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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccBSI | CCGCTC | 1 cut(s) | 110 |
| AccII | CGCG | 4 cut(s) | 15, 70, 277, 291 |
| AccIII | TCCGGA | 1 cut(s) | 312 |
| AcoI | YGGCCR | 3 cut(s) | 111, 254, 339 |
| AfaI | GTAC | 1 cut(s) | 345 |
| AfiI | CCNNNNNNNGG | 6 cut(s) | 33, 34, 175, 227, 243, 256 |
| AflII | CTTAAG | 1 cut(s) | 8 |
| AgsI | TTSAA | 3 cut(s) | 150, 164, 307 |
| AjiI | CACGTC | 1 cut(s) | 273 |
| Alw21I | GWGCWC | 1 cut(s) | 267 |
| Alw26I | GTCTC | 1 cut(s) | 368 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 382 |
| Ama87I | CYCGRG | 1 cut(s) | 88 |
| Aor13HI | TCCGGA | 1 cut(s) | 312 |
| AoxI | GGCC | 6 cut(s) | 111, 166, 209, 254, 299, 339 |
| AscI | GGCGCGCC | 1 cut(s) | 289 |
| AspLEI | GCGC | 5 cut(s) | 7, 15, 70, 291, 293 |
| AspS9I | GGNCC | 3 cut(s) | 247, 300, 318 |
| AsuC2I | CCSGG | 6 cut(s) | 89, 90, 102, 222, 295, 338 |
| AsuHPI | GGTGA | 1 cut(s) | 383 |
| AvaI | CYCGRG | 1 cut(s) | 88 |
| AvaII | GGWCC | 2 cut(s) | 247, 318 |
| BaeGI | GKGCMC | 1 cut(s) | 52 |
| BanII | GRGCYC | 1 cut(s) | 102 |
| Bbv12I | GWGCWC | 1 cut(s) | 267 |
| BceAI | ACGGC | 6 cut(s) | 15, 30, 98, 211, 244, 326 |
| BcnI | CCSGG | 6 cut(s) | 89, 90, 102, 222, 295, 338 |
| BcoDI | GTCTC | 1 cut(s) | 368 |
| BfoI | RGCGCY | 1 cut(s) | 8 |
| BfrI | CTTAAG | 1 cut(s) | 8 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 36 |
| BglII | AGATCT | 1 cut(s) | 124 |
| BisI | GCNGC | 5 cut(s) | 71, 80, 111, 254, 299 |
| BlpI | GCTNAGC | 1 cut(s) | 232 |
| BlsI | GCNGC | 5 cut(s) | 72, 81, 112, 255, 300 |
| Bme1390I | CCNGG | 6 cut(s) | 89, 90, 102, 222, 295, 338 |
| Bme18I | GGWCC | 2 cut(s) | 247, 318 |
| BmeT110I | CYCGRG | 1 cut(s) | 88 |
| BmgBI | CACGTC | 1 cut(s) | 273 |
| BmgT120I | GGNCC | 3 cut(s) | 247, 300, 318 |
| BmiI | GGNNCC | 2 cut(s) | 185, 248 |
| BmrFI | CCNGG | 6 cut(s) | 89, 90, 102, 222, 295, 338 |
| BmsI | GCATC | 1 cut(s) | 365 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 232 |
| BpuMI | CCSGG | 6 cut(s) | 89, 90, 102, 222, 295, 338 |
| BsaI | GGTCTC | 1 cut(s) | 368 |
| BsaJI | CCNNGG | 4 cut(s) | 88, 89, 220, 367 |
| BsaWI | WCCGGW | 1 cut(s) | 312 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 99, 129, 231, 261 |
| Bsc4I | CCNNNNNNNGG | 6 cut(s) | 33, 34, 175, 227, 243, 256 |
| BseAI | TCCGGA | 1 cut(s) | 312 |
| BseDI | CCNNGG | 4 cut(s) | 88, 89, 220, 367 |
| BseLI | CCNNNNNNNGG | 6 cut(s) | 33, 34, 175, 227, 243, 256 |
