Rroxscaffold_88G00451390

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000088
OG0000104
Physical Location & Seq
Reverse (-)
6549 .. 8223
1675 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_88G00451390.1

Sequence Viewer

Length: 642 bp
ATGTGGAACGGTCACAAGCCGGGTCCGCCACTCGACTCGGGGCGTGGACCGTTACGGATTGCGGCGGCGGCCAAAGCCCGGCTGTTGATATGCCCGTGGAGACGTCGTCGACGCGATCATGGTAGGCGGCATGCGCCGTCTCGGCGTGCTTCGGCATCTGCGTGCTCTGGTAAACGGCTGCGGGCTCCCCATTCGGCCGTCTTGAAACACGGACCAAGGAGTCGACATGTGTGCGCGAGTCAACGGGTGATTAAACCCGTAAGGCGCAAGGAAGCTAATGTGCGGGATCCCTTTGCGGGTGCACCGCCGACCGACCTTGATCTTCGAGAAGGGTTCGAGTGTGAGCATGCCTGTCGGGACCGAAAGATGGTGAACGACCTGCGGTCAATGGAACAATGTAGGCAAGGGAAGTCGGCAAAATGGATCCGTAACCTCGGGAAAAGGATTGGCTGCGAGGGCGGGCACGGGGTCCCGGTCCCGAACCCGTCGGCTGTCGGTGAACTGCTCGAGCGCTTCCGCGGCGAGAGCGGGTCGCCGCGTGCCGGCCGGGGACGGACGGGAACGCTCCTTCGGGGGCTTTCCCGGCGTTCAACGGTCGACTCGGAACTGGTACGGACAAGGGGAATCCGACTGTTTAATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

213

Amino Acids

23.68

Weight (kDa)

11.68

Isoelectric Point (pI)

68.17

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000104)

Species Orthologous Gene IDs
pyrus_communis pycom2246g00050 pycom2246g00060 pycom2246g00070 pycom2246g00100 pycom2246g00170 pycom2575g00020 pycom520g01350
rosa_roxburghii Rroxscaffold_102G00450880 Rroxscaffold_102G00450940 Rroxscaffold_103G00450570 Rroxscaffold_104G00444660 Rroxscaffold_104G00444710 Rroxscaffold_104G00444740 Rroxscaffold_104G00444800 Rroxscaffold_104G00444860 Rroxscaffold_105G00447090 Rroxscaffold_105G00447190 Rroxscaffold_105G00447230 Rroxscaffold_106G00451430 Rroxscaffold_107G00442440 Rroxscaffold_107G00442550 Rroxscaffold_107G00442640 Rroxscaffold_107G00442690 Rroxscaffold_111G00451560 Rroxscaffold_112G00451580 Rroxscaffold_113G00451620 Rroxscaffold_115G00451690 Rroxscaffold_118G00451780 Rroxscaffold_122G00451870 Rroxscaffold_123G00451910 Rroxscaffold_124G00451960 Rroxscaffold_128G00452050 Rroxscaffold_12G00450640 Rroxscaffold_131G00452100 Rroxscaffold_132G00452130 Rroxscaffold_138G00452190 Rroxscaffold_13G00448670 Rroxscaffold_14G00441890 Rroxscaffold_14G00441960 Rroxscaffold_14G00442010 Rroxscaffold_14G00442070 Rroxscaffold_15G00447460 Rroxscaffold_15G00447510 Rroxscaffold_15G00447580 Rroxscaffold_162G00450750 