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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccBSI | CCGCTC | 1 cut(s) | 141 |
| AccI | GTMKAC | 1 cut(s) | 288 |
| AccII | CGCG | 4 cut(s) | 132, 151, 251, 335 |
| AciI | CCGC | 7 cut(s) | 124, 130, 132, 141, 149, 156, 335 |
| AclWI | GGATC | 2 cut(s) | 31, 44 |
| AcoI | YGGCCR | 1 cut(s) | 429 |
| AcyI | GRCGYC | 1 cut(s) | 104 |
| AfiI | CCNNNNNNNGG | 5 cut(s) | 357, 411, 416, 451, 473 |
| AgsI | TTSAA | 1 cut(s) | 203 |
| AlwI | GGATC | 2 cut(s) | 31, 44 |
| Ama87I | CYCGRG | 3 cut(s) | 47, 64, 118 |
| AoxI | GGCC | 3 cut(s) | 87, 369, 429 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 217, 249 |
| AspLEI | GCGC | 1 cut(s) | 253 |
| AspS9I | GGNCC | 2 cut(s) | 82, 88 |
| AsuC2I | CCSGG | 4 cut(s) | 86, 160, 170, 195 |
| AsuHPI | GGTGA | 1 cut(s) | 121 |
| AvaI | CYCGRG | 3 cut(s) | 47, 64, 118 |
| AvaII | GGWCC | 1 cut(s) | 82 |
| BaeGI | GKGCMC | 1 cut(s) | 78 |
| BamHI | GGATCC | 1 cut(s) | 36 |
| BbsI | GAAGAC | 1 cut(s) | 351 |
| BceAI | ACGGC | 2 cut(s) | 335, 410 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 383, 417 |
| BcnI | CCSGG | 4 cut(s) | 86, 160, 170, 195 |
| BfaI | CTAG | 4 cut(s) | 416, 446, 504, 556 |
| BisI | GCNGC | 4 cut(s) | 124, 133, 149, 156 |
| BlsI | GCNGC | 4 cut(s) | 125, 134, 150, 157 |
| Bme1390I | CCNGG | 4 cut(s) | 86, 160, 170, 195 |
| Bme18I | GGWCC | 1 cut(s) | 82 |
| BmeT110I | CYCGRG | 3 cut(s) | 47, 64, 118 |
| BmgT120I | GGNCC | 2 cut(s) | 82, 88 |
| BmiI | GGNNCC | 4 cut(s) | 38, 83, 84, 90 |
| BmrFI | CCNGG | 4 cut(s) | 86, 160, 170, 195 |
| BmsI | GCATC | 1 cut(s) | 391 |
| BpiI | GAAGAC | 1 cut(s) | 351 |
| BpuMI | CCSGG | 4 cut(s) | 86, 160, 170, 195 |
| BsaHI | GRCGYC | 1 cut(s) | 104 |
| Bsc4I | CCNNNNNNNGG | 5 cut(s) | 357, 411, 416, 451, 473 |
| Bse3DI | GCAATG | 3 cut(s) | 427, 468, 525 |
| BseLI | CCNNNNNNNGG | 5 cut(s) | 357, 411, 416, 451, 473 |
| BseMI | GCAATG | 3 cut(s) | 427, 468, 525 |
| BseSI | GKGCMC | 1 cut(s) | 78 |
| BseYI | CCCAGC | 1 cut(s) | 71 |
| Bsh1236I | CGCG | 4 cut(s) | 132, 151, 251, 335 |
| Bsh1285I | CGRYCG | 2 cut(s) | 169, 209 |
| BshFI | GGCC | 3 cut(s) | 89, 371, 431 |
| BsiEI | CGRYCG | 2 cut(s) | 169, 209 |
| BsiHKCI | CYCGRG | 3 cut(s) | 47, 64, 118 |
| BsiSI | CCGG | 4 cut(s) | 86, 159, 169, 195 |
| BslFI | GGGAC | 3 cut(s) | 68, 176, 266 |
| BslI | CCNNNNNNNGG | 5 cut(s) | 357, 411, 416, 451, 473 |
