rroxscaffold_45G00438810 Rroxscaffold_45G00438840 Rroxscaffold_45G00438870 Rroxscaffold_45G00438890 Rroxscaffold_45G00438980 Rroxscaffold_46G00448720 Rroxscaffold_46G00448740 Rroxscaffold_47G00443950 Rroxscaffold_47G00443980 Rroxscaffold_47G00444000 Rroxscaffold_47G00444090 Rroxscaffold_48G00448430 Rroxscaffold_48G00448470 Rroxscaffold_48G00448510 Rroxscaffold_49G00438600 Rroxscaffold_49G00438620 Rroxscaffold_49G00438680 Rroxscaffold_49G00438710 Rroxscaffold_49G00438740 Rroxscaffold_49G00438780 Rroxscaffold_50G00444160 Rroxscaffold_50G00444260 Rroxscaffold_50G00444290 Rroxscaffold_50G00444370 Rroxscaffold_50G00444400 Rroxscaffold_53G00449700 Rroxscaffold_53G00449730 Rroxscaffold_53G00449740 Rroxscaffold_54G00443410 Rroxscaffold_54G00443460 Rroxscaffold_54G00443490 Rroxscaffold_54G00443530 Rroxscaffold_54G00443580 Rroxscaffold_54G00443610 Rroxscaffold_54G00443670 Rroxscaffold_55G00450070 Rroxscaffold_55G00450130 Rroxscaffold_56G00450950 Rroxscaffold_58G00449000 Rroxscaffold_58G00449050 Rroxscaffold_59G00442150 Rroxscaffold_59G00442180 Rroxscaffold_59G00442250 Rroxscaffold_59G00442270 Rroxscaffold_59G00442280 Rroxscaffold_60G00448270 Rroxscaffold_60G00448290 Rroxscaffold_60G00448330 Rroxscaffold_60G00448400 Rroxscaffold_61G00449970 Rroxscaffold_62G00437930 Rroxscaffold_62G00438030 Rroxscaffold_64G00450690 Rroxscaffold_64G00450700 Rroxscaffold_65G00445280 Rroxscaffold_65G00445350 Rroxscaffold_65G00445390 Rroxscaffold_66G00437570 Rroxscaffold_66G00437600 Rroxscaffold_66G00437620 Rroxscaffold_66G00437690 Rroxscaffold_66G00437730 Rroxscaffold_66G00437770 Rroxscaffold_66G00437860 Rroxscaffold_68G00447000 Rroxscaffold_68G00447040 Rroxscaffold_69G00446680 Rroxscaffold_69G00446780 Rroxscaffold_69G00446790 Rroxscaffold_69G00446810 Rroxscaffold_6G00387760 Rroxscaffold_6G00387790 Rroxscaffold_6G00387830 Rroxscaffold_6G00387840 Rroxscaffold_70G00446290 Rroxscaffold_70G00446390 Rroxscaffold_71G00445730 Rroxscaffold_71G00445750 Rroxscaffold_72G00449340 Rroxscaffold_72G00449380 Rroxscaffold_73G00439090 Rroxscaffold_73G00439120 Rroxscaffold_73G00439190 Rroxscaffold_73G00439210 Rroxscaffold_73G00439250 Rroxscaffold_74G00442890 Rroxscaffold_74G00442960 Rroxscaffold_75G00447280 Rroxscaffold_75G00447300 Rroxscaffold_75G00447340 Rroxscaffold_75G00447390 Rroxscaffold_75G00447410 Rroxscaffold_75G00447440 Rroxscaffold_76G00448590 Rroxscaffold_78G00449630 Rroxscaffold_78G00449640 Rroxscaffold_79G00450250 Rroxscaffold_80G00450280 Rroxscaffold_80G00450300 Rroxscaffold_80G00450310 Rroxscaffold_81G00450490 Rroxscaffold_82G00450810 Rroxscaffold_86G00451260 Rroxscaffold_87G00451290 