Rroxscaffold_43G00449900

protein Sb1514s002020 source

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000043
OG0000104
Physical Location & Seq
Forward (+)
27876 .. 28290
415 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_43G00449900.1

Sequence Viewer

Length: 327 bp
ATGGAACAATGTAGGCAAGGGAAGTCGGCAAAATGGATCCGTAACCTCGGGAAAAGGATTGGCTCGAGGGCTGGGCACGGGGTCCCAGTCCCGAACCCGTCGGCTGTCGGTGAACTGCTCGAGCTGCTTCCGCGGCGAGAGCGGGGTCGCCGCGTGCCGGCCGGGGGACGGACTGGGAACGCTCCTTCGGGGGCTTTCCCCCCCGGCGTTCAACAGTCGACTCAGAACTGTGCTCTGAATGTCAAAGTGAAGAAATTCAACCAAGCGCGGGTAAACGGCGGGAGTAACTATGACTCTCTTAAGGTAGCCAAATGCCTCGTCATCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

108

Amino Acids

11.56

Weight (kDa)

11.21

Isoelectric Point (pI)

48.77

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000104)

Species Orthologous Gene IDs
pyrus_communis pycom2246g00050 pycom2246g00060 pycom2246g00070 pycom2246g00100 pycom2246g00170 pycom2575g00020 pycom520g01350
rosa_roxburghii Rroxscaffold_102G00450880 Rroxscaffold_102G00450940 Rroxscaffold_103G00450570 Rroxscaffold_104G00444660 Rroxscaffold_104G00444710 Rroxscaffold_104G00444740 Rroxscaffold_104G00444800 Rroxscaffold_104G00444860 Rroxscaffold_105G00447090 Rroxscaffold_105G00447190 Rroxscaffold_105G00447230 Rroxscaffold_106G00451430 Rroxscaffold_107G00442440 Rroxscaffold_107G00442550 Rroxscaffold_107G00442640 Rroxscaffold_107G00442690 Rroxscaffold_111G00451560 Rroxscaffold_112G00451580 Rroxscaffold_113G00451620 Rroxscaffold_115G00451690 Rroxscaffold_118G00451780 Rroxscaffold_122G00451870 Rroxscaffold_123G00451910 Rroxscaffold_124G00451960 Rroxscaffold_128G00452050 Rroxscaffold_12G00450640 Rroxscaffold_131G00452100 Rroxscaffold_132G00452130 Rroxscaffold_138G00452190 Rroxscaffold_13G00448670 Rroxscaffold_14G00441890 Rroxscaffold_14G00441960 Rroxscaffold_14G00442010 Rroxscaffold_14G00442070 Rroxscaffold_15G00447460 Rroxscaffold_15G00447510 Rroxscaffold_15G00447580 Rroxscaffold_162G00450750 Rroxscaffold_17G00435460 Rroxscaffold_17G00435510 Rroxscaffold_17G00435570 Rroxscaffold_17G00435640 Rroxscaffold_17G00435910 Rroxscaffold_18G00446090 Rroxscaffold_18G00446110 Rroxscaffold_18G00446170 Rroxscaffold_19G00448930 Rroxscaffold_1G00000010 Rroxscaffold_1G00000090 Rroxscaffold_1G00000130 Rroxscaffold_20G00445030 Rroxscaffold_20G00445040 Rroxscaffold_20G00445070 Rroxscaffold_20G00445110 Rroxscaffold_21G00439440 Rroxscaffold_21G00439460 