Rroxscaffold_17G00435460 Rroxscaffold_17G00435510 Rroxscaffold_17G00435570 Rroxscaffold_17G00435640 Rroxscaffold_17G00435910 Rroxscaffold_18G00446090 Rroxscaffold_18G00446110 Rroxscaffold_18G00446170 Rroxscaffold_19G00448930 Rroxscaffold_1G00000010 Rroxscaffold_1G00000090 Rroxscaffold_1G00000130 Rroxscaffold_20G00445030 Rroxscaffold_20G00445040 Rroxscaffold_20G00445070 Rroxscaffold_20G00445110 Rroxscaffold_21G00439440 Rroxscaffold_21G00439460 Rroxscaffold_21G00439470 Rroxscaffold_21G00439520 Rroxscaffold_21G00439570 Rroxscaffold_21G00439660 Rroxscaffold_22G00439850 Rroxscaffold_22G00439990 Rroxscaffold_22G00440030 Rroxscaffold_25G00450140 Rroxscaffold_25G00450170 Rroxscaffold_26G00447770 Rroxscaffold_27G00446650 Rroxscaffold_29G00441730 Rroxscaffold_29G00441740 Rroxscaffold_29G00441760 Rroxscaffold_29G00441780 Rroxscaffold_29G00441830 Rroxscaffold_29G00441870 Rroxscaffold_30G00449490 Rroxscaffold_30G00449510 Rroxscaffold_31G00438130 Rroxscaffold_31G00438170 Rroxscaffold_31G00438270 Rroxscaffold_32G00442790 Rroxscaffold_32G00442800 Rroxscaffold_32G00442840 Rroxscaffold_33G00439700 Rroxscaffold_33G00439710 Rroxscaffold_34G00443170 Rroxscaffold_34G00443210 Rroxscaffold_34G00443280 Rroxscaffold_34G00443310 Rroxscaffold_35G00441010 Rroxscaffold_35G00441120 Rroxscaffold_35G00441180 Rroxscaffold_35G00441260 Rroxscaffold_35G00441290 Rroxscaffold_36G00440070 Rroxscaffold_36G00440110 Rroxscaffold_36G00440140 Rroxscaffold_36G00440190 Rroxscaffold_37G00445180 Rroxscaffold_37G00445190 Rroxscaffold_37G00445230 Rroxscaffold_37G00445240 Rroxscaffold_37G00445270 Rroxscaffold_38G00444450 Rroxscaffold_38G00444530 Rroxscaffold_38G00444570 Rroxscaffold_38G00444600 Rroxscaffold_38G00444620 Rroxscaffold_39G00448260 Rroxscaffold_40G00447720 Rroxscaffold_43G00449810 Rroxscaffold_43G00449840 Rroxscaffold_43G00449900 Rroxscaffold_44G00440460 Rroxscaffold_44G00440470 Rroxscaffold_44G00440510 Rroxscaffold_44G00440600 Rroxscaffold_44G00440640 Rroxscaffold_45G00438810 Rroxscaffold_45G00438840 Rroxscaffold_45G00438870 Rroxscaffold_45G00438890 Rroxscaffold_45G00438980 Rroxscaffold_46G00448720 Rroxscaffold_46G00448740 Rroxscaffold_47G00443950 Rroxscaffold_47G00443980 Rroxscaffold_47G00444000 Rroxscaffold_47G00444090 