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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccBSI | CCGCTC | 1 cut(s) | 142 |
| AccI | GTMKAC | 2 cut(s) | 212, 294 |
| AccII | CGCG | 3 cut(s) | 133, 152, 257 |
| AciI | CCGC | 7 cut(s) | 71, 125, 131, 133, 142, 150, 340 |
| AclWI | GGATC | 2 cut(s) | 31, 44 |
| AcoI | YGGCCR | 1 cut(s) | 158 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 156, 317 |
| AgeI | ACCGGT | 1 cut(s) | 221 |
| AgsI | TTSAA | 1 cut(s) | 206 |
| AluBI | AGCT | 1 cut(s) | 363 |
| AluI | AGCT | 1 cut(s) | 363 |
| AlwI | GGATC | 2 cut(s) | 31, 44 |
| Ama87I | CYCGRG | 3 cut(s) | 47, 64, 119 |
| AoxI | GGCC | 2 cut(s) | 86, 158 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 223, 255 |
| AsiGI | ACCGGT | 1 cut(s) | 221 |
| AspLEI | GCGC | 1 cut(s) | 259 |
| AspS9I | GGNCC | 3 cut(s) | 81, 87, 169 |
| AsuC2I | CCSGG | 4 cut(s) | 85, 162, 173, 198 |
| AvaI | CYCGRG | 3 cut(s) | 47, 64, 119 |
| AvaII | GGWCC | 2 cut(s) | 81, 169 |
| BaeGI | GKGCMC | 1 cut(s) | 77 |
| BamHI | GGATCC | 1 cut(s) | 36 |
| BbsI | GAAGAC | 1 cut(s) | 356 |
| BceAI | ACGGC | 1 cut(s) | 340 |
| BcnI | CCSGG | 4 cut(s) | 85, 162, 173, 198 |
| BfaI | CTAG | 1 cut(s) | 371 |
| BisI | GCNGC | 3 cut(s) | 125, 134, 150 |
| BlsI | GCNGC | 3 cut(s) | 126, 135, 151 |
| Bme1390I | CCNGG | 4 cut(s) | 85, 162, 173, 198 |
| Bme18I | GGWCC | 2 cut(s) | 81, 169 |
| BmeT110I | CYCGRG | 3 cut(s) | 47, 64, 119 |
| BmgT120I | GGNCC | 3 cut(s) | 81, 87, 169 |
| BmiI | GGNNCC | 3 cut(s) | 38, 82, 83 |
| BmrFI | CCNGG | 4 cut(s) | 85, 162, 173, 198 |
| BoxI | GACNNNNGTC | 1 cut(s) | 371 |
| BpiI | GAAGAC | 1 cut(s) | 356 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 352, 384 |
| BpuMI | CCSGG | 4 cut(s) | 85, 162, 173, 198 |
| BsaJI | CCNNGG | 5 cut(s) | 46, 131, 161, 196, 316 |
| BsaWI | WCCGGW | 1 cut(s) | 221 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 156, 317 |
| Bse118I | RCCGGY | 2 cut(s) | 156, 221 |
| BseDI | CCNNGG | 5 cut(s) | 46, 131, 161, 196, 316 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 156, 317 |
| BseSI | GKGCMC | 1 cut(s) | 77 |
| BseX3I | CGGCCG | 1 cut(s) | 158 |
| Bsh1236I | CGCG | 3 cut(s) | 133, 152, 257 |
| Bsh1285I | CGRYCG | 2 cut(s) | 161, 212 |
| BshFI | GGCC | 2 cut(s) | 88, 160 |
| BshTI | ACCGGT | 1 cut(s) | 221 |
| BsiEI | CGRYCG | 2 cut(s) | 161, 212 |
| BsiHKCI | CYCGRG | 3 cut(s) | 47, 64, 119 |
| BsiSI | CCGG | 6 cut(s) | 85, 157, 161, 172, 198, 222 |