Rroxscaffold_21G00439470 Rroxscaffold_21G00439520 Rroxscaffold_21G00439570 Rroxscaffold_21G00439660 Rroxscaffold_22G00439850 Rroxscaffold_22G00439990 Rroxscaffold_22G00440030 Rroxscaffold_25G00450140 Rroxscaffold_25G00450170 Rroxscaffold_26G00447770 Rroxscaffold_27G00446650 Rroxscaffold_29G00441730 Rroxscaffold_29G00441740 Rroxscaffold_29G00441760 Rroxscaffold_29G00441780 Rroxscaffold_29G00441830 Rroxscaffold_29G00441870 Rroxscaffold_30G00449490 Rroxscaffold_30G00449510 Rroxscaffold_31G00438130 Rroxscaffold_31G00438170 Rroxscaffold_31G00438270 Rroxscaffold_32G00442790 Rroxscaffold_32G00442800 Rroxscaffold_32G00442840 Rroxscaffold_33G00439700 Rroxscaffold_33G00439710 Rroxscaffold_34G00443170 Rroxscaffold_34G00443210 Rroxscaffold_34G00443280 Rroxscaffold_34G00443310 Rroxscaffold_35G00441010 Rroxscaffold_35G00441120 Rroxscaffold_35G00441180 Rroxscaffold_35G00441260 Rroxscaffold_35G00441290 Rroxscaffold_36G00440070 Rroxscaffold_36G00440110 Rroxscaffold_36G00440140 Rroxscaffold_36G00440190 Rroxscaffold_37G00445180 Rroxscaffold_37G00445190 Rroxscaffold_37G00445230 Rroxscaffold_37G00445240 Rroxscaffold_37G00445270 Rroxscaffold_38G00444450 Rroxscaffold_38G00444530 Rroxscaffold_38G00444570 Rroxscaffold_38G00444600 Rroxscaffold_38G00444620 Rroxscaffold_39G00448260 Rroxscaffold_40G00447720 Rroxscaffold_43G00449810 Rroxscaffold_43G00449840 Rroxscaffold_43G00449900 Rroxscaffold_44G00440460 Rroxscaffold_44G00440470 Rroxscaffold_44G00440510 Rroxscaffold_44G00440600 Rroxscaffold_44G00440640 Rroxscaffold_45G00438810 Rroxscaffold_45G00438840 Rroxscaffold_45G00438870 Rroxscaffold_45G00438890 Rroxscaffold_45G00438980 Rroxscaffold_46G00448720 Rroxscaffold_46G00448740 Rroxscaffold_47G00443950 Rroxscaffold_47G00443980 Rroxscaffold_47G00444000 Rroxscaffold_47G00444090 Rroxscaffold_48G00448430 Rroxscaffold_48G00448470 Rroxscaffold_48G00448510 Rroxscaffold_49G00438600 Rroxscaffold_49G00438620 Rroxscaffold_49G00438680 Rroxscaffold_49G00438710 Rroxscaffold_49G00438740 Rroxscaffold_49G00438780 Rroxscaffold_50G00444160 Rroxscaffold_50G00444260 Rroxscaffold_50G00444290 Rroxscaffold_50G00444370 Rroxscaffold_50G00444400 Rroxscaffold_53G00449700 Rroxscaffold_53G00449730 Rroxscaffold_53G00449740 Rroxscaffold_54G00443410 Rroxscaffold_54G00443460 Rroxscaffold_54G00443490 Rroxscaffold_54G00443530 Rroxscaffold_54G00443580 Rroxscaffold_54G00443610 Rroxscaffold_54G00443670 Rroxscaffold_55G00450070 