Rroxscaffold_48G00448430 Rroxscaffold_48G00448470 Rroxscaffold_48G00448510 Rroxscaffold_49G00438600 Rroxscaffold_49G00438620 Rroxscaffold_49G00438680 Rroxscaffold_49G00438710 Rroxscaffold_49G00438740 Rroxscaffold_49G00438780 Rroxscaffold_50G00444160 Rroxscaffold_50G00444260 Rroxscaffold_50G00444290 Rroxscaffold_50G00444370 Rroxscaffold_50G00444400 Rroxscaffold_53G00449700 Rroxscaffold_53G00449730 Rroxscaffold_53G00449740 Rroxscaffold_54G00443410 Rroxscaffold_54G00443460 Rroxscaffold_54G00443490 Rroxscaffold_54G00443530 Rroxscaffold_54G00443580 Rroxscaffold_54G00443610 Rroxscaffold_54G00443670 Rroxscaffold_55G00450070 Rroxscaffold_55G00450130 Rroxscaffold_56G00450950 Rroxscaffold_58G00449000 Rroxscaffold_58G00449050 Rroxscaffold_59G00442150 Rroxscaffold_59G00442180 Rroxscaffold_59G00442250 Rroxscaffold_59G00442270 Rroxscaffold_59G00442280 Rroxscaffold_60G00448270 Rroxscaffold_60G00448290 Rroxscaffold_60G00448330 Rroxscaffold_60G00448400 Rroxscaffold_61G00449970 Rroxscaffold_62G00437930 Rroxscaffold_62G00438030 Rroxscaffold_64G00450690 Rroxscaffold_64G00450700 Rroxscaffold_65G00445280 Rroxscaffold_65G00445350 Rroxscaffold_65G00445390 Rroxscaffold_66G00437570 Rroxscaffold_66G00437600 Rroxscaffold_66G00437620 Rroxscaffold_66G00437690 Rroxscaffold_66G00437730 Rroxscaffold_66G00437770 Rroxscaffold_66G00437860 Rroxscaffold_68G00447000 Rroxscaffold_68G00447040 Rroxscaffold_69G00446680 Rroxscaffold_69G00446780 Rroxscaffold_69G00446790 Rroxscaffold_69G00446810 Rroxscaffold_6G00387760 Rroxscaffold_6G00387790 Rroxscaffold_6G00387830 Rroxscaffold_6G00387840 Rroxscaffold_70G00446290 Rroxscaffold_70G00446390 Rroxscaffold_71G00445730 Rroxscaffold_71G00445750 Rroxscaffold_72G00449340 Rroxscaffold_72G00449380 Rroxscaffold_73G00439090 Rroxscaffold_73G00439120 Rroxscaffold_73G00439190 Rroxscaffold_73G00439210 Rroxscaffold_73G00439250 Rroxscaffold_74G00442890 Rroxscaffold_74G00442960 Rroxscaffold_75G00447280 Rroxscaffold_75G00447300 Rroxscaffold_75G00447340 Rroxscaffold_75G00447390 Rroxscaffold_75G00447410 Rroxscaffold_75G00447440 Rroxscaffold_76G00448590 Rroxscaffold_78G00449630 Rroxscaffold_78G00449640 Rroxscaffold_79G00450250 Rroxscaffold_80G00450280 Rroxscaffold_80G00450300 Rroxscaffold_80G00450310 