Rroxscaffold_6G00387840

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000006
OG0000104
Physical Location & Seq
Forward (+)
75683 .. 76994
1312 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_6G00387840.1

Sequence Viewer

Length: 525 bp
ATGAGCTCAACGAGAACAAATCTCGTGTGGAACAAAAGGGTAAAAGCTCGTTTGATTCTCGATTTCCGTACGAATACGAACCGTGAAAGCGTGGCCTATCGATCCTTTAGACCTTTGGAATTTAAAGCTAGAGGTGTCGAAAAGTTACCACAGGATAATCGGCTTCGTGGCAGCCAAGCGTTCATAGCGACGTTGCTTTTTGATCCTTCGATGTCGGCTCTTCCTATCATTGTGAAGCCCAAGGCTTGCCAAGACAATGCCAAGGCTAGGCAATGCCATGGCCGTCACCACCATGGTAGGCCACTATCCTACCATCGAAAGTTGATAGGCGTATATTTGAATGATGCGTCGCCAAAGCACAAAGGCCGTGCGATCCGTCGAGTTATCATGAATCATCAATACAACGGGCGAGCCCGCGTTGAAGGCTATGCAATGTCAAGCCAAGGCTTGGCAAGACAATGCCAAGGCTTGCTAGCGAGGCTAATGCAATGCCATGGCCGACAGAGGCTTGCTAGCGAAGGCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

174

Amino Acids

19.89

Weight (kDa)

11.29

Isoelectric Point (pI)

46.71

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000104)