Rroxscaffold_87G00451300 Rroxscaffold_87G00451320 Rroxscaffold_88G00451390 Rroxscaffold_90G00448810 Rroxscaffold_91G00442980 Rroxscaffold_91G00443040 Rroxscaffold_92G00446460 Rroxscaffold_92G00446490 Rroxscaffold_92G00446500 Rroxscaffold_92G00446520 Rroxscaffold_92G00446540 Rroxscaffold_92G00446560 Rroxscaffold_93G00440970 Rroxscaffold_93G00440990 Rroxscaffold_94G00445800 Rroxscaffold_94G00445870 Rroxscaffold_94G00445950 Rroxscaffold_94G00445990 Rroxscaffold_95G00449230 Rroxscaffold_95G00449260 Rroxscaffold_95G00449270 Rroxscaffold_96G00449080 Rroxscaffold_97G00442330 Rroxscaffold_97G00442350 Rroxscaffold_97G00442360 Rroxscaffold_98G00451340 Rroxscaffold_99G00451190 Rroxscaffold_99G00451210

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 138
AccI GTMKAC 1 cut(s) 209
AccII CGCG 4 cut(s) 129, 148, 331, 355
AciI CCGC 9 cut(s) 73, 127, 129, 138, 146, 156, 219, 278, 368
AclWI GGATC 3 cut(s) 31, 44, 83
AfaI GTAC 1 cut(s) 223
AfiI CCNNNNNNNGG 1 cut(s) 152
AgsI TTSAA 2 cut(s) 203, 341
AluBI AGCT 1 cut(s) 360
AluI AGCT 1 cut(s) 360
Alw26I GTCTC 1 cut(s) 155
AlwI GGATC 3 cut(s) 31, 44, 83
Ama87I CYCGRG 3 cut(s) 47, 118, 193
ApeKI GCWGC 2 cut(s) 63, 114
AspLEI GCGC 3 cut(s) 125, 333, 355
AspS9I GGNCC 2 cut(s) 83, 272
AsuC2I CCSGG 2 cut(s) 194, 195
AvaI CYCGRG 3 cut(s) 47, 118, 193
AvaII GGWCC 2 cut(s) 83, 272
BaeGI GKGCMC 1 cut(s) 79
BamHI GGATCC 1 cut(s) 36
BbvI GCAGC 2 cut(s) 50, 101
BccI CCATC 1 cut(s) 263
BcgI CGANNNNNNTGC 2 cut(s) 257, 291
BcnI CCSGG 2 cut(s) 194, 195
BcoDI GTCTC 1 cut(s) 155
BfoI RGCGCY 1 cut(s) 126
BisI GCNGC 5 cut(s) 64, 115, 130, 146, 369
BlsI GCNGC 5 cut(s) 65, 116, 131, 147, 370
Bme1390I CCNGG 2 cut(s) 194, 195
Bme18I GGWCC 2 cut(s) 83, 272
BmeT110I CYCGRG 3 cut(s) 47, 118, 193
BmgT120I GGNCC 2 cut(s) 83, 272
BmiI GGNNCC 4 cut(s) 38, 84, 85, 304
BmrFI CCNGG 2 cut(s) 194, 195
BpuMI CCSGG 2 cut(s) 194, 195
BsaJI CCNNGG 3 cut(s) 46, 127, 193
Bsc4I CCNNNNNNNGG 1 cut(s) 152
Bse118I RCCGGY 2 cut(s) 152, 346
Bse3DI GCAATG 1 cut(s) 262
BseDI CCNNGG 3 cut(s) 46, 127, 193
BseGI GGATG 2 cut(s) 238, 286
BseLI CCNNNNNNNGG 1 cut(s) 152
BseMI GCAATG 1 cut(s) 262
BseSI GKGCMC 1 cut(s) 79
BseXI GCAGC 2 cut(s) 50, 101
Bsh1236I CGCG 4 cut(s) 129, 148, 331, 355
Bsh1285I CGRYCG 1 cut(s) 209
BsiEI CGRYCG 1 cut(s) 209
BsiHKCI CYCGRG 3 cut(s) 47, 118, 193
BsiSI CCGG 3 cut(s) 153, 194, 347
BslFI GGGAC 2 cut(s) 69, 185
BslI CCNNNNNNNGG 1 cut(s) 152
BsmAI GTCTC 1 cut(s) 155
BsmBI CGTCTC 1 cut(s) 155
BsmFI GGGAC 2 cut(s) 69, 185
BsoBI CYCGRG 3 cut(s) 47, 118, 193
Bsp1286I GDGCHC 1 cut(s) 79
Bsp143I GATC 2 cut(s) 36, 88
BspACI CCGC 9 cut(s) 73, 127, 129, 138, 146, 156, 219, 278, 368