Rroxscaffold_81G00450490 Rroxscaffold_82G00450810 Rroxscaffold_86G00451260 Rroxscaffold_87G00451290 Rroxscaffold_87G00451300 Rroxscaffold_87G00451320 Rroxscaffold_88G00451390 Rroxscaffold_90G00448810 Rroxscaffold_91G00442980 Rroxscaffold_91G00443040 Rroxscaffold_92G00446460 Rroxscaffold_92G00446490 Rroxscaffold_92G00446500 Rroxscaffold_92G00446520 Rroxscaffold_92G00446540 Rroxscaffold_92G00446560 Rroxscaffold_93G00440970 Rroxscaffold_93G00440990 Rroxscaffold_94G00445800 Rroxscaffold_94G00445870 Rroxscaffold_94G00445950 Rroxscaffold_94G00445990 Rroxscaffold_95G00449230 Rroxscaffold_95G00449260 Rroxscaffold_95G00449270 Rroxscaffold_96G00449080 Rroxscaffold_97G00442330 Rroxscaffold_97G00442350 Rroxscaffold_97G00442360 Rroxscaffold_98G00451340 Rroxscaffold_99G00451190 Rroxscaffold_99G00451210

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 219
AatII GACGTC 1 cut(s) 106
Acc36I ACCTGC 1 cut(s) 387
AccBSI CCGCTC 1 cut(s) 528
AccI GTMKAC 3 cut(s) 109, 223, 597
AccII CGCG 4 cut(s) 114, 236, 519, 538
AclWI GGATC 4 cut(s) 281, 294, 418, 431
AcoI YGGCCR 3 cut(s) 69, 195, 544
AcyI GRCGYC 1 cut(s) 103
AfaI GTAC 1 cut(s) 612
AfeI AGCGCT 1 cut(s) 512
AfiI CCNNNNNNNGG 4 cut(s) 78, 296, 367, 542
AflIII ACRYGT 1 cut(s) 226
AgsI TTSAA 2 cut(s) 205, 591
AhdI GACNNNNNGTC 1 cut(s) 382
AluBI AGCT 1 cut(s) 275
AluI AGCT 1 cut(s) 275
Alw21I GWGCWC 2 cut(s) 167, 304
Alw26I GTCTC 2 cut(s) 94, 144
Alw44I GTGCAC 1 cut(s) 300
AlwI GGATC 4 cut(s) 281, 294, 418, 431
Ama87I CYCGRG 3 cut(s) 37, 434, 506
Aor51HI AGCGCT 1 cut(s) 512
AoxI GGCC 3 cut(s) 69, 195, 544
ApaLI GTGCAC 1 cut(s) 300
ApeKI GCWGC 2 cut(s) 178, 450
AspLEI GCGC 4 cut(s) 136, 236, 267, 513
AspS9I GGNCC 6 cut(s) 23, 47, 212, 358, 469, 475
AsuC2I CCSGG 5 cut(s) 21, 79, 473, 548, 583
AsuHPI GGTGA 3 cut(s) 259, 382, 509
AvaI CYCGRG 3 cut(s) 37, 434, 506
AvaII GGWCC 6 cut(s) 23, 47, 212, 358, 469, 475
BaeGI GKGCMC 2 cut(s) 304, 465
BamHI GGATCC 2 cut(s) 286, 423
BanII GRGCYC 1 cut(s) 187
Bbv12I GWGCWC 2 cut(s) 167, 304
BbvI GCAGC 2 cut(s) 165, 437
BccI CCATC 1 cut(s) 361
BceAI ACGGC 3 cut(s) 121, 182, 191
BcgI CGANNNNNNTGC 4 cut(s) 213, 247, 335, 369
BcnI CCSGG 5 cut(s) 21, 79, 473, 548, 583
BcoDI GTCTC 2 cut(s) 94, 144
BfoI RGCGCY 1 cut(s) 514