| BsmFI | GGGAC | 3 cut(s) | 68, 176, 266 |
| BsmI | GAATGC | 1 cut(s) | 401 |
| BsnI | GGCC | 3 cut(s) | 89, 371, 431 |
| BsoBI | CYCGRG | 3 cut(s) | 47, 64, 118 |
| Bsp1286I | GDGCHC | 1 cut(s) | 78 |
| Bsp143I | GATC | 2 cut(s) | 36, 206 |
| BspACI | CCGC | 7 cut(s) | 124, 130, 132, 141, 149, 156, 335 |
| BspANI | GGCC | 3 cut(s) | 89, 371, 431 |
| BspFNI | CGCG | 4 cut(s) | 132, 151, 251, 335 |
| BspLI | GGNNCC | 4 cut(s) | 38, 83, 84, 90 |
| BspPI | GGATC | 2 cut(s) | 31, 44 |
| BsrBI | CCGCTC | 1 cut(s) | 141 |
| BsrDI | GCAATG | 3 cut(s) | 427, 468, 525 |
| BssMI | GATC | 2 cut(s) | 36, 206 |
| BssNI | GRCGYC | 1 cut(s) | 104 |
| BssT1I | CCWWGG | 6 cut(s) | 311, 410, 472, 494, 529, 550 |
| Bst4CI | ACNGT | 1 cut(s) | 280 |
| BstACI | GRCGYC | 1 cut(s) | 104 |
| BstC8I | GCNNGC | 3 cut(s) | 153, 501, 536 |
| BstDSI | CCRYGG | 2 cut(s) | 130, 426 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 449 |
| BstFNI | CGCG | 4 cut(s) | 132, 151, 251, 335 |
| BstHHI | GCGC | 1 cut(s) | 253 |
| BstKTI | GATC | 2 cut(s) | 39, 209 |
| BstMBI | GATC | 2 cut(s) | 36, 206 |
| BstMCI | CGRYCG | 2 cut(s) | 169, 209 |
| BstMWI | GCNNNNNNNGC | 6 cut(s) | 123, 129, 132, 138, 382, 509 |
| BstSCI | CCNGG | 4 cut(s) | 84, 158, 168, 193 |
| BstSLI | GKGCMC | 1 cut(s) | 78 |
| BstUI | CGCG | 4 cut(s) | 132, 151, 251, 335 |
| BstV2I | GAAGAC | 1 cut(s) | 351 |
| BstX2I | RGATCY | 1 cut(s) | 36 |
| BstYI | RGATCY | 1 cut(s) | 36 |
| BsuRI | GGCC | 3 cut(s) | 89, 371, 431 |
| BtgI | CCRYGG | 2 cut(s) | 130, 426 |
| BtgZI | GCGATG | 1 cut(s) | 414 |
| Cac8I | GCNNGC | 3 cut(s) | 153, 501, 536 |
| CfoI | GCGC | 1 cut(s) | 253 |
| Cfr13I | GGNCC | 2 cut(s) | 82, 88 |
| Cfr42I | CCGCGG | 1 cut(s) | 133 |
| CseI | GACGC | 3 cut(s) | 93, 257, 391 |
| CviAII | CATG | 1 cut(s) | 254 |
| DpnI | GATC | 2 cut(s) | 38, 208 |
| DpnII | GATC | 2 cut(s) | 36, 206 |
| EaeI | YGGCCR | 1 cut(s) | 429 |
| Eco130I | CCWWGG | 6 cut(s) | 311, 410, 472, 494, 529, 550 |
| Eco47I | GGWCC | 1 cut(s) | 82 |
| Eco88I | CYCGRG | 3 cut(s) | 47, 64, 118 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 449 |
| EcoO109I | RGGNCCY | 1 cut(s) | 82 |
| EcoT14I | CCWWGG | 6 cut(s) | 311, 410, 472, 494, 529, 550 |
| ErhI | CCWWGG | 6 cut(s) | 311, 410, 472, 494, 529, 550 |
| FaeI | CATG | 1 cut(s) | 257 |
| FaiI | YATR | 1 cut(s) | 255 |
| FaqI | GGGAC | 3 cut(s) | 68, 176, 266 |