Rroxscaffold_55G00450130 Rroxscaffold_56G00450950 Rroxscaffold_58G00449000 Rroxscaffold_58G00449050 Rroxscaffold_59G00442150 Rroxscaffold_59G00442180 Rroxscaffold_59G00442250 Rroxscaffold_59G00442270 Rroxscaffold_59G00442280 Rroxscaffold_60G00448270 Rroxscaffold_60G00448290 Rroxscaffold_60G00448330 Rroxscaffold_60G00448400 Rroxscaffold_61G00449970 Rroxscaffold_62G00437930 Rroxscaffold_62G00438030 Rroxscaffold_64G00450690 Rroxscaffold_64G00450700 Rroxscaffold_65G00445280 Rroxscaffold_65G00445350 Rroxscaffold_65G00445390 Rroxscaffold_66G00437570 Rroxscaffold_66G00437600 Rroxscaffold_66G00437620 Rroxscaffold_66G00437690 Rroxscaffold_66G00437730 Rroxscaffold_66G00437770 Rroxscaffold_66G00437860 Rroxscaffold_68G00447000 Rroxscaffold_68G00447040 Rroxscaffold_69G00446680 Rroxscaffold_69G00446780 Rroxscaffold_69G00446790 Rroxscaffold_69G00446810 Rroxscaffold_6G00387760 Rroxscaffold_6G00387790 Rroxscaffold_6G00387830 Rroxscaffold_6G00387840 Rroxscaffold_70G00446290 Rroxscaffold_70G00446390 Rroxscaffold_71G00445730 Rroxscaffold_71G00445750 Rroxscaffold_72G00449340 Rroxscaffold_72G00449380 Rroxscaffold_73G00439090 Rroxscaffold_73G00439120 Rroxscaffold_73G00439190 Rroxscaffold_73G00439210 Rroxscaffold_73G00439250 Rroxscaffold_74G00442890 Rroxscaffold_74G00442960 Rroxscaffold_75G00447280 Rroxscaffold_75G00447300 Rroxscaffold_75G00447340 Rroxscaffold_75G00447390 Rroxscaffold_75G00447410 Rroxscaffold_75G00447440 Rroxscaffold_76G00448590 Rroxscaffold_78G00449630 Rroxscaffold_78G00449640 Rroxscaffold_79G00450250 Rroxscaffold_80G00450280 Rroxscaffold_80G00450300 Rroxscaffold_80G00450310 Rroxscaffold_81G00450490 Rroxscaffold_82G00450810 Rroxscaffold_86G00451260 Rroxscaffold_87G00451290 Rroxscaffold_87G00451300 Rroxscaffold_87G00451320 Rroxscaffold_88G00451390 Rroxscaffold_90G00448810 Rroxscaffold_91G00442980 Rroxscaffold_91G00443040 Rroxscaffold_92G00446460 Rroxscaffold_92G00446490 Rroxscaffold_92G00446500 Rroxscaffold_92G00446520 Rroxscaffold_92G00446540 Rroxscaffold_92G00446560 Rroxscaffold_93G00440970 Rroxscaffold_93G00440990 Rroxscaffold_94G00445800 Rroxscaffold_94G00445870 Rroxscaffold_94G00445950 Rroxscaffold_94G00445990 Rroxscaffold_95G00449230 Rroxscaffold_95G00449260 Rroxscaffold_95G00449270 Rroxscaffold_96G00449080 Rroxscaffold_97G00442330 Rroxscaffold_97G00442350 Rroxscaffold_97G00442360 Rroxscaffold_98G00451340 Rroxscaffold_99G00451190 Rroxscaffold_99G00451210