| BslFI | GGGAC | 3 cut(s) | 67, 178, 272 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 156, 317 |
| BsmFI | GGGAC | 3 cut(s) | 67, 178, 272 |
| BsnI | GGCC | 2 cut(s) | 88, 160 |
| BsoBI | CYCGRG | 3 cut(s) | 47, 64, 119 |
| Bsp1286I | GDGCHC | 1 cut(s) | 77 |
| Bsp143I | GATC | 1 cut(s) | 36 |
| BspACI | CCGC | 7 cut(s) | 71, 125, 131, 133, 142, 150, 340 |
| BspANI | GGCC | 2 cut(s) | 88, 160 |
| BspFNI | CGCG | 3 cut(s) | 133, 152, 257 |
| BspLI | GGNNCC | 3 cut(s) | 38, 82, 83 |
| BspPI | GGATC | 2 cut(s) | 31, 44 |
| BsrBI | CCGCTC | 1 cut(s) | 142 |
| BsrFI | RCCGGY | 2 cut(s) | 156, 221 |
| BssAI | RCCGGY | 2 cut(s) | 156, 221 |
| BssECI | CCNNGG | 5 cut(s) | 46, 131, 161, 196, 316 |
| BssMI | GATC | 1 cut(s) | 36 |
| BssT1I | CCWWGG | 1 cut(s) | 316 |
| Bst4CI | ACNGT | 2 cut(s) | 210, 286 |
| BstC8I | GCNNGC | 4 cut(s) | 73, 154, 158, 329 |
| BstDSI | CCRYGG | 1 cut(s) | 131 |
| BstFNI | CGCG | 3 cut(s) | 133, 152, 257 |
| BstHHI | GCGC | 1 cut(s) | 259 |
| BstKTI | GATC | 1 cut(s) | 39 |
| BstMBI | GATC | 1 cut(s) | 36 |
| BstMCI | CGRYCG | 2 cut(s) | 161, 212 |
| BstMWI | GCNNNNNNNGC | 5 cut(s) | 124, 130, 133, 139, 337 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 371 |
| BstSCI | CCNGG | 4 cut(s) | 83, 160, 171, 196 |
| BstSLI | GKGCMC | 1 cut(s) | 77 |
| BstUI | CGCG | 3 cut(s) | 133, 152, 257 |
| BstV2I | GAAGAC | 1 cut(s) | 356 |
| BstX2I | RGATCY | 1 cut(s) | 36 |
| BstYI | RGATCY | 1 cut(s) | 36 |
| BstZI | CGGCCG | 1 cut(s) | 158 |
| BsuRI | GGCC | 2 cut(s) | 88, 160 |
| BtgI | CCRYGG | 1 cut(s) | 131 |
| Cac8I | GCNNGC | 4 cut(s) | 73, 154, 158, 329 |
| CfoI | GCGC | 1 cut(s) | 259 |
| Cfr10I | RCCGGY | 2 cut(s) | 156, 221 |
| Cfr13I | GGNCC | 3 cut(s) | 81, 87, 169 |
| Cfr42I | CCGCGG | 1 cut(s) | 134 |
| CpoI | CGGWCCG | 1 cut(s) | 169 |
| CseI | GACGC | 1 cut(s) | 263 |
| CspAI | ACCGGT | 1 cut(s) | 221 |
| CspI | CGGWCCG | 1 cut(s) | 169 |
| CviAII | CATG | 1 cut(s) | 260 |
| CviJI | RGCY | 9 cut(s) | 63, 88, 102, 124, 160, 191, 228, 327, 363 |
| CviKI_1 | RGCY | 9 cut(s) | 63, 88, 102, 124, 160, 191, 228, 327, 363 |
| DpnI | GATC | 1 cut(s) | 38 |
| DpnII | GATC | 1 cut(s) | 36 |
| EaeI | YGGCCR | 1 cut(s) | 158 |
| EagI | CGGCCG | 1 cut(s) | 158 |
| EclXI | CGGCCG | 1 cut(s) | 158 |
| Eco130I | CCWWGG | 1 cut(s) | 316 |
| Eco47I | GGWCC | 2 cut(s) | 81, 169 |
| Eco52I | CGGCCG | 1 cut(s) | 158 |
| Eco88I | CYCGRG | 3 cut(s) | 47, 64, 119 |