| BseMII | CTCAG | 1 cut(s) | 246 |
| BsePI | GCGCGC | 1 cut(s) | 289 |
| BseSI | GKGCMC | 1 cut(s) | 52 |
| BseX3I | CGGCCG | 3 cut(s) | 111, 254, 339 |
| BsgI | GTGCAG | 1 cut(s) | 141 |
| Bsh1236I | CGCG | 4 cut(s) | 15, 70, 277, 291 |
| Bsh1285I | CGRYCG | 4 cut(s) | 77, 114, 257, 342 |
| BshFI | GGCC | 6 cut(s) | 113, 168, 211, 256, 301, 341 |
| BsiEI | CGRYCG | 4 cut(s) | 77, 114, 257, 342 |
| BsiHKAI | GWGCWC | 1 cut(s) | 267 |
| BsiHKCI | CYCGRG | 1 cut(s) | 88 |
| BsiSI | CCGG | 9 cut(s) | 89, 102, 222, 237, 257, 286, 295, 313, 338 |
| BslI | CCNNNNNNNGG | 6 cut(s) | 33, 34, 175, 227, 243, 256 |
| BsmAI | GTCTC | 1 cut(s) | 368 |
| BsnI | GGCC | 6 cut(s) | 113, 168, 211, 256, 301, 341 |
| Bso31I | GGTCTC | 1 cut(s) | 368 |
| BsoBI | CYCGRG | 1 cut(s) | 88 |
| Bsp1286I | GDGCHC | 3 cut(s) | 52, 102, 267 |
| Bsp13I | TCCGGA | 1 cut(s) | 312 |
| Bsp143I | GATC | 1 cut(s) | 124 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 232 |
| BspANI | GGCC | 6 cut(s) | 113, 168, 211, 256, 301, 341 |
| BspCNI | CTCAG | 1 cut(s) | 245 |
| BspEI | TCCGGA | 1 cut(s) | 312 |
| BspFNI | CGCG | 4 cut(s) | 15, 70, 277, 291 |
| BspLI | GGNNCC | 2 cut(s) | 185, 248 |
| BspQI | GCTCTTC | 1 cut(s) | 255 |
| BspTI | CTTAAG | 1 cut(s) | 8 |
| BspTNI | GGTCTC | 1 cut(s) | 368 |
| BsrBI | CCGCTC | 1 cut(s) | 110 |
| BssECI | CCNNGG | 4 cut(s) | 88, 89, 220, 367 |
| BssHII | GCGCGC | 1 cut(s) | 289 |
| BssMI | GATC | 1 cut(s) | 124 |
| BssT1I | CCWWGG | 1 cut(s) | 367 |
| Bst6I | CTCTTC | 2 cut(s) | 166, 255 |
| BstAFI | CTTAAG | 1 cut(s) | 8 |
| BstC8I | GCNNGC | 2 cut(s) | 213, 291 |
| BstDEI | CTNAG | 1 cut(s) | 232 |
| BstFNI | CGCG | 4 cut(s) | 15, 70, 277, 291 |
| BstH2I | RGCGCY | 1 cut(s) | 8 |
| BstHHI | GCGC | 5 cut(s) | 7, 15, 70, 291, 293 |
| BstKTI | GATC | 1 cut(s) | 127 |
| BstMAI | GTCTC | 1 cut(s) | 368 |
| BstMBI | GATC | 1 cut(s) | 124 |
| BstMCI | CGRYCG | 4 cut(s) | 77, 114, 257, 342 |
| BstMWI | GCNNNNNNNGC | 7 cut(s) | 36, 76, 79, 119, 262, 295, 333 |
| BstSCI | CCNGG | 6 cut(s) | 87, 88, 100, 220, 293, 336 |
| BstSLI | GKGCMC | 1 cut(s) | 52 |
| BstUI | CGCG | 4 cut(s) | 15, 70, 277, 291 |
| BstX2I | RGATCY | 1 cut(s) | 124 |
| BstYI | RGATCY | 1 cut(s) | 124 |
| BstZI | CGGCCG | 3 cut(s) | 111, 254, 339 |
| BsuRI | GGCC | 6 cut(s) | 113, 168, 211, 256, 301, 341 |
| BtrI | CACGTC | 1 cut(s) | 273 |
| Cac8I | GCNNGC | 2 cut(s) | 213, 291 |
| CaiI | CAGNNNCTG | 1 cut(s) | 382 |
