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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccBSI | CCGCTC | 2 cut(s) | 109, 219 |
| AccI | GTMKAC | 1 cut(s) | 289 |
| AccII | CGCG | 4 cut(s) | 15, 70, 210, 229 |
| AclWI | GGATC | 2 cut(s) | 131, 160 |
| AcoI | YGGCCR | 3 cut(s) | 28, 110, 234 |
| AfaI | GTAC | 1 cut(s) | 303 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 33, 243 |
| AflII | CTTAAG | 1 cut(s) | 8 |
| AgsI | TTSAA | 1 cut(s) | 283 |
| AluBI | AGCT | 1 cut(s) | 202 |
| AluI | AGCT | 1 cut(s) | 202 |
| AlwI | GGATC | 2 cut(s) | 131, 160 |
| Ama87I | CYCGRG | 3 cut(s) | 197, 273, 293 |
| AoxI | GGCC | 3 cut(s) | 28, 110, 234 |
| ApeKI | GCWGC | 3 cut(s) | 79, 139, 202 |
| AspLEI | GCGC | 3 cut(s) | 7, 15, 70 |
| AspS9I | GGNCC | 2 cut(s) | 160, 350 |
| AsuC2I | CCSGG | 3 cut(s) | 238, 274, 275 |
| AsuHPI | GGTGA | 1 cut(s) | 200 |
| AvaI | CYCGRG | 3 cut(s) | 197, 273, 293 |
| AvaII | GGWCC | 2 cut(s) | 160, 350 |
| BaeGI | GKGCMC | 1 cut(s) | 155 |
| BanII | GRGCYC | 1 cut(s) | 52 |
| BbvI | GCAGC | 3 cut(s) | 66, 126, 189 |
| BccI | CCATC | 1 cut(s) | 341 |
| BceAI | ACGGC | 2 cut(s) | 15, 97 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 335, 369 |
| BcnI | CCSGG | 3 cut(s) | 238, 274, 275 |
| BfoI | RGCGCY | 1 cut(s) | 8 |
| BfrI | CTTAAG | 1 cut(s) | 8 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 36 |
| BisI | GCNGC | 8 cut(s) | 71, 80, 110, 140, 203, 211, 227, 234 |
| BlsI | GCNGC | 8 cut(s) | 72, 81, 111, 141, 204, 212, 228, 235 |
| Bme1390I | CCNGG | 3 cut(s) | 238, 274, 275 |
| Bme18I | GGWCC | 2 cut(s) | 160, 350 |
| BmeT110I | CYCGRG | 3 cut(s) | 197, 273, 293 |
| BmgT120I | GGNCC | 2 cut(s) | 160, 350 |
| BmiI | GGNNCC | 2 cut(s) | 161, 162 |
| BmrFI | CCNGG | 3 cut(s) | 238, 274, 275 |
| BpuMI | CCSGG | 3 cut(s) | 238, 274, 275 |
| BsaJI | CCNNGG | 2 cut(s) | 237, 273 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 98, 128 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 33, 243 |
| Bse118I | RCCGGY | 2 cut(s) | 26, 100 |
| Bse3DI | GCAATG | 2 cut(s) | 340, 375 |
| BseDI | CCNNGG | 2 cut(s) | 237, 273 |
| BseGI | GGATG | 1 cut(s) | 364 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 33, 243 |
| BseMI | GCAATG | 2 cut(s) | 340, 375 |
| BseSI | GKGCMC | 1 cut(s) | 155 |
| BseX3I | CGGCCG | 3 cut(s) | 28, 110, 234 |
| BseXI | GCAGC | 3 cut(s) | 66, 126, 189 |
| Bsh1236I | CGCG | 4 cut(s) | 15, 70, 210, 229 |
| Bsh1285I | CGRYCG | 5 cut(s) | 31, 77, 113, 237, 289 |