| EcoO109I | RGGNCCY | 1 cut(s) | 81 |
| EcoT14I | CCWWGG | 1 cut(s) | 316 |
| ErhI | CCWWGG | 1 cut(s) | 316 |
| FaeI | CATG | 1 cut(s) | 263 |
| FaiI | YATR | 1 cut(s) | 261 |
| FaqI | GGGAC | 3 cut(s) | 67, 178, 272 |
| FatI | CATG | 1 cut(s) | 259 |
| FauI | CCCGC | 3 cut(s) | 64, 135, 333 |
| FblI | GTMKAC | 2 cut(s) | 212, 294 |
| Fnu4HI | GCNGC | 3 cut(s) | 125, 134, 150 |
| Fsp4HI | GCNGC | 3 cut(s) | 125, 134, 150 |
| FspBI | CTAG | 1 cut(s) | 371 |
| GlaI | GCGC | 1 cut(s) | 258 |
| GluI | GCNGC | 3 cut(s) | 125, 134, 150 |
| HaeIII | GGCC | 2 cut(s) | 88, 160 |
| HapII | CCGG | 6 cut(s) | 85, 157, 161, 172, 198, 222 |
| HgaI | GACGC | 1 cut(s) | 263 |
| HhaI | GCGC | 1 cut(s) | 259 |
| Hin1II | CATG | 1 cut(s) | 263 |
| Hin6I | GCGC | 1 cut(s) | 257 |
| HinP1I | GCGC | 1 cut(s) | 257 |
| HincII | GTYRAC | 1 cut(s) | 213 |
| HindII | GTYRAC | 1 cut(s) | 213 |
| HinfI | GANTC | 4 cut(s) | 214, 277, 334, 367 |
| HpaII | CCGG | 6 cut(s) | 85, 157, 161, 172, 198, 222 |
| Hpy166II | GTNNAC | 3 cut(s) | 113, 213, 295 |
| Hpy188I | TCNGA | 1 cut(s) | 377 |
| Hpy188III | TCNNGA | 1 cut(s) | 49 |
| Hpy8I | GTNNAC | 3 cut(s) | 113, 213, 295 |
| Hpy99I | CGWCG | 1 cut(s) | 101 |
| HpyAV | CCTTC | 1 cut(s) | 193 |
| HpyCH4III | ACNGT | 2 cut(s) | 210, 286 |
| HpyCH4V | TGCA | 1 cut(s) | 331 |
| HpyF10VI | GCNNNNNNNGC | 5 cut(s) | 124, 130, 133, 139, 337 |
| Hsp92II | CATG | 1 cut(s) | 263 |
| HspAI | GCGC | 1 cut(s) | 257 |
| KflI | GGGWCCC | 1 cut(s) | 81 |
| KroI | GCCGGC | 1 cut(s) | 156 |
| KroNI | GCCGGC | 1 cut(s) | 158 |
| KspI | CCGCGG | 1 cut(s) | 134 |
| Kzo9I | GATC | 1 cut(s) | 36 |
| LmnI | GCTCC | 1 cut(s) | 185 |
| LpnPI | CCDG | 7 cut(s) | 98, 170, 174, 185, 211, 235, 315 |
| MaeI | CTAG | 1 cut(s) | 371 |
| MaeIII | GTNAC | 2 cut(s) | 41, 251 |
| MalI | GATC | 1 cut(s) | 38 |
| MbiI | CCGCTC | 1 cut(s) | 142 |
| MboI | GATC | 1 cut(s) | 36 |
| MboII | GAAGA | 1 cut(s) | 361 |
| MflI | RGATCY | 1 cut(s) | 36 |
| MhlI | GDGCHC | 1 cut(s) | 77 |
| MluCI | AATT | 1 cut(s) | 246 |
| MlyI | GAGTC | 2 cut(s) | 208, 361 |
| MnlI | CCTC | 3 cut(s) | 56, 60, 246 |
| MroNI | GCCGGC | 1 cut(s) | 156 |
| MseI | TTAA | 1 cut(s) | 270 |
| MspA1I | CMGCKG | 2 cut(s) | 133, 340 |
| MspI | CCGG | 6 cut(s) | 85, 157, 161, 172, 198, 222 |
| MspR9I | CCNGG | 4 cut(s) | 85, 162, 173, 198 |
| MvnI | CGCG | 3 cut(s) | 133, 152, 257 |
| MwoI | GCNNNNNNNGC | 5 cut(s) | 124, 130, 133, 139, 337 |