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 142
AccI GTMKAC 1 cut(s) 218
AccII CGCG 3 cut(s) 133, 153, 268
AciI CCGC 6 cut(s) 131, 133, 142, 151, 268, 279
AclWI GGATC 2 cut(s) 31, 44
AcoI YGGCCR 1 cut(s) 159
AcsI RAATTY 1 cut(s) 254
AfiI CCNNNNNNNGG 4 cut(s) 157, 164, 168, 268
AflII CTTAAG 1 cut(s) 299
AgsI TTSAA 2 cut(s) 212, 259
AluBI AGCT 1 cut(s) 124
AluI AGCT 1 cut(s) 124
Alw21I GWGCWC 1 cut(s) 235
AlwI GGATC 2 cut(s) 31, 44
Ama87I CYCGRG 3 cut(s) 47, 64, 119
AoxI GGCC 1 cut(s) 159
ApeKI GCWGC 1 cut(s) 124
ApoI RAATTY 1 cut(s) 254
ArsI GACNNNNNNTTYG 1 cut(s) 303
Asp700I GAANNNNTTC 1 cut(s) 254
AspLEI GCGC 1 cut(s) 268
AspS9I GGNCC 1 cut(s) 82
AsuC2I CCSGG 2 cut(s) 163, 204
AsuHPI GGTGA 1 cut(s) 122
AvaI CYCGRG 3 cut(s) 47, 64, 119
AvaII GGWCC 1 cut(s) 82
BaeGI GKGCMC 1 cut(s) 78
BamHI GGATCC 1 cut(s) 36
Bbv12I GWGCWC 1 cut(s) 235
BbvI GCAGC 1 cut(s) 111
BceAI ACGGC 1 cut(s) 292
BcnI CCSGG 2 cut(s) 163, 204
BfrI CTTAAG 1 cut(s) 299
BisI GCNGC 3 cut(s) 125, 134, 151
BlsI GCNGC 3 cut(s) 126, 135, 152
Bme1390I CCNGG 2 cut(s) 163, 204
Bme18I GGWCC 1 cut(s) 82
BmeT110I CYCGRG 3 cut(s) 47, 64, 119
BmgT120I GGNCC 1 cut(s) 82
BmiI GGNNCC 3 cut(s) 38, 83, 84
BmrFI CCNGG 2 cut(s) 163, 204
BmrI ACTGGG 2 cut(s) 80, 183
BmuI ACTGGG 2 cut(s) 80, 183
BpuMI CCSGG 2 cut(s) 163, 204
BsaJI CCNNGG 4 cut(s) 46, 131, 162, 202
Bsc4I CCNNNNNNNGG 4 cut(s) 157, 164, 168, 268
Bse118I RCCGGY 1 cut(s) 157
Bse1I ACTGG 2 cut(s) 86, 178
BseDI CCNNGG 4 cut(s) 46, 131, 162, 202
BseLI CCNNNNNNNGG 4 cut(s) 157, 164, 168, 268
BseMII CTCAG 1 cut(s) 236
BseNI ACTGG 2 cut(s) 86, 178
BseSI GKGCMC 1 cut(s) 78
BseX3I CGGCCG 1 cut(s) 159
BseXI GCAGC 1 cut(s) 111
BseYI CCCAGC 1 cut(s) 71
Bsh1236I CGCG 3 cut(s) 133, 153, 268
Bsh1285I CGRYCG 1 cut(s) 162
BshFI GGCC 1 cut(s) 161
BsiEI CGRYCG 1 cut(s) 162
BsiHKAI GWGCWC 1 cut(s) 235
BsiHKCI CYCGRG 3 cut(s) 47, 64, 119
BsiSI CCGG 3 cut(s) 158, 162, 204
BslFI GGGAC 3 cut(s) 68, 74, 180
BslI CCNNNNNNNGG 4 cut(s) 157, 164, 168, 268
BsmFI GGGAC 3 cut(s) 68, 74, 180
BsnI GGCC 1 cut(s) 161
BsoBI CYCGRG 3 cut(s) 47, 64, 119
Bsp1286I GDGCHC 2 cut(s) 78, 235
Bsp143I GATC 1 cut(s) 36
BspACI CCGC 6 cut(s) 131, 133, 142, 151, 268, 279