Species Orthologous Gene IDs
pyrus_communis pycom2246g00050 pycom2246g00060 pycom2246g00070 pycom2246g00100 pycom2246g00170 pycom2575g00020 pycom520g01350
rosa_roxburghii Rroxscaffold_102G00450880 Rroxscaffold_102G00450940 Rroxscaffold_103G00450570 Rroxscaffold_104G00444660 Rroxscaffold_104G00444710 Rroxscaffold_104G00444740 Rroxscaffold_104G00444800 Rroxscaffold_104G00444860 Rroxscaffold_105G00447090 Rroxscaffold_105G00447190 Rroxscaffold_105G00447230 Rroxscaffold_106G00451430 Rroxscaffold_107G00442440 Rroxscaffold_107G00442550 Rroxscaffold_107G00442640 Rroxscaffold_107G00442690 Rroxscaffold_111G00451560 Rroxscaffold_112G00451580 Rroxscaffold_113G00451620 Rroxscaffold_115G00451690 Rroxscaffold_118G00451780 Rroxscaffold_122G00451870 Rroxscaffold_123G00451910 Rroxscaffold_124G00451960 Rroxscaffold_128G00452050 Rroxscaffold_12G00450640 Rroxscaffold_131G00452100 Rroxscaffold_132G00452130 Rroxscaffold_138G00452190 Rroxscaffold_13G00448670 Rroxscaffold_14G00441890 Rroxscaffold_14G00441960 Rroxscaffold_14G00442010 Rroxscaffold_14G00442070 Rroxscaffold_15G00447460 Rroxscaffold_15G00447510 Rroxscaffold_15G00447580 Rroxscaffold_162G00450750 Rroxscaffold_17G00435460 Rroxscaffold_17G00435510 Rroxscaffold_17G00435570 Rroxscaffold_17G00435640 Rroxscaffold_17G00435910 Rroxscaffold_18G00446090 Rroxscaffold_18G00446110 Rroxscaffold_18G00446170 Rroxscaffold_19G00448930 Rroxscaffold_1G00000010 Rroxscaffold_1G00000090 Rroxscaffold_1G00000130 Rroxscaffold_20G00445030 Rroxscaffold_20G00445040 Rroxscaffold_20G00445070 Rroxscaffold_20G00445110 Rroxscaffold_21G00439440 Rroxscaffold_21G00439460 Rroxscaffold_21G00439470 Rroxscaffold_21G00439520 Rroxscaffold_21G00439570 Rroxscaffold_21G00439660 Rroxscaffold_22G00439850 Rroxscaffold_22G00439990 Rroxscaffold_22G00440030 Rroxscaffold_25G00450140 Rroxscaffold_25G00450170 Rroxscaffold_26G00447770 Rroxscaffold_27G00446650 Rroxscaffold_29G00441730 Rroxscaffold_29G00441740 Rroxscaffold_29G00441760 Rroxscaffold_29G00441780 Rroxscaffold_29G00441830 Rroxscaffold_29G00441870 Rroxscaffold_30G00449490 Rroxscaffold_30G00449510 Rroxscaffold_31G00438130 Rroxscaffold_31G00438170 Rroxscaffold_31G00438270 Rroxscaffold_32G00442790 Rroxscaffold_32G00442800 Rroxscaffold_32G00442840 Rroxscaffold_33G00439700 Rroxscaffold_33G00439710 Rroxscaffold_34G00443170 Rroxscaffold_34G00443210 Rroxscaffold_34G00443280 Rroxscaffold_34G00443310 Rroxscaffold_35G00441010 Rroxscaffold_35G00441120 Rroxscaffold_35G00441180 Rroxscaffold_35G00441260 Rroxscaffold_35G00441290 Rroxscaffold_36G00440070 Rroxscaffold_36G00440110 Rroxscaffold_36G00440140 Rroxscaffold_36G00440190 Rroxscaffold_37G00445180 Rroxscaffold_37G00445190 Rroxscaffold_37G00445230 Rroxscaffold_37G00445240 Rroxscaffold_37G00445270 Rroxscaffold_38G00444450 Rroxscaffold_38G00444530 Rroxscaffold_38G00444570 Rroxscaffold_38G00444600 Rroxscaffold_38G00444620 Rroxscaffold_39G00448260 Rroxscaffold_40G00447720 Rroxscaffold_43G00449810 Rroxscaffold_43G00449840 Rroxscaffold_43G00449900 Rroxscaffold_44G00440460 Rroxscaffold_44G00440470 Rroxscaffold_44G00440510 Rroxscaffold_44G00440600 Rroxscaffold_44G00440640 Rroxscaffold_45G00438810 Rroxscaffold_45G00438840 Rroxscaffold_45G00438870 Rroxscaffold_45G00438890 