| BshFI | GGCC | 3 cut(s) | 30, 112, 236 |
| BsiEI | CGRYCG | 5 cut(s) | 31, 77, 113, 237, 289 |
| BsiHKCI | CYCGRG | 3 cut(s) | 197, 273, 293 |
| BsiSI | CCGG | 4 cut(s) | 27, 101, 237, 274 |
| BslFI | GGGAC | 2 cut(s) | 146, 255 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 33, 243 |
| BsmFI | GGGAC | 2 cut(s) | 146, 255 |
| BsnI | GGCC | 3 cut(s) | 30, 112, 236 |
| BsoBI | CYCGRG | 3 cut(s) | 197, 273, 293 |
| Bsp1286I | GDGCHC | 2 cut(s) | 52, 155 |
| Bsp143I | GATC | 2 cut(s) | 123, 165 |
| BspANI | GGCC | 3 cut(s) | 30, 112, 236 |
| BspFNI | CGCG | 4 cut(s) | 15, 70, 210, 229 |
| BspLI | GGNNCC | 2 cut(s) | 161, 162 |
| BspPI | GGATC | 2 cut(s) | 131, 160 |
| BspTI | CTTAAG | 1 cut(s) | 8 |
| BsrBI | CCGCTC | 2 cut(s) | 109, 219 |
| BsrDI | GCAATG | 2 cut(s) | 340, 375 |
| BsrFI | RCCGGY | 2 cut(s) | 26, 100 |
| BssAI | RCCGGY | 2 cut(s) | 26, 100 |
| BssECI | CCNNGG | 2 cut(s) | 237, 273 |
| BssMI | GATC | 2 cut(s) | 123, 165 |
| Bst4CI | ACNGT | 1 cut(s) | 287 |
| BstAFI | CTTAAG | 1 cut(s) | 8 |
| BstC8I | GCNNGC | 3 cut(s) | 102, 151, 231 |
| BstF5I | GGATG | 1 cut(s) | 364 |
| BstFNI | CGCG | 4 cut(s) | 15, 70, 210, 229 |
| BstH2I | RGCGCY | 1 cut(s) | 8 |
| BstHHI | GCGC | 3 cut(s) | 7, 15, 70 |
| BstKTI | GATC | 2 cut(s) | 126, 168 |
| BstMBI | GATC | 2 cut(s) | 123, 165 |
| BstMCI | CGRYCG | 5 cut(s) | 31, 77, 113, 237, 289 |
| BstMWI | GCNNNNNNNGC | 7 cut(s) | 36, 76, 79, 106, 118, 202, 216 |
| BstSCI | CCNGG | 3 cut(s) | 236, 272, 273 |
| BstSLI | GKGCMC | 1 cut(s) | 155 |
| BstUI | CGCG | 4 cut(s) | 15, 70, 210, 229 |
| BstV1I | GCAGC | 3 cut(s) | 66, 126, 189 |
| BstX2I | RGATCY | 1 cut(s) | 123 |
| BstYI | RGATCY | 1 cut(s) | 123 |
| BstZI | CGGCCG | 3 cut(s) | 28, 110, 234 |
| BsuRI | GGCC | 3 cut(s) | 30, 112, 236 |
| BtgZI | GCGATG | 1 cut(s) | 360 |
| BtsCI | GGATG | 1 cut(s) | 364 |
| Cac8I | GCNNGC | 3 cut(s) | 102, 151, 231 |
| CfoI | GCGC | 3 cut(s) | 7, 15, 70 |
| Cfr10I | RCCGGY | 2 cut(s) | 26, 100 |
| Cfr13I | GGNCC | 2 cut(s) | 160, 350 |
| Cfr9I | CCCGGG | 1 cut(s) | 273 |
| Csp6I | GTAC | 1 cut(s) | 302 |
| CviQI | GTAC | 1 cut(s) | 302 |
| DpnI | GATC | 2 cut(s) | 125, 167 |
| DpnII | GATC | 2 cut(s) | 123, 165 |
| EaeI | YGGCCR | 3 cut(s) | 28, 110, 234 |
| EagI | CGGCCG | 3 cut(s) | 28, 110, 234 |
| EciI | GGCGGA | 1 cut(s) | 119 |
| EclXI | CGGCCG | 3 cut(s) | 28, 110, 234 |
| Eco24I | GRGCYC | 1 cut(s) | 52 |
| Eco47I | GGWCC | 2 cut(s) | 160, 350 |