BspANI GGCC 1 cut(s) 161
BspCNI CTCAG 1 cut(s) 235
BspFNI CGCG 3 cut(s) 133, 153, 268
BspLI GGNNCC 3 cut(s) 38, 83, 84
BspPI GGATC 2 cut(s) 31, 44
BspTI CTTAAG 1 cut(s) 299
BsrBI CCGCTC 1 cut(s) 142
BsrFI RCCGGY 1 cut(s) 157
BsrI ACTGG 2 cut(s) 86, 178
BssAI RCCGGY 1 cut(s) 157
BssECI CCNNGG 4 cut(s) 46, 131, 162, 202
BssMI GATC 1 cut(s) 36
Bst4CI ACNGT 2 cut(s) 216, 230
BstAFI CTTAAG 1 cut(s) 299
BstC8I GCNNGC 2 cut(s) 155, 159
BstDEI CTNAG 1 cut(s) 222
BstDSI CCRYGG 1 cut(s) 131
BstFNI CGCG 3 cut(s) 133, 153, 268
BstHHI GCGC 1 cut(s) 268
BstKTI GATC 1 cut(s) 39
BstMBI GATC 1 cut(s) 36
BstMCI CGRYCG 1 cut(s) 162
BstMWI GCNNNNNNNGC 4 cut(s) 124, 130, 133, 139
BstSCI CCNGG 2 cut(s) 161, 202
BstSLI GKGCMC 1 cut(s) 78
BstUI CGCG 3 cut(s) 133, 153, 268
BstV1I GCAGC 1 cut(s) 111
BstX2I RGATCY 1 cut(s) 36
BstYI RGATCY 1 cut(s) 36
BstZI CGGCCG 1 cut(s) 159
BsuRI GGCC 1 cut(s) 161
BtgI CCRYGG 1 cut(s) 131
Cac8I GCNNGC 2 cut(s) 155, 159
CfoI GCGC 1 cut(s) 268
Cfr10I RCCGGY 1 cut(s) 157
Cfr13I GGNCC 1 cut(s) 82
Cfr42I CCGCGG 1 cut(s) 134
CviJI RGCY 7 cut(s) 63, 71, 104, 124, 161, 194, 308
CviKI_1 RGCY 7 cut(s) 63, 71, 104, 124, 161, 194, 308
DdeI CTNAG 1 cut(s) 222
DpnI GATC 1 cut(s) 38
DpnII GATC 1 cut(s) 36
EaeI YGGCCR 1 cut(s) 159
EagI CGGCCG 1 cut(s) 159
EclXI CGGCCG 1 cut(s) 159
Eco47I GGWCC 1 cut(s) 82
Eco52I CGGCCG 1 cut(s) 159
Eco88I CYCGRG 3 cut(s) 47, 64, 119
EcoO109I RGGNCCY 1 cut(s) 82
FaiI YATR 1 cut(s) 291
FaqI GGGAC 3 cut(s) 68, 74, 180
FauI CCCGC 3 cut(s) 135, 261, 272
FblI GTMKAC 1 cut(s) 218
Fnu4HI GCNGC 3 cut(s) 125, 134, 151
Fsp4HI GCNGC 3 cut(s) 125, 134, 151
GlaI GCGC 1 cut(s) 267
GluI GCNGC 3 cut(s) 125, 134, 151
GsaI CCCAGC 1 cut(s) 75
HaeIII GGCC 1 cut(s) 161
HapII CCGG 3 cut(s) 158, 162, 204
HhaI GCGC 1 cut(s) 268
Hin6I GCGC 1 cut(s) 266
HinP1I GCGC 1 cut(s) 266
HincII GTYRAC 1 cut(s) 219
HindII GTYRAC 1 cut(s) 219
HinfI GANTC 2 cut(s) 220, 293
HpaII CCGG 3 cut(s) 158, 162, 204
HphI GGTGA 1 cut(s) 122
Hpy166II GTNNAC 3 cut(s) 113, 219, 274
Hpy188I TCNGA 2 cut(s) 225, 237
Hpy188III TCNNGA 2 cut(s) 49, 91
Hpy8I GTNNAC 3 cut(s) 113, 219, 274
Hpy99I CGWCG 1 cut(s) 103
HpyAV CCTTC 1 cut(s) 195
HpyCH4III ACNGT 2 cut(s) 216, 230