BfuAI ACCTGC 1 cut(s) 387
BglI GCCNNNNNGGC 1 cut(s) 142
BisI GCNGC 8 cut(s) 63, 66, 69, 128, 179, 451, 520, 536
BlsI GCNGC 8 cut(s) 64, 67, 70, 129, 180, 452, 521, 537
Bme1390I CCNGG 5 cut(s) 21, 79, 473, 548, 583
Bme18I GGWCC 6 cut(s) 23, 47, 212, 358, 469, 475
BmeRI GACNNNNNGTC 1 cut(s) 382
BmeT110I CYCGRG 3 cut(s) 37, 434, 506
BmgT120I GGNCC 6 cut(s) 23, 47, 212, 358, 469, 475
BmiI GGNNCC 8 cut(s) 24, 186, 288, 359, 425, 470, 471, 477
BmrFI CCNGG 5 cut(s) 21, 79, 473, 548, 583
BmsI GCATC 1 cut(s) 164
BpuMI CCSGG 5 cut(s) 21, 79, 473, 548, 583
BsaHI GRCGYC 1 cut(s) 103
BsaJI CCNNGG 5 cut(s) 95, 215, 433, 517, 547
BsaXI ACNNNNNCTCC 2 cut(s) 91, 121
Bsc4I CCNNNNNNNGG 4 cut(s) 78, 296, 367, 542
Bse118I RCCGGY 1 cut(s) 542
Bse1I ACTGG 1 cut(s) 612
BseDI CCNNGG 5 cut(s) 95, 215, 433, 517, 547
BseLI CCNNNNNNNGG 4 cut(s) 78, 296, 367, 542
BseNI ACTGG 1 cut(s) 612
BseSI GKGCMC 2 cut(s) 304, 465
BseX3I CGGCCG 2 cut(s) 195, 544
BseXI GCAGC 2 cut(s) 165, 437
Bsh1236I CGCG 4 cut(s) 114, 236, 519, 538
Bsh1285I CGRYCG 4 cut(s) 198, 312, 547, 597
BshFI GGCC 3 cut(s) 71, 197, 546
BsiEI CGRYCG 4 cut(s) 198, 312, 547, 597
BsiHKAI GWGCWC 2 cut(s) 167, 304
BsiHKCI CYCGRG 3 cut(s) 37, 434, 506
BsiSI CCGG 6 cut(s) 20, 79, 473, 543, 547, 583
BslFI GGGAC 4 cut(s) 371, 455, 461, 564
BslI CCNNNNNNNGG 4 cut(s) 78, 296, 367, 542
BsmAI GTCTC 2 cut(s) 94, 144
BsmBI CGTCTC 2 cut(s) 94, 144
BsmFI GGGAC 4 cut(s) 371, 455, 461, 564
BsnI GGCC 3 cut(s) 71, 197, 546
BsoBI CYCGRG 3 cut(s) 37, 434, 506
Bsp1286I GDGCHC 4 cut(s) 167, 187, 304, 465
Bsp143I GATC 4 cut(s) 115, 286, 319, 423
BspANI GGCC 3 cut(s) 71, 197, 546
BspFNI CGCG 4 cut(s) 114, 236, 519, 538
BspLI GGNNCC 8 cut(s) 24, 186, 288, 359, 425, 470, 471, 477
BspMI ACCTGC 1 cut(s) 387
BspPI GGATC 4 cut(s) 281, 294, 418, 431
BsrBI CCGCTC 1 cut(s) 528
BsrFI RCCGGY 1 cut(s) 542
BsrI ACTGG 1 cut(s) 612
BssAI RCCGGY 1 cut(s) 542
BssECI CCNNGG 5 cut(s) 95, 215, 433, 517, 547
BssMI GATC 4 cut(s) 115, 286, 319, 423
BssNI GRCGYC 1 cut(s) 103
BssT1I CCWWGG 1 cut(s) 215
Bst4CI ACNGT 4 cut(s) 11, 51, 595, 633
BstACI GRCGYC 1 cut(s) 103
BstC8I GCNNGC 8 cut(s) 132, 147, 163, 183, 348, 461, 540, 544
BstDSI CCRYGG 2 cut(s) 95, 517
BstFNI CGCG 4 cut(s) 114, 236, 519, 538