| CfoI | GCGC | 5 cut(s) | 7, 15, 70, 291, 293 |
| Cfr13I | GGNCC | 3 cut(s) | 247, 300, 318 |
| Cfr9I | CCCGGG | 1 cut(s) | 88 |
| Csp6I | GTAC | 1 cut(s) | 344 |
| CviAII | CATG | 2 cut(s) | 188, 207 |
| CviQI | GTAC | 1 cut(s) | 344 |
| DdeI | CTNAG | 1 cut(s) | 232 |
| DpnI | GATC | 1 cut(s) | 126 |
| DpnII | GATC | 1 cut(s) | 124 |
| EaeI | YGGCCR | 3 cut(s) | 111, 254, 339 |
| EagI | CGGCCG | 3 cut(s) | 111, 254, 339 |
| Eam1104I | CTCTTC | 2 cut(s) | 166, 255 |
| EarI | CTCTTC | 2 cut(s) | 166, 255 |
| EciI | GGCGGA | 1 cut(s) | 120 |
| EclXI | CGGCCG | 3 cut(s) | 111, 254, 339 |
| Eco130I | CCWWGG | 1 cut(s) | 367 |
| Eco24I | GRGCYC | 1 cut(s) | 102 |
| Eco31I | GGTCTC | 1 cut(s) | 368 |
| Eco47I | GGWCC | 2 cut(s) | 247, 318 |
| Eco52I | CGGCCG | 3 cut(s) | 111, 254, 339 |
| Eco88I | CYCGRG | 1 cut(s) | 88 |
| EcoT14I | CCWWGG | 1 cut(s) | 367 |
| EcoT38I | GRGCYC | 1 cut(s) | 102 |
| ErhI | CCWWGG | 1 cut(s) | 367 |
| FaeI | CATG | 2 cut(s) | 191, 210 |
| FaiI | YATR | 4 cut(s) | 24, 189, 208, 350 |
| FatI | CATG | 2 cut(s) | 187, 206 |
| FauI | CCCGC | 1 cut(s) | 35 |
| Fnu4HI | GCNGC | 5 cut(s) | 71, 80, 111, 254, 299 |
| FriOI | GRGCYC | 1 cut(s) | 102 |
| Fsp4HI | GCNGC | 5 cut(s) | 71, 80, 111, 254, 299 |
| GlaI | GCGC | 5 cut(s) | 6, 14, 69, 290, 292 |
| GluI | GCNGC | 5 cut(s) | 71, 80, 111, 254, 299 |
| HaeII | RGCGCY | 1 cut(s) | 8 |
| HaeIII | GGCC | 6 cut(s) | 113, 168, 211, 256, 301, 341 |
| HapII | CCGG | 9 cut(s) | 89, 102, 222, 237, 257, 286, 295, 313, 338 |
| HhaI | GCGC | 5 cut(s) | 7, 15, 70, 291, 293 |
| Hin1II | CATG | 2 cut(s) | 191, 210 |
| Hin6I | GCGC | 5 cut(s) | 5, 13, 68, 289, 291 |
| HinP1I | GCGC | 5 cut(s) | 5, 13, 68, 289, 291 |
| HpaII | CCGG | 9 cut(s) | 89, 102, 222, 237, 257, 286, 295, 313, 338 |
| HphI | GGTGA | 1 cut(s) | 383 |
| Hpy166II | GTNNAC | 2 cut(s) | 193, 374 |
| Hpy188III | TCNNGA | 1 cut(s) | 313 |
| Hpy8I | GTNNAC | 2 cut(s) | 193, 374 |
| Hpy99I | CGWCG | 3 cut(s) | 36, 119, 277 |
| HpyAV | CCTTC | 1 cut(s) | 158 |
| HpyCH4IV | ACGT | 1 cut(s) | 272 |
| HpyCH4V | TGCA | 2 cut(s) | 122, 204 |
| HpyF10VI | GCNNNNNNNGC | 7 cut(s) | 36, 76, 79, 119, 262, 295, 333 |
| HpyF3I | CTNAG | 1 cut(s) | 232 |
| HpySE526I | ACGT | 1 cut(s) | 272 |
| Hsp92II | CATG | 2 cut(s) | 191, 210 |
| HspAI | GCGC | 5 cut(s) | 5, 13, 68, 289, 291 |
| Kpn2I | TCCGGA | 1 cut(s) | 312 |
| Kzo9I | GATC | 1 cut(s) | 124 |
| LguI | GCTCTTC | 1 cut(s) | 255 |
| LmnI | GCTCC | 1 cut(s) | 107 |
| LweI | GCATC | 1 cut(s) | 365 |