HpyF10VI GCNNNNNNNGC 4 cut(s) 124, 130, 133, 139
HpyF3I CTNAG 1 cut(s) 222
HspAI GCGC 1 cut(s) 266
KflI GGGWCCC 1 cut(s) 82
KroI GCCGGC 1 cut(s) 157
KroNI GCCGGC 1 cut(s) 159
KspI CCGCGG 1 cut(s) 134
Kzo9I GATC 1 cut(s) 36
LmnI GCTCC 1 cut(s) 187
LpnPI CCDG 6 cut(s) 57, 99, 159, 171, 175, 217
Lsp1109I GCAGC 1 cut(s) 111
MaeIII GTNAC 2 cut(s) 41, 284
MalI GATC 1 cut(s) 38
MbiI CCGCTC 1 cut(s) 142
MboI GATC 1 cut(s) 36
MboII GAAGA 1 cut(s) 262
MflI RGATCY 1 cut(s) 36
MhlI GDGCHC 2 cut(s) 78, 235
MluCI AATT 1 cut(s) 254
MlyI GAGTC 2 cut(s) 214, 287
MnlI CCTC 3 cut(s) 56, 60, 326
MroNI GCCGGC 1 cut(s) 157
MroXI GAANNNNTTC 1 cut(s) 254
MseI TTAA 1 cut(s) 300
MspA1I CMGCKG 1 cut(s) 133
MspCI CTTAAG 1 cut(s) 299
MspI CCGG 3 cut(s) 158, 162, 204
MspR9I CCNGG 2 cut(s) 163, 204
MvnI CGCG 3 cut(s) 133, 153, 268
MwoI GCNNNNNNNGC 4 cut(s) 124, 130, 133, 139
NaeI GCCGGC 1 cut(s) 159
NciI CCSGG 2 cut(s) 163, 204
NdeII GATC 1 cut(s) 36
NgoMIV GCCGGC 1 cut(s) 157
NlaIV GGNNCC 3 cut(s) 38, 83, 84
PaeR7I CTCGAG 2 cut(s) 64, 119
PdiI GCCGGC 1 cut(s) 159
PdmI GAANNNNTTC 1 cut(s) 254
PkrI GCNGC 3 cut(s) 126, 135, 152
PleI GAGTC 2 cut(s) 214, 287
PpsI GAGTC 2 cut(s) 214, 287
PpuMI RGGWCCY 1 cut(s) 82
Psp5II RGGWCCY 1 cut(s) 82
PspFI CCCAGC 1 cut(s) 71
PspN4I GGNNCC 3 cut(s) 38, 83, 84
PspPI GGNCC 1 cut(s) 82
PspPPI RGGWCCY 1 cut(s) 82
PspXI VCTCGAGB 2 cut(s) 64, 119
PsuI RGATCY 1 cut(s) 36
SacII CCGCGG 1 cut(s) 134
SalI GTCGAC 1 cut(s) 217
SaqAI TTAA 1 cut(s) 300
SatI GCNGC 3 cut(s) 125, 134, 151
Sau3AI GATC 1 cut(s) 36
Sau96I GGNCC 1 cut(s) 82
SchI GAGTC 2 cut(s) 214, 287
ScrFI CCNGG 2 cut(s) 163, 204
SduI GDGCHC 2 cut(s) 78, 235
SetI ASST 3 cut(s) 48, 126, 306
Sfr274I CTCGAG 2 cut(s) 64, 119
Sfr303I CCGCGG 1 cut(s) 134
SgrBI CCGCGG 1 cut(s) 134
SinI GGWCC 1 cut(s) 82
SlaI CTCGAG 2 cut(s) 64, 119
SmlI CTYRAG 3 cut(s) 64, 119, 299
SmoI CTYRAG 3 cut(s) 64, 119, 299
Sse9I AATT 1 cut(s) 254
SsiI CCGC 6 cut(s) 131, 133, 142, 151, 268, 279
StyD4I CCNGG 2 cut(s) 161, 202
TaaI ACNGT 2 cut(s) 216, 230
TaqI TCGA 3 cut(s) 65, 120, 218
TasI AATT 1 cut(s) 254
TauI GCSGC 2 cut(s) 136, 153
Tru1I TTAA 1 cut(s) 300
Tru9I TTAA 1 cut(s) 300
TseI GCWGC 1 cut(s) 124
TspGWI ACGGA 2 cut(s) 29, 184
Vha464I CTTAAG 1 cut