BstH2I RGCGCY 1 cut(s) 514
BstHHI GCGC 4 cut(s) 136, 236, 267, 513
BstKTI GATC 4 cut(s) 118, 289, 322, 426
BstMAI GTCTC 2 cut(s) 94, 144
BstMBI GATC 4 cut(s) 115, 286, 319, 423
BstMCI CGRYCG 4 cut(s) 198, 312, 547, 597
BstMWI GCNNNNNNNGC 9 cut(s) 25, 68, 74, 133, 142, 456, 519, 525, 583
BstNSI RCATGY 3 cut(s) 134, 230, 350
BstSCI CCNGG 5 cut(s) 19, 77, 471, 546, 581
BstSLI GKGCMC 2 cut(s) 304, 465
BstUI CGCG 4 cut(s) 114, 236, 519, 538
BstV1I GCAGC 2 cut(s) 165, 437
BstX2I RGATCY 2 cut(s) 286, 423
BstYI RGATCY 2 cut(s) 286, 423
BstZI CGGCCG 2 cut(s) 195, 544
BsuRI GGCC 3 cut(s) 71, 197, 546
BtgI CCRYGG 2 cut(s) 95, 517
BveI ACCTGC 1 cut(s) 387
Cac8I GCNNGC 8 cut(s) 132, 147, 163, 183, 348, 461, 540, 544
CfoI GCGC 4 cut(s) 136, 236, 267, 513
Cfr10I RCCGGY 1 cut(s) 542
Cfr13I GGNCC 6 cut(s) 23, 47, 212, 358, 469, 475
Cfr42I CCGCGG 1 cut(s) 520
CseI GACGC 1 cut(s) 120
Csp6I GTAC 1 cut(s) 611
CviAII CATG 4 cut(s) 119, 131, 227, 347
CviQI GTAC 1 cut(s) 611
DpnI GATC 4 cut(s) 117, 288, 321, 425
DpnII GATC 4 cut(s) 115, 286, 319, 423
DrdI GACNNNNNNGTC 1 cut(s) 219
DriI GACNNNNNGTC 1 cut(s) 382
DseDI GACNNNNNNGTC 1 cut(s) 219
EaeI YGGCCR 3 cut(s) 69, 195, 544
EagI CGGCCG 2 cut(s) 195, 544
Eam1105I GACNNNNNGTC 1 cut(s) 382
EciI GGCGGA 1 cut(s) 15
EclXI CGGCCG 2 cut(s) 195, 544
Eco130I CCWWGG 1 cut(s) 215
Eco24I GRGCYC 1 cut(s) 187
Eco47I GGWCC 6 cut(s) 23, 47, 212, 358, 469, 475
Eco47III AGCGCT 1 cut(s) 512
Eco52I CGGCCG 2 cut(s) 195, 544
Eco88I CYCGRG 3 cut(s) 37, 434, 506
EcoO109I RGGNCCY 1 cut(s) 469
EcoT14I CCWWGG 1 cut(s) 215
EcoT38I GRGCYC 1 cut(s) 187
ErhI CCWWGG 1 cut(s) 215
Esp3I CGTCTC 2 cut(s) 94, 144
FaeI CATG 4 cut(s) 122, 134, 230, 350
FaiI YATR 5 cut(s) 91, 120, 132, 228, 348
FaqI GGGAC 4 cut(s) 371, 455, 461, 564
FatI CATG 4 cut(s) 118, 130, 226, 346
FauI CCCGC 5 cut(s) 174, 276, 289, 452, 521
FblI GTMKAC 3 cut(s) 109, 223, 597
Fnu4HI GCNGC 8 cut(s) 63, 66, 69, 128, 179, 451, 520, 536
FriOI GRGCYC 1 cut(s) 187
Fsp4HI GCNGC 8 cut(s) 63, 66, 69, 128, 179, 451, 520, 536
GlaI GCGC 4 cut(s) 135, 235, 266, 512
GluI GCNGC 8 cut(s) 63, 66, 69, 128, 179, 451, 520, 536
HaeII RGCGCY 1 cut(s) 514
HaeIII GGCC 3 cut(s) 71, 197, 546
HapII CCGG 6 cut(s) 20, 79, 473, 543, 547, 583