Rroxscaffold_45G00438980 Rroxscaffold_46G00448720 Rroxscaffold_46G00448740 Rroxscaffold_47G00443950 Rroxscaffold_47G00443980 Rroxscaffold_47G00444000 Rroxscaffold_47G00444090 Rroxscaffold_48G00448430 Rroxscaffold_48G00448470 Rroxscaffold_48G00448510 Rroxscaffold_49G00438600 Rroxscaffold_49G00438620 Rroxscaffold_49G00438680 Rroxscaffold_49G00438710 Rroxscaffold_49G00438740 Rroxscaffold_49G00438780 Rroxscaffold_50G00444160 Rroxscaffold_50G00444260 Rroxscaffold_50G00444290 Rroxscaffold_50G00444370 Rroxscaffold_50G00444400 Rroxscaffold_53G00449700 Rroxscaffold_53G00449730 Rroxscaffold_53G00449740 Rroxscaffold_54G00443410 Rroxscaffold_54G00443460 Rroxscaffold_54G00443490 Rroxscaffold_54G00443530 Rroxscaffold_54G00443580 Rroxscaffold_54G00443610 Rroxscaffold_54G00443670 Rroxscaffold_55G00450070 Rroxscaffold_55G00450130 Rroxscaffold_56G00450950 Rroxscaffold_58G00449000 Rroxscaffold_58G00449050 Rroxscaffold_59G00442150 Rroxscaffold_59G00442180 Rroxscaffold_59G00442250 Rroxscaffold_59G00442270 Rroxscaffold_59G00442280 Rroxscaffold_60G00448270 Rroxscaffold_60G00448290 Rroxscaffold_60G00448330 Rroxscaffold_60G00448400 Rroxscaffold_61G00449970 Rroxscaffold_62G00437930 Rroxscaffold_62G00438030 Rroxscaffold_64G00450690 Rroxscaffold_64G00450700 Rroxscaffold_65G00445280 Rroxscaffold_65G00445350 Rroxscaffold_65G00445390 Rroxscaffold_66G00437570 Rroxscaffold_66G00437600 Rroxscaffold_66G00437620 Rroxscaffold_66G00437690 Rroxscaffold_66G00437730 Rroxscaffold_66G00437770 Rroxscaffold_66G00437860 Rroxscaffold_68G00447000 Rroxscaffold_68G00447040 Rroxscaffold_69G00446680 Rroxscaffold_69G00446780 Rroxscaffold_69G00446790 Rroxscaffold_69G00446810 Rroxscaffold_6G00387760 Rroxscaffold_6G00387790 Rroxscaffold_6G00387830 Rroxscaffold_6G00387840 Rroxscaffold_70G00446290 Rroxscaffold_70G00446390 Rroxscaffold_71G00445730 Rroxscaffold_71G00445750 Rroxscaffold_72G00449340 Rroxscaffold_72G00449380 Rroxscaffold_73G00439090 Rroxscaffold_73G00439120 Rroxscaffold_73G00439190 Rroxscaffold_73G00439210 Rroxscaffold_73G00439250 Rroxscaffold_74G00442890 Rroxscaffold_74G00442960 Rroxscaffold_75G00447280 Rroxscaffold_75G00447300 Rroxscaffold_75G00447340 Rroxscaffold_75G00447390 Rroxscaffold_75G00447410 Rroxscaffold_75G00447440 Rroxscaffold_76G00448590 Rroxscaffold_78G00449630 Rroxscaffold_78G00449640 Rroxscaffold_79G00450250 Rroxscaffold_80G00450280 Rroxscaffold_80G00450300 Rroxscaffold_80G00450310 Rroxscaffold_81G00450490 Rroxscaffold_82G00450810 Rroxscaffold_86G00451260 Rroxscaffold_87G00451290 Rroxscaffold_87G00451300 Rroxscaffold_87G00451320 Rroxscaffold_88G00451390 Rroxscaffold_90G00448810 Rroxscaffold_91G00442980 Rroxscaffold_91G00443040 Rroxscaffold_92G00446460 Rroxscaffold_92G00446490 Rroxscaffold_92G00446500 Rroxscaffold_92G00446520 Rroxscaffold_92G00446540 Rroxscaffold_92G00446560 Rroxscaffold_93G00440970 Rroxscaffold_93G00440990 Rroxscaffold_94G00445800 Rroxscaffold_94G00445870 Rroxscaffold_94G00445950 Rroxscaffold_94G00445990 Rroxscaffold_95G00449230 Rroxscaffold_95G00449260 Rroxscaffold_95G00449270 Rroxscaffold_96G00449080 Rroxscaffold_97G00442330 Rroxscaffold_97G00442350 Rroxscaffold_97G00442360 Rroxscaffold_98G00451340 Rroxscaffold_99G00451190 Rroxscaffold_99G00451210