BspFNI CGCG 4 cut(s) 129, 148, 331, 355
BspLI GGNNCC 4 cut(s) 38, 84, 85, 304
BspPI GGATC 3 cut(s) 31, 44, 83
BsrBI CCGCTC 1 cut(s) 138
BsrDI GCAATG 1 cut(s) 262
BsrFI RCCGGY 2 cut(s) 152, 346
BssAI RCCGGY 2 cut(s) 152, 346
BssECI CCNNGG 3 cut(s) 46, 127, 193
BssMI GATC 2 cut(s) 36, 88
Bst4CI ACNGT 3 cut(s) 207, 307, 365
BstC8I GCNNGC 4 cut(s) 75, 127, 150, 154
BstDSI CCRYGG 1 cut(s) 127
BstF5I GGATG 2 cut(s) 238, 286
BstFNI CGCG 4 cut(s) 129, 148, 331, 355
BstH2I RGCGCY 1 cut(s) 126
BstHHI GCGC 3 cut(s) 125, 333, 355
BstKTI GATC 2 cut(s) 39, 91
BstMAI GTCTC 1 cut(s) 155
BstMBI GATC 2 cut(s) 36, 88
BstMCI CGRYCG 1 cut(s) 209
BstMWI GCNNNNNNNGC 4 cut(s) 120, 129, 135, 352
BstSCI CCNGG 2 cut(s) 192, 193
BstSLI GKGCMC 1 cut(s) 79
BstUI CGCG 4 cut(s) 129, 148, 331, 355
BstV1I GCAGC 2 cut(s) 50, 101
BstX2I RGATCY 1 cut(s) 36
BstYI RGATCY 1 cut(s) 36
BtgI CCRYGG 1 cut(s) 127
BtgZI GCGATG 2 cut(s) 282, 312
BtsCI GGATG 2 cut(s) 238, 286
Cac8I GCNNGC 4 cut(s) 75, 127, 150, 154
CfoI GCGC 3 cut(s) 125, 333, 355
Cfr10I RCCGGY 2 cut(s) 152, 346
Cfr13I GGNCC 2 cut(s) 83, 272
Cfr42I CCGCGG 1 cut(s) 130
Cfr9I CCCGGG 1 cut(s) 193
CseI GACGC 1 cut(s) 182
Csp6I GTAC 1 cut(s) 222
CviAII CATG 1 cut(s) 243
CviJI RGCY 7 cut(s) 63, 104, 114, 188, 346, 360, 371
CviKI_1 RGCY 7 cut(s) 63, 104, 114, 188, 346, 360, 371
CviQI GTAC 1 cut(s) 222
DpnI GATC 2 cut(s) 38, 90
DpnII GATC 2 cut(s) 36, 88
Eco47I GGWCC 2 cut(s) 83, 272
Eco88I CYCGRG 3 cut(s) 47, 118, 193
EcoO109I RGGNCCY 1 cut(s) 83
Esp3I CGTCTC 1 cut(s) 155
FaeI CATG 1 cut(s) 246
FaiI YATR 3 cut(s) 244, 379, 381
FaqI GGGAC 2 cut(s) 69, 185
FatI CATG 1 cut(s) 242
FauI CCCGC 4 cut(s) 66, 131, 134, 149
FblI GTMKAC 1 cut(s) 209
Fnu4HI GCNGC 5 cut(s) 64, 115, 130, 146, 369
FokI GGATG 2 cut(s) 225, 293
Fsp4HI GCNGC 5 cut(s) 64, 115, 130, 146, 369
GlaI GCGC 3 cut(s) 124, 332, 354
GluI GCNGC 5 cut(s) 64, 115, 130, 146, 369
HaeII RGCGCY 1 cut(s) 126
HapII CCGG 3 cut(s) 153, 194, 347
HgaI GACGC 1 cut(s) 182
HhaI GCGC 3 cut(s) 125, 333, 355
Hin1II CATG 1 cut(s) 246
Hin6I GCGC 3 cut(s) 123, 331, 353
HinP1I GCGC 3 cut(s) 123, 331, 353
HincII GTYRAC 2 cut(s) 210, 286
HindII GTYRAC 2 cut(s) 210, 286
HinfI GANTC 3 cut(s) 211, 235, 311
HpaI GTTAAC 1 cut(s) 286
HpaII CCGG 3 cut(s) 153, 194, 347
Hpy166II GTNNAC 2 cut(s) 210, 286
Hpy188I TCNGA 1 cut(s) 93
Hpy188III TCNNGA 2 cut(s) 49, 86
Hpy8I GTNNAC 2 cut(s) 210, 286
Hpy99I CGWCG 1 cut(s) 103
HpyAV CCTTC 1 cut(s) 189
HpyCH4III ACNGT 3 cut(s) 207, 307, 365
HpyF10VI GCNNNNNNNGC 4 cut(s) 120, 129, 135, 352
Hsp92II CATG 1 cut(s) 246
HspAI GCGC 3 cut(s) 123, 331, 353
KflI GGGWCCC 1 cut(s) 83