| NaeI | GCCGGC | 1 cut(s) | 158 |
| NciI | CCSGG | 4 cut(s) | 85, 162, 173, 198 |
| NdeII | GATC | 1 cut(s) | 36 |
| NgoMIV | GCCGGC | 1 cut(s) | 156 |
| NlaIII | CATG | 1 cut(s) | 263 |
| NlaIV | GGNNCC | 3 cut(s) | 38, 82, 83 |
| NmuCI | GTSAC | 1 cut(s) | 251 |
| PaeR7I | CTCGAG | 2 cut(s) | 64, 119 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 214 |
| PdiI | GCCGGC | 1 cut(s) | 158 |
| PfeI | GAWTC | 2 cut(s) | 277, 334 |
| PinAI | ACCGGT | 1 cut(s) | 221 |
| PkrI | GCNGC | 3 cut(s) | 126, 135, 151 |
| PleI | GAGTC | 2 cut(s) | 208, 361 |
| PpsI | GAGTC | 2 cut(s) | 208, 361 |
| PpuMI | RGGWCCY | 1 cut(s) | 81 |
| PshAI | GACNNNNGTC | 1 cut(s) | 371 |
| Psp5II | RGGWCCY | 1 cut(s) | 81 |
| PspN4I | GGNNCC | 3 cut(s) | 38, 82, 83 |
| PspPI | GGNCC | 3 cut(s) | 81, 87, 169 |
| PspPPI | RGGWCCY | 1 cut(s) | 81 |
| PspXI | VCTCGAGB | 2 cut(s) | 64, 119 |
| PsuI | RGATCY | 1 cut(s) | 36 |
| Rsr2I | CGGWCCG | 1 cut(s) | 169 |
| RsrII | CGGWCCG | 1 cut(s) | 169 |
| SacII | CCGCGG | 1 cut(s) | 134 |
| SalI | GTCGAC | 1 cut(s) | 211 |
| SaqAI | TTAA | 1 cut(s) | 270 |
| SatI | GCNGC | 3 cut(s) | 125, 134, 150 |
| Sau3AI | GATC | 1 cut(s) | 36 |
| Sau96I | GGNCC | 3 cut(s) | 81, 87, 169 |
| SchI | GAGTC | 2 cut(s) | 208, 361 |
| ScrFI | CCNGG | 4 cut(s) | 85, 162, 173, 198 |
| SduI | GDGCHC | 1 cut(s) | 77 |
| SetI | ASST | 2 cut(s) | 48, 365 |
| Sfr274I | CTCGAG | 2 cut(s) | 64, 119 |
| Sfr303I | CCGCGG | 1 cut(s) | 134 |
| SgrBI | CCGCGG | 1 cut(s) | 134 |
| SinI | GGWCC | 2 cut(s) | 81, 169 |
| SlaI | CTCGAG | 2 cut(s) | 64, 119 |
| SmlI | CTYRAG | 2 cut(s) | 64, 119 |
| SmoI | CTYRAG | 2 cut(s) | 64, 119 |
| Sse9I | AATT | 1 cut(s) | 246 |
| SsiI | CCGC | 7 cut(s) | 71, 125, 131, 133, 142, 150, 340 |
| SspMI | CTAG | 1 cut(s) | 371 |
| StyD4I | CCNGG | 4 cut(s) | 83, 160, 171, 196 |
| StyI | CCWWGG | 1 cut(s) | 316 |
| TaaI | ACNGT | 2 cut(s) | 210, 286 |
| TaqI | TCGA | 4 cut(s) | 65, 120, 212, 217 |
| TasI | AATT | 1 cut(s) | 246 |
| TauI | GCSGC | 3 cut(s) | 127, 136, 152 |
| TfiI | GAWTC | 2 cut(s) | 277, 334 |
| Tru1I | TTAA | 1 cut(s) | 270 |
| Tru9I | TTAA | 1 cut(s) | 270 |
| TseFI | GTSAC | 1 cut(s) | 251 |
| Tsp45I | GTSAC | 1 cut(s) | 251 |
| TspDTI | ATGAA | 1 cut(s) | 276 |
| TspGWI | ACGGA | 2 cut(s) | 29, 182 |
| VpaK11BI | GGWCC | 2 cut(s) | 81, 169 |
| XhoI | CTCGAG | 2 cut(s) | 64, 119 |
| XmiI | GTMKAC | 2 cut(s) | 212, 294 |
| XspI | CTAG | 1 cut(s) | 371 |