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 448
AccII CGCG 1 cut(s) 417
AciI CCGC 1 cut(s) 415
AclWI GGATC 3 cut(s) 96, 197, 367
AcoI YGGCCR 2 cut(s) 280, 496
AcsI RAATTY 1 cut(s) 119
AfaI GTAC 1 cut(s) 70
AfiI CCNNNNNNNGG 2 cut(s) 267, 448
AgsI TTSAA 2 cut(s) 340, 422
AluBI AGCT 3 cut(s) 6, 47, 128
AluI AGCT 3 cut(s) 6, 47, 128
Alw21I GWGCWC 1 cut(s) 8
AlwI GGATC 3 cut(s) 96, 197, 367
AoxI GGCC 5 cut(s) 93, 280, 299, 364, 496
ApeKI GCWGC 1 cut(s) 171
ApoI RAATTY 1 cut(s) 119
AsuHPI GGTGA 1 cut(s) 278
AsuNHI GCTAGC 2 cut(s) 472, 512
BanII GRGCYC 2 cut(s) 8, 415
BauI CACGAG 1 cut(s) 23
Bbv12I GWGCWC 1 cut(s) 8
BbvI GCAGC 1 cut(s) 183
BccI CCATC 1 cut(s) 321
BceAI ACGGC 2 cut(s) 267, 351
BcgI CGANNNNNNTGC 2 cut(s) 466, 500
BfaI CTAG 4 cut(s) 129, 267, 473, 513
BisI GCNGC 1 cut(s) 172
BlsI GCNGC 1 cut(s) 173
BmsI GCATC 1 cut(s) 334
BmtI GCTAGC 2 cut(s) 476, 516
Bsa29I ATCGAT 1 cut(s) 100
BsaJI CCNNGG 7 cut(s) 240, 261, 277, 292, 442, 463, 493
Bsc4I CCNNNNNNNGG 2 cut(s) 267, 448
Bse3DI GCAATG 3 cut(s) 278, 438, 494
BseCI ATCGAT 1 cut(s) 100
BseDI CCNNGG 7 cut(s) 240, 261, 277, 292, 442, 463, 493
BseLI CCNNNNNNNGG 2 cut(s) 267, 448
BseMI GCAATG 3 cut(s) 278, 438, 494
BseXI GCAGC 1 cut(s) 183
Bsh1236I CGCG 1 cut(s) 417
BshFI GGCC 5 cut(s) 95, 282, 301, 366, 498
BshVI ATCGAT 1 cut(s) 100
BsiHKAI GWGCWC 1 cut(s) 8
BsiWI CGTACG 1 cut(s) 68
BslI CCNNNNNNNGG 2 cut(s) 267, 448
BsnI GGCC 5 cut(s) 95, 282, 301, 366, 498
Bsp1286I GDGCHC 2 cut(s) 8, 415
Bsp143I GATC 3 cut(s) 101, 202, 372
Bsp19I CCATGG 3 cut(s) 277, 292, 493
BspACI CCGC 1 cut(s) 415
BspANI GGCC 5 cut(s) 95, 282, 301, 366, 498
BspDI ATCGAT 1 cut(s) 100
BspFNI CGCG 1 cut(s) 417
BspHI TCATGA 1 cut(s) 387
BspOI GCTAGC 2 cut(s) 476, 516
BspPI GGATC 3 cut(s) 96, 197, 367
BspQI GCTCTTC 1 cut(s) 225
BsrDI GCAATG 3 cut(s) 278, 438, 494
BssECI CCNNGG 7 cut(s) 240, 261, 277, 292, 442, 463, 493
BssMI GATC 3 cut(s) 101, 202, 372
BssSI CACGAG 1 cut(s) 23
BssT1I CCWWGG 7 cut(s) 240, 261, 277, 292, 442, 463, 493
Bst2BI CACGAG 1 cut(s) 23
Bst4CI ACNGT 1 cut(s) 83
Bst6I CTCTTC 1 cut(s) 225
BstC8I GCNNGC 7 cut(s) 247, 411, 415, 470, 474, 510, 514
BstDSI CCRYGG 3 cut(s) 277, 292, 493
BstFNI CGCG 1 cut(s) 417
BstKTI GATC 3 cut(s) 104, 205, 375
BstMBI GATC 3 cut(s) 101, 202, 372
BstMWI GCNNNNNNNGC 3 cut(s) 185, 423, 478
BstUI CGCG 1 cut(s) 417
BstV1I GCAGC 1 cut(s) 183
Bsu15I ATCGAT 1 cut(s) 100
BsuRI GGCC 5 cut(s) 95, 282, 301, 366, 498
BsuTUI ATCGAT 1 cut(s) 100
BtgI CCRYGG 3 cut(s) 277, 292, 493
Cac8I GCNNGC 7 cut(s) 247, 411, 415, 470, 474, 510, 514
CciI TCATGA 1 cut(s) 387
ClaI ATCGAT 1 cut(s) 100
CseI GACGC 1 cut(s) 336
Csp6I GTAC 1 cut(s) 69
CviAII CATG 4 cut(s) 278, 293, 388, 494
CviQI GTAC 1 cut(s) 69
DpnI GATC 3 cut(s) 103, 204, 374
DpnII GATC 3 cut(s) 101, 202, 372
DraI TTTAAA 1 cut(s) 124
EaeI YGGCCR 2 cut(s) 280, 496
Eam1104I CTCTTC 1 cut(s) 225
EarI CTCTTC 1 cut(s) 225
Ecl136II GAGCTC 1 cut(s) 6