| FatI | CATG | 1 cut(s) | 253 |
| FauI | CCCGC | 2 cut(s) | 134, 328 |
| FblI | GTMKAC | 1 cut(s) | 288 |
| Fnu4HI | GCNGC | 4 cut(s) | 124, 133, 149, 156 |
| Fsp4HI | GCNGC | 4 cut(s) | 124, 133, 149, 156 |
| FspBI | CTAG | 4 cut(s) | 416, 446, 504, 556 |
| GlaI | GCGC | 1 cut(s) | 252 |
| GluI | GCNGC | 4 cut(s) | 124, 133, 149, 156 |
| GsaI | CCCAGC | 1 cut(s) | 75 |
| HaeIII | GGCC | 3 cut(s) | 89, 371, 431 |
| HapII | CCGG | 4 cut(s) | 86, 159, 169, 195 |
| HgaI | GACGC | 3 cut(s) | 93, 257, 391 |
| HhaI | GCGC | 1 cut(s) | 253 |
| Hin1I | GRCGYC | 1 cut(s) | 104 |
| Hin1II | CATG | 1 cut(s) | 257 |
| Hin6I | GCGC | 1 cut(s) | 251 |
| HinP1I | GCGC | 1 cut(s) | 251 |
| HinfI | GANTC | 5 cut(s) | 211, 216, 271, 330, 361 |
| HpaII | CCGG | 4 cut(s) | 86, 159, 169, 195 |
| HphI | GGTGA | 1 cut(s) | 121 |
| Hpy166II | GTNNAC | 2 cut(s) | 112, 289 |
| Hpy188I | TCNGA | 1 cut(s) | 360 |
| Hpy188III | TCNNGA | 1 cut(s) | 49 |
| Hpy8I | GTNNAC | 2 cut(s) | 112, 289 |
| Hpy99I | CGWCG | 4 cut(s) | 103, 109, 382, 385 |
| HpyAV | CCTTC | 2 cut(s) | 190, 445 |
| HpyCH4III | ACNGT | 1 cut(s) | 280 |
| HpyCH4V | TGCA | 2 cut(s) | 461, 518 |
| HpyF10VI | GCNNNNNNNGC | 6 cut(s) | 123, 129, 132, 138, 382, 509 |
| Hsp92I | GRCGYC | 1 cut(s) | 104 |
| Hsp92II | CATG | 1 cut(s) | 257 |
| HspAI | GCGC | 1 cut(s) | 251 |
| KflI | GGGWCCC | 1 cut(s) | 82 |
| KspI | CCGCGG | 1 cut(s) | 133 |
| Kzo9I | GATC | 2 cut(s) | 36, 206 |
| LmnI | GCTCC | 1 cut(s) | 182 |
| LpnPI | CCDG | 6 cut(s) | 57, 99, 172, 182, 208, 309 |
| LweI | GCATC | 1 cut(s) | 391 |
| MaeI | CTAG | 4 cut(s) | 416, 446, 504, 556 |
| MaeIII | GTNAC | 2 cut(s) | 41, 245 |
| MalI | GATC | 2 cut(s) | 38, 208 |
| MbiI | CCGCTC | 1 cut(s) | 141 |
| MboI | GATC | 2 cut(s) | 36, 206 |
| MboII | GAAGA | 1 cut(s) | 356 |
| MflI | RGATCY | 1 cut(s) | 36 |
| MhlI | GDGCHC | 1 cut(s) | 78 |
| MluCI | AATT | 1 cut(s) | 240 |
| MlyI | GAGTC | 2 cut(s) | 205, 355 |
| MnlI | CCTC | 6 cut(s) | 56, 60, 240, 361, 431, 502 |
| MseI | TTAA | 1 cut(s) | 264 |
| MspA1I | CMGCKG | 1 cut(s) | 132 |
| MspI | CCGG | 4 cut(s) | 86, 159, 169, 195 |
| MspR9I | CCNGG | 4 cut(s) | 86, 160, 170, 195 |
| Mva1269I | GAATGC | 1 cut(s) | 401 |
| MvnI | CGCG | 4 cut(s) | 132, 151, 251, 335 |
| MwoI | GCNNNNNNNGC | 6 cut(s) | 123, 129, 132, 138, 382, 509 |
| NciI | CCSGG | 4 cut(s) | 86, 160, 170, 195 |
| NdeII | GATC | 2 cut(s) | 36, 206 |