HgaI GACGC 1 cut(s) 120
HhaI GCGC 4 cut(s) 136, 236, 267, 513
Hin1I GRCGYC 1 cut(s) 103
Hin1II CATG 4 cut(s) 122, 134, 230, 350
Hin6I GCGC 4 cut(s) 134, 234, 265, 511
HinP1I GCGC 4 cut(s) 134, 234, 265, 511
HincII GTYRAC 4 cut(s) 110, 224, 242, 598
HindII GTYRAC 4 cut(s) 110, 224, 242, 598
HinfI GANTC 5 cut(s) 35, 220, 238, 599, 624
HpaII CCGG 6 cut(s) 20, 79, 473, 543, 547, 583
HphI GGTGA 3 cut(s) 259, 382, 509
Hpy166II GTNNAC 9 cut(s) 47, 110, 173, 224, 242, 302, 373, 500, 598
Hpy188I TCNGA 2 cut(s) 604, 629
Hpy188III TCNNGA 5 cut(s) 202, 326, 356, 436, 478
Hpy8I GTNNAC 9 cut(s) 47, 110, 173, 224, 242, 302, 373, 500, 598
Hpy99I CGWCG 4 cut(s) 108, 111, 114, 490
HpyAV CCTTC 2 cut(s) 323, 578
HpyCH4III ACNGT 4 cut(s) 11, 51, 595, 633
HpyCH4IV ACGT 1 cut(s) 103
HpyCH4V TGCA 1 cut(s) 302
HpyF10VI GCNNNNNNNGC 9 cut(s) 25, 68, 74, 133, 142, 456, 519, 525, 583
HpySE526I ACGT 1 cut(s) 103
Hsp92I GRCGYC 1 cut(s) 103
Hsp92II CATG 4 cut(s) 122, 134, 230, 350
HspAI GCGC 4 cut(s) 134, 234, 265, 511
KflI GGGWCCC 1 cut(s) 469
KroI GCCGGC 1 cut(s) 542
KroNI GCCGGC 1 cut(s) 544
KspI CCGCGG 1 cut(s) 520
Kzo9I GATC 4 cut(s) 115, 286, 319, 423
LmnI GCTCC 2 cut(s) 190, 570
Lsp1109I GCAGC 2 cut(s) 165, 437
LweI GCATC 1 cut(s) 164
MaeII ACGT 1 cut(s) 103
MaeIII GTNAC 3 cut(s) 11, 51, 428
MalI GATC 4 cut(s) 117, 288, 321, 425
MbiI CCGCTC 1 cut(s) 528
MboI GATC 4 cut(s) 115, 286, 319, 423
MboII GAAGA 1 cut(s) 314
MflI RGATCY 2 cut(s) 286, 423
MhlI GDGCHC 4 cut(s) 167, 187, 304, 465
MluCI AATT 1 cut(s) 637
MlyI GAGTC 4 cut(s) 29, 229, 247, 593
MnlI CCTC 2 cut(s) 443, 448
MroNI GCCGGC 1 cut(s) 542
MseI TTAA 3 cut(s) 252, 636, 640
MslI CAYNNNNRTG 1 cut(s) 160
MspA1I CMGCKG 1 cut(s) 519
MspI CCGG 6 cut(s) 20, 79, 473, 543, 547, 583
MspR9I CCNGG 5 cut(s) 21, 79, 473, 548, 583
MvnI CGCG 4 cut(s) 114, 236, 519, 538
MwoI GCNNNNNNNGC 9 cut(s) 25, 68, 74, 133, 142, 456, 519, 525, 583
NaeI GCCGGC 1 cut(s) 544
NciI CCSGG 5 cut(s) 21, 79, 473, 548, 583
NdeII GATC 4 cut(s) 115, 286, 319, 423
NgoMIV GCCGGC 1 cut(s) 542
NlaIII CATG 4 cut(s) 122, 134, 230, 350
NlaIV GGNNCC 8 cut(s) 24, 186, 288, 359, 425, 470, 471, 477
NmeAIII GCCGAG 1 cut(s) 121
NmuCI GTSAC 1 cut(s) 11
NspI RCATGY 3 cut(s) 134, 230, 350
PacI TTAATTAA 1 cut(s) 640