| Eco52I | CGGCCG | 3 cut(s) | 28, 110, 234 |
| Eco88I | CYCGRG | 3 cut(s) | 197, 273, 293 |
| EcoO109I | RGGNCCY | 1 cut(s) | 160 |
| EcoT38I | GRGCYC | 1 cut(s) | 52 |
| FaiI | YATR | 1 cut(s) | 24 |
| FaqI | GGGAC | 2 cut(s) | 146, 255 |
| FauI | CCCGC | 2 cut(s) | 142, 212 |
| FblI | GTMKAC | 1 cut(s) | 289 |
| Fnu4HI | GCNGC | 8 cut(s) | 71, 80, 110, 140, 203, 211, 227, 234 |
| FokI | GGATG | 1 cut(s) | 371 |
| FriOI | GRGCYC | 1 cut(s) | 52 |
| Fsp4HI | GCNGC | 8 cut(s) | 71, 80, 110, 140, 203, 211, 227, 234 |
| GlaI | GCGC | 3 cut(s) | 6, 14, 69 |
| GluI | GCNGC | 8 cut(s) | 71, 80, 110, 140, 203, 211, 227, 234 |
| HaeII | RGCGCY | 1 cut(s) | 8 |
| HaeIII | GGCC | 3 cut(s) | 30, 112, 236 |
| HapII | CCGG | 4 cut(s) | 27, 101, 237, 274 |
| HhaI | GCGC | 3 cut(s) | 7, 15, 70 |
| Hin6I | GCGC | 3 cut(s) | 5, 13, 68 |
| HinP1I | GCGC | 3 cut(s) | 5, 13, 68 |
| HincII | GTYRAC | 2 cut(s) | 290, 364 |
| HindII | GTYRAC | 2 cut(s) | 290, 364 |
| HinfI | GANTC | 2 cut(s) | 291, 315 |
| HpaI | GTTAAC | 1 cut(s) | 364 |
| HpaII | CCGG | 4 cut(s) | 27, 101, 237, 274 |
| HphI | GGTGA | 1 cut(s) | 200 |
| Hpy166II | GTNNAC | 3 cut(s) | 191, 290, 364 |
| Hpy188III | TCNNGA | 2 cut(s) | 163, 169 |
| Hpy8I | GTNNAC | 3 cut(s) | 191, 290, 364 |
| Hpy99I | CGWCG | 3 cut(s) | 36, 118, 181 |
| HpyAV | CCTTC | 1 cut(s) | 269 |
| HpyCH4III | ACNGT | 1 cut(s) | 287 |
| HpyCH4V | TGCA | 1 cut(s) | 82 |
| HpyF10VI | GCNNNNNNNGC | 7 cut(s) | 36, 76, 79, 106, 118, 202, 216 |
| HspAI | GCGC | 3 cut(s) | 5, 13, 68 |
| KflI | GGGWCCC | 1 cut(s) | 160 |
| KroI | GCCGGC | 1 cut(s) | 100 |
| KroNI | GCCGGC | 1 cut(s) | 102 |
| KspAI | GTTAAC | 1 cut(s) | 364 |
| Kzo9I | GATC | 2 cut(s) | 123, 165 |
| LmnI | GCTCC | 2 cut(s) | 106, 261 |
| LpnPI | CCDG | 7 cut(s) | 40, 75, 114, 250, 284, 287, 366 |
| Lsp1109I | GCAGC | 3 cut(s) | 66, 126, 189 |
| MaeIII | GTNAC | 1 cut(s) | 16 |
| MalI | GATC | 2 cut(s) | 125, 167 |
| MbiI | CCGCTC | 2 cut(s) | 109, 219 |
| MboI | GATC | 2 cut(s) | 123, 165 |
| MflI | RGATCY | 1 cut(s) | 123 |
| MhlI | GDGCHC | 2 cut(s) | 52, 155 |
| MluCI | AATT | 1 cut(s) | 327 |
| MlyI | GAGTC | 1 cut(s) | 285 |
| MnlI | CCTC | 2 cut(s) | 57, 137 |
| MroNI | GCCGGC | 1 cut(s) | 100 |
| MseI | TTAA | 4 cut(s) | 9, 326, 330, 363 |
| MslI | CAYNNNNRTG | 1 cut(s) | 345 |
| MspCI | CTTAAG | 1 cut(s) | 8 |
| MspI | CCGG | 4 cut(s) | 27, 101, 237, 274 |
| MspR9I | CCNGG | 3 cut(s) | 238, 274, 275 |
| MvnI | CGCG | 4 cut(s) | 15, 70, 210, 229 |