KroI GCCGGC 1 cut(s) 152
KroNI GCCGGC 1 cut(s) 154
KspAI GTTAAC 1 cut(s) 286
KspI CCGCGG 1 cut(s) 130
Kzo9I GATC 2 cut(s) 36, 88
LmnI GCTCC 1 cut(s) 181
LpnPI CCDG 5 cut(s) 166, 207, 288, 357, 360
Lsp1109I GCAGC 2 cut(s) 50, 101
MaeIII GTNAC 1 cut(s) 41
MalI GATC 2 cut(s) 38, 90
MbiI CCGCTC 1 cut(s) 138
MboI GATC 2 cut(s) 36, 88
MfeI CAATTG 1 cut(s) 319
MflI RGATCY 1 cut(s) 36
MhlI GDGCHC 1 cut(s) 79
MluCI AATT 3 cut(s) 249, 291, 319
MlyI GAGTC 1 cut(s) 205
MnlI CCTC 3 cut(s) 56, 61, 293
MroNI GCCGGC 1 cut(s) 152
MseI TTAA 3 cut(s) 248, 252, 285
MslI CAYNNNNRTG 1 cut(s) 267
MspA1I CMGCKG 1 cut(s) 129
MspI CCGG 3 cut(s) 153, 194, 347
MspR9I CCNGG 2 cut(s) 194, 195
MunI CAATTG 1 cut(s) 319
MvnI CGCG 4 cut(s) 129, 148, 331, 355
MwoI GCNNNNNNNGC 4 cut(s) 120, 129, 135, 352
NaeI GCCGGC 1 cut(s) 154
NciI CCSGG 2 cut(s) 194, 195
NdeII GATC 2 cut(s) 36, 88
NgoMIV GCCGGC 1 cut(s) 152
NlaIII CATG 1 cut(s) 246
NlaIV GGNNCC 4 cut(s) 38, 84, 85, 304
PacI TTAATTAA 1 cut(s) 252
PaeR7I CTCGAG 1 cut(s) 118
PcsI WCGNNNNNNNCGW 1 cut(s) 211
PdiI GCCGGC 1 cut(s) 154
PfeI GAWTC 2 cut(s) 235, 311
PkrI GCNGC 5 cut(s) 65, 116, 131, 147, 370
PleI GAGTC 1 cut(s) 205
PpsI GAGTC 1 cut(s) 205
PpuMI RGGWCCY 1 cut(s) 83
Psp5II RGGWCCY 1 cut(s) 83
PspN4I GGNNCC 4 cut(s) 38, 84, 85, 304
PspPI GGNCC 2 cut(s) 83, 272
PspPPI RGGWCCY 1 cut(s) 83
PspXI VCTCGAGB 1 cut(s) 118
PsuI RGATCY 1 cut(s) 36
RsaI GTAC 1 cut(s) 223
RsaNI GTAC 1 cut(s) 222
RseI CAYNNNNRTG 1 cut(s) 267
SacII CCGCGG 1 cut(s) 130
SalI GTCGAC 1 cut(s) 208
SaqAI TTAA 3 cut(s) 248, 252, 285
SatI GCNGC 5 cut(s) 64, 115, 130, 146, 369
Sau3AI GATC 2 cut(s) 36, 88
Sau96I GGNCC 2 cut(s) 83, 272
SchI GAGTC 1 cut(s) 205
ScrFI CCNGG 2 cut(s) 194, 195
SduI GDGCHC 1 cut(s) 79
SetI ASST 2 cut(s) 48, 362
Sfr274I CTCGAG 1 cut(s) 118
Sfr303I CCGCGG 1 cut(s) 130
SgrBI CCGCGG 1 cut(s) 130
SinI GGWCC 2 cut(s) 83, 272
SlaI CTCGAG 1 cut(s) 118
SmaI CCCGGG 1 cut(s) 195
SmiMI CAYNNNNRTG 1 cut(s) 267
SmlI CTYRAG 1 cut(s) 118
SmoI CTYRAG 1 cut(s) 118
Sse9I AATT 3 cut(s) 249, 291, 319
SsiI CCGC 9 cut(s) 73, 127, 129, 138, 146, 156, 219, 278, 368
StyD4I CCNGG 2 cut(s) 192, 193
TaaI ACNGT 3 cut(s) 207, 307, 365
TaqI TCGA 3 cut(s) 119, 209, 214
TasI AATT 3 cut(s) 249, 291, 319
TauI GCSGC 3 cut(s) 132, 148, 371
TfiI GAWTC 2 cut(s) 235, 311
Tru1I TTAA 3 cut(s) 248, 252, 285
Tru9I TTAA 3 cut(s) 248, 252, 285
TseI GCWGC 2 cut(s) 63, 114
TspGWI ACGGA 3 cut(s) 29, 179, 239
TspMI CCCGGG 1 cut(s) 193
VpaK11BI GGWCC 2 cut(s) 83, 272
XhoI CTCGAG 1 cut(s) 118
XmaI CCCGGG 1 cut(s) 193
XmiI GTMKAC 1 cut(s) 209
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.