| MaeII | ACGT | 1 cut(s) | 272 |
| MaeIII | GTNAC | 1 cut(s) | 16 |
| MalI | GATC | 1 cut(s) | 126 |
| MbiI | CCGCTC | 1 cut(s) | 110 |
| MboI | GATC | 1 cut(s) | 124 |
| MboII | GAAGA | 2 cut(s) | 183, 272 |
| MflI | RGATCY | 1 cut(s) | 124 |
| MhlI | GDGCHC | 3 cut(s) | 52, 102, 267 |
| MnlI | CCTC | 5 cut(s) | 57, 167, 233, 309, 390 |
| MroI | TCCGGA | 1 cut(s) | 312 |
| MseI | TTAA | 1 cut(s) | 9 |
| MspA1I | CMGCKG | 1 cut(s) | 253 |
| MspCI | CTTAAG | 1 cut(s) | 8 |
| MspI | CCGG | 9 cut(s) | 89, 102, 222, 237, 257, 286, 295, 313, 338 |
| MspR9I | CCNGG | 6 cut(s) | 89, 90, 102, 222, 295, 338 |
| MvnI | CGCG | 4 cut(s) | 15, 70, 277, 291 |
| MwoI | GCNNNNNNNGC | 7 cut(s) | 36, 76, 79, 119, 262, 295, 333 |
| NciI | CCSGG | 6 cut(s) | 89, 90, 102, 222, 295, 338 |
| NdeII | GATC | 1 cut(s) | 124 |
| NlaIII | CATG | 2 cut(s) | 191, 210 |
| NlaIV | GGNNCC | 2 cut(s) | 185, 248 |
| NmuCI | GTSAC | 1 cut(s) | 16 |
| PalAI | GGCGCGCC | 1 cut(s) | 289 |
| PauI | GCGCGC | 1 cut(s) | 289 |
| PciSI | GCTCTTC | 1 cut(s) | 255 |
| PkrI | GCNGC | 5 cut(s) | 72, 81, 112, 255, 300 |
| PspN4I | GGNNCC | 2 cut(s) | 185, 248 |
| PspPI | GGNCC | 3 cut(s) | 247, 300, 318 |
| PstNI | CAGNNNCTG | 1 cut(s) | 382 |
| PsuI | RGATCY | 1 cut(s) | 124 |
| PteI | GCGCGC | 1 cut(s) | 289 |
| RsaI | GTAC | 1 cut(s) | 345 |
| RsaNI | GTAC | 1 cut(s) | 344 |
| SapI | GCTCTTC | 1 cut(s) | 255 |
| SaqAI | TTAA | 1 cut(s) | 9 |
| SatI | GCNGC | 5 cut(s) | 71, 80, 111, 254, 299 |
| Sau3AI | GATC | 1 cut(s) | 124 |
| Sau96I | GGNCC | 3 cut(s) | 247, 300, 318 |
| ScrFI | CCNGG | 6 cut(s) | 89, 90, 102, 222, 295, 338 |
| SduI | GDGCHC | 3 cut(s) | 52, 102, 267 |
| SetI | ASST | 6 cut(s) | 23, 185, 244, 275, 364, 373 |
| SfaNI | GCATC | 1 cut(s) | 365 |
| SgsI | GGCGCGCC | 1 cut(s) | 289 |
| SinI | GGWCC | 2 cut(s) | 247, 318 |
| SmaI | CCCGGG | 1 cut(s) | 90 |
| SmlI | CTYRAG | 1 cut(s) | 8 |
| SmoI | CTYRAG | 1 cut(s) | 8 |
| SspI | AATATT | 1 cut(s) | 146 |
| StyD4I | CCNGG | 6 cut(s) | 87, 88, 100, 220, 293, 336 |
| StyI | CCWWGG | 1 cut(s) | 367 |
| TaiI | ACGT | 1 cut(s) | 275 |
| TaqII | GACCGA | 1 cut(s) | 335 |
| TauI | GCSGC | 5 cut(s) | 73, 82, 113, 256, 301 |
| Tru1I | TTAA | 1 cut(s) | 9 |
| Tru9I | TTAA | 1 cut(s) | 9 |
| TseFI | GTSAC | 1 cut(s) | 16 |
| Tsp45I | GTSAC | 1 cut(s) | 16 |
| TspMI | CCCGGG | 1 cut(s) | 88 |
| Vha464I | CTTAAG | 1 cut(s) | 8 |
| VpaK11BI | GGWCC | 2 cut(s) | 247, 318 |
| XmaI | CCCGGG | 1 cut(s) | 88 |