| NlaIII | CATG | 1 cut(s) | 257 |
| NlaIV | GGNNCC | 4 cut(s) | 38, 83, 84, 90 |
| NmeAIII | GCCGAG | 1 cut(s) | 492 |
| NmuCI | GTSAC | 1 cut(s) | 245 |
| PaeR7I | CTCGAG | 2 cut(s) | 64, 118 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 211 |
| PctI | GAATGC | 1 cut(s) | 401 |
| PfeI | GAWTC | 3 cut(s) | 216, 271, 330 |
| PkrI | GCNGC | 4 cut(s) | 125, 134, 150, 157 |
| Ple19I | CGATCG | 1 cut(s) | 209 |
| PleI | GAGTC | 2 cut(s) | 205, 355 |
| PpsI | GAGTC | 2 cut(s) | 205, 355 |
| PpuMI | RGGWCCY | 1 cut(s) | 82 |
| Psp5II | RGGWCCY | 1 cut(s) | 82 |
| PspFI | CCCAGC | 1 cut(s) | 71 |
| PspN4I | GGNNCC | 4 cut(s) | 38, 83, 84, 90 |
| PspPI | GGNCC | 2 cut(s) | 82, 88 |
| PspPPI | RGGWCCY | 1 cut(s) | 82 |
| PspXI | VCTCGAGB | 2 cut(s) | 64, 118 |
| PsuI | RGATCY | 1 cut(s) | 36 |
| PvuI | CGATCG | 1 cut(s) | 209 |
| SacII | CCGCGG | 1 cut(s) | 133 |
| SaqAI | TTAA | 1 cut(s) | 264 |
| SatI | GCNGC | 4 cut(s) | 124, 133, 149, 156 |
| Sau3AI | GATC | 2 cut(s) | 36, 206 |
| Sau96I | GGNCC | 2 cut(s) | 82, 88 |
| SchI | GAGTC | 2 cut(s) | 205, 355 |
| ScrFI | CCNGG | 4 cut(s) | 86, 160, 170, 195 |
| SduI | GDGCHC | 1 cut(s) | 78 |
| SetI | ASST | 1 cut(s) | 48 |
| SfaNI | GCATC | 1 cut(s) | 391 |
| Sfr274I | CTCGAG | 2 cut(s) | 64, 118 |
| Sfr303I | CCGCGG | 1 cut(s) | 133 |
| SgrBI | CCGCGG | 1 cut(s) | 133 |
| SinI | GGWCC | 1 cut(s) | 82 |
| SlaI | CTCGAG | 2 cut(s) | 64, 118 |
| SmlI | CTYRAG | 2 cut(s) | 64, 118 |
| SmoI | CTYRAG | 2 cut(s) | 64, 118 |
| Sse9I | AATT | 1 cut(s) | 240 |
| SsiI | CCGC | 7 cut(s) | 124, 130, 132, 141, 149, 156, 335 |
| SspMI | CTAG | 4 cut(s) | 416, 446, 504, 556 |
| StyD4I | CCNGG | 4 cut(s) | 84, 158, 168, 193 |
| StyI | CCWWGG | 6 cut(s) | 311, 410, 472, 494, 529, 550 |
| TaaI | ACNGT | 1 cut(s) | 280 |
| TaqI | TCGA | 4 cut(s) | 65, 119, 209, 214 |
| TasI | AATT | 1 cut(s) | 240 |
| TauI | GCSGC | 4 cut(s) | 126, 135, 151, 158 |
| TfiI | GAWTC | 3 cut(s) | 216, 271, 330 |
| Tru1I | TTAA | 1 cut(s) | 264 |
| Tru9I | TTAA | 1 cut(s) | 264 |
| TseFI | GTSAC | 1 cut(s) | 245 |
| Tsp45I | GTSAC | 1 cut(s) | 245 |
| TspDTI | ATGAA | 1 cut(s) | 270 |
| TspGWI | ACGGA | 1 cut(s) | 29 |
| VpaK11BI | GGWCC | 1 cut(s) | 82 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 449 |
| XhoI | CTCGAG | 2 cut(s) | 64, 118 |
| XmiI | GTMKAC | 1 cut(s) | 288 |
| XspI | CTAG | 4 cut(s) | 416, 446, 504, 556 |