| MwoI | GCNNNNNNNGC | 7 cut(s) | 36, 76, 79, 106, 118, 202, 216 |
| NaeI | GCCGGC | 1 cut(s) | 102 |
| NciI | CCSGG | 3 cut(s) | 238, 274, 275 |
| NdeII | GATC | 2 cut(s) | 123, 165 |
| NgoMIV | GCCGGC | 1 cut(s) | 100 |
| NlaIV | GGNNCC | 2 cut(s) | 161, 162 |
| NmeAIII | GCCGAG | 1 cut(s) | 71 |
| NmuCI | GTSAC | 1 cut(s) | 16 |
| PacI | TTAATTAA | 1 cut(s) | 330 |
| PaeR7I | CTCGAG | 1 cut(s) | 197 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 161 |
| PdiI | GCCGGC | 1 cut(s) | 102 |
| PfeI | GAWTC | 1 cut(s) | 315 |
| PkrI | GCNGC | 8 cut(s) | 72, 81, 111, 141, 204, 212, 228, 235 |
| PleI | GAGTC | 1 cut(s) | 285 |
| PpsI | GAGTC | 1 cut(s) | 285 |
| PpuMI | RGGWCCY | 1 cut(s) | 160 |
| Psp5II | RGGWCCY | 1 cut(s) | 160 |
| PspN4I | GGNNCC | 2 cut(s) | 161, 162 |
| PspPI | GGNCC | 2 cut(s) | 160, 350 |
| PspPPI | RGGWCCY | 1 cut(s) | 160 |
| PspXI | VCTCGAGB | 1 cut(s) | 197 |
| PsuI | RGATCY | 1 cut(s) | 123 |
| RsaI | GTAC | 1 cut(s) | 303 |
| RsaNI | GTAC | 1 cut(s) | 302 |
| RseI | CAYNNNNRTG | 1 cut(s) | 345 |
| SalI | GTCGAC | 1 cut(s) | 288 |
| SaqAI | TTAA | 4 cut(s) | 9, 326, 330, 363 |
| SatI | GCNGC | 8 cut(s) | 71, 80, 110, 140, 203, 211, 227, 234 |
| Sau3AI | GATC | 2 cut(s) | 123, 165 |
| Sau96I | GGNCC | 2 cut(s) | 160, 350 |
| SchI | GAGTC | 1 cut(s) | 285 |
| ScrFI | CCNGG | 3 cut(s) | 238, 274, 275 |
| SduI | GDGCHC | 2 cut(s) | 52, 155 |
| SetI | ASST | 2 cut(s) | 23, 204 |
| Sfr274I | CTCGAG | 1 cut(s) | 197 |
| SinI | GGWCC | 2 cut(s) | 160, 350 |
| SlaI | CTCGAG | 1 cut(s) | 197 |
| SmaI | CCCGGG | 1 cut(s) | 275 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 345 |
| SmlI | CTYRAG | 2 cut(s) | 8, 197 |
| SmoI | CTYRAG | 2 cut(s) | 8, 197 |
| Sse9I | AATT | 1 cut(s) | 327 |
| StyD4I | CCNGG | 3 cut(s) | 236, 272, 273 |
| TaaI | ACNGT | 1 cut(s) | 287 |
| TaqI | TCGA | 2 cut(s) | 198, 289 |
| TasI | AATT | 1 cut(s) | 327 |
| TauI | GCSGC | 5 cut(s) | 73, 112, 213, 229, 236 |
| TfiI | GAWTC | 1 cut(s) | 315 |
| Tru1I | TTAA | 4 cut(s) | 9, 326, 330, 363 |
| Tru9I | TTAA | 4 cut(s) | 9, 326, 330, 363 |
| TseFI | GTSAC | 1 cut(s) | 16 |
| TseI | GCWGC | 3 cut(s) | 79, 139, 202 |
| Tsp45I | GTSAC | 1 cut(s) | 16 |
| TspGWI | ACGGA | 3 cut(s) | 259, 308, 319 |
| TspMI | CCCGGG | 1 cut(s) | 273 |
| Vha464I | CTTAAG | 1 cut(s) | 8 |
| VpaK11BI | GGWCC | 2 cut(s) | 160, 350 |
| XhoI | CTCGAG | 1 cut(s) | 197 |
| XmaI | CCCGGG | 1 cut(s) | 273 |
| XmiI | GTMKAC | 1 cut(s) | 289 |