PaeI GCATGC 2 cut(s) 134, 350
PaeR7I CTCGAG 1 cut(s) 506
PciI ACATGT 1 cut(s) 226
PcsI WCGNNNNNNNCGW 1 cut(s) 158
PdiI GCCGGC 1 cut(s) 544
PfeI GAWTC 1 cut(s) 624
PflFI GACNNNGTC 1 cut(s) 105
PkrI GCNGC 8 cut(s) 64, 67, 70, 129, 180, 452, 521, 537
PleI GAGTC 4 cut(s) 29, 228, 246, 593
PpsI GAGTC 4 cut(s) 29, 228, 246, 593
PpuMI RGGWCCY 1 cut(s) 469
PscI ACATGT 1 cut(s) 226
Psp5II RGGWCCY 1 cut(s) 469
PspN4I GGNNCC 8 cut(s) 24, 186, 288, 359, 425, 470, 471, 477
PspPI GGNCC 6 cut(s) 23, 47, 212, 358, 469, 475
PspPPI RGGWCCY 1 cut(s) 469
PspXI VCTCGAGB 1 cut(s) 506
PsuI RGATCY 2 cut(s) 286, 423
PsyI GACNNNGTC 1 cut(s) 105
RsaI GTAC 1 cut(s) 612
RsaNI GTAC 1 cut(s) 611
RseI CAYNNNNRTG 1 cut(s) 160
SacII CCGCGG 1 cut(s) 520
SalI GTCGAC 3 cut(s) 108, 222, 596
SaqAI TTAA 3 cut(s) 252, 636, 640
SatI GCNGC 8 cut(s) 63, 66, 69, 128, 179, 451, 520, 536
Sau3AI GATC 4 cut(s) 115, 286, 319, 423
Sau96I GGNCC 6 cut(s) 23, 47, 212, 358, 469, 475
SchI GAGTC 4 cut(s) 29, 229, 247, 593
ScrFI CCNGG 5 cut(s) 21, 79, 473, 548, 583
SduI GDGCHC 4 cut(s) 167, 187, 304, 465
SetI ASST 5 cut(s) 106, 277, 318, 381, 435
SfaNI GCATC 1 cut(s) 164
Sfr274I CTCGAG 1 cut(s) 506
Sfr303I CCGCGG 1 cut(s) 520
SgrBI CCGCGG 1 cut(s) 520
SgrDI CGTCGACG 1 cut(s) 108
SinI GGWCC 6 cut(s) 23, 47, 212, 358, 469, 475
SlaI CTCGAG 1 cut(s) 506
SmiMI CAYNNNNRTG 1 cut(s) 160
SmlI CTYRAG 1 cut(s) 506
SmoI CTYRAG 1 cut(s) 506
SphI GCATGC 2 cut(s) 134, 350
Sse9I AATT 1 cut(s) 637
StyD4I CCNGG 5 cut(s) 19, 77, 471, 546, 581
StyI CCWWGG 1 cut(s) 215
TaaI ACNGT 4 cut(s) 11, 51, 595, 633
TaiI ACGT 1 cut(s) 106
TaqI TCGA 7 cut(s) 33, 109, 223, 325, 336, 507, 597
TaqII GACCGA 2 cut(s) 326, 375
TasI AATT 1 cut(s) 637
TauI GCSGC 6 cut(s) 65, 68, 71, 130, 522, 538
TfiI GAWTC 1 cut(s) 624
Tru1I TTAA 3 cut(s) 252, 636, 640
Tru9I TTAA 3 cut(s) 252, 636, 640
TseFI GTSAC 1 cut(s) 11
TseI GCWGC 2 cut(s) 178, 450
Tsp45I GTSAC 1 cut(s) 11
TspGWI ACGGA 5 cut(s) 70, 225, 416, 568, 628
Tth111I GACNNNGTC 1 cut(s) 105
VneI GTGCAC 1 cut(s) 300
VpaK11BI GGWCC 6 cut(s) 23, 47, 212, 358, 469, 475
XceI RCATGY 3 cut(s) 134, 230, 350
XhoI CTCGAG 1 cut(s) 506
XmiI GTMKAC 3 cut(s) 109, 223, 597
ZraI GACGTC 1 cut(s) 104
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.