Eco130I CCWWGG 7 cut(s) 240, 261, 277, 292, 442, 463, 493
Eco24I GRGCYC 2 cut(s) 8, 415
Eco53kI GAGCTC 1 cut(s) 6
EcoICRI GAGCTC 1 cut(s) 6
EcoT14I CCWWGG 7 cut(s) 240, 261, 277, 292, 442, 463, 493
EcoT38I GRGCYC 2 cut(s) 8, 415
ErhI CCWWGG 7 cut(s) 240, 261, 277, 292, 442, 463, 493
FaeI CATG 4 cut(s) 281, 296, 391, 497
FaiI YATR 7 cut(s) 185, 279, 294, 334, 389, 429, 495
FatI CATG 4 cut(s) 277, 292, 387, 493
FauI CCCGC 1 cut(s) 422
Fnu4HI GCNGC 1 cut(s) 172
FriOI GRGCYC 2 cut(s) 8, 415
Fsp4HI GCNGC 1 cut(s) 172
FspBI CTAG 4 cut(s) 129, 267, 473, 513
GluI GCNGC 1 cut(s) 172
HaeIII GGCC 5 cut(s) 95, 282, 301, 366, 498
HgaI GACGC 1 cut(s) 336
Hin1II CATG 4 cut(s) 281, 296, 391, 497
HinfI GANTC 2 cut(s) 55, 391
HphI GGTGA 1 cut(s) 278
Hpy188III TCNNGA 2 cut(s) 59, 388
Hpy99I CGWCG 3 cut(s) 193, 352, 381
HpyAV CCTTC 3 cut(s) 216, 416, 512
HpyCH4III ACNGT 1 cut(s) 83
HpyCH4IV ACGT 1 cut(s) 191
HpyCH4V TGCA 2 cut(s) 431, 487
HpyF10VI GCNNNNNNNGC 3 cut(s) 185, 423, 478
HpySE526I ACGT 1 cut(s) 191
Hsp92II CATG 4 cut(s) 281, 296, 391, 497
Kzo9I GATC 3 cut(s) 101, 202, 372
LguI GCTCTTC 1 cut(s) 225
LpnPI CCDG 1 cut(s) 137
Lsp1109I GCAGC 1 cut(s) 183
LweI GCATC 1 cut(s) 334
MaeI CTAG 4 cut(s) 129, 267, 473, 513
MaeII ACGT 1 cut(s) 191
MaeIII GTNAC 2 cut(s) 144, 284
MalI GATC 3 cut(s) 103, 204, 374
MboI GATC 3 cut(s) 101, 202, 372
MboII GAAGA 1 cut(s) 212
MhlI GDGCHC 2 cut(s) 8, 415
MluCI AATT 1 cut(s) 119
MnlI CCTC 3 cut(s) 125, 471, 498
MseI TTAA 1 cut(s) 123
MslI CAYNNNNRTG 1 cut(s) 291
MvnI CGCG 1 cut(s) 417
MwoI GCNNNNNNNGC 3 cut(s) 185, 423, 478
NcoI CCATGG 3 cut(s) 277, 292, 493
NdeII GATC 3 cut(s) 101, 202, 372
NheI GCTAGC 2 cut(s) 472, 512
NlaIII CATG 4 cut(s) 281, 296, 391, 497
NmuCI GTSAC 1 cut(s) 284
PagI TCATGA 1 cut(s) 387
PciSI GCTCTTC 1 cut(s) 225
PfeI GAWTC 2 cut(s) 55, 391
Pfl23II CGTACG 1 cut(s) 68
PflMI CCANNNNNTGG 1 cut(s) 448
PkrI GCNGC 1 cut(s) 173
Psp124BI GAGCTC 1 cut(s) 8
PspLI CGTACG 1 cut(s) 68
RsaI GTAC 1 cut(s) 70
RsaNI GTAC 1 cut(s) 69
RseI CAYNNNNRTG 1 cut(s) 291
SacI GAGCTC 1 cut(s) 8
SapI GCTCTTC 1 cut(s) 225
SaqAI TTAA 1 cut(s) 123
SatI GCNGC 1 cut(s) 172
Sau3AI GATC 3 cut(s) 101, 202, 372
SduI GDGCHC 2 cut(s) 8, 415
SetI ASST 6 cut(s) 8, 49, 115, 130, 136, 194
SfaNI GCATC 1 cut(s) 334
SmiMI CAYNNNNRTG 1 cut(s) 291
Sse9I AATT 1 cut(s) 119
SsiI CCGC 1 cut(s) 415
SspMI CTAG 4 cut(s) 129, 267, 473, 513
SstI GAGCTC 1 cut(s) 8
StyI CCWWGG 7 cut(s) 240, 261, 277, 292, 442, 463, 493
TaaI ACNGT 1 cut(s) 83
TaiI ACGT 1 cut(s) 194
TaqI TCGA 6 cut(s) 60, 100, 138, 209, 316, 379
TasI AATT 1 cut(s) 119
TfiI GAWTC 2 cut(s) 55, 391
Tru1I TTAA 1 cut(s) 123
Tru9I TTAA 1 cut(s) 123
TseFI GTSAC 1 cut(s) 284
TseI GCWGC 1 cut(s) 171
Tsp45I GTSAC 1 cut(s) 284
TspDTI ATGAA 2 cut(s) 172, 404
TspGWI ACGGA 2 cut(s) 56, 365
Van91I CCANNNNNTGG 1 cut(s) 448
XapI RAATTY 1 cut(s) 119
XspI CTAG 4 cut(s) 129, 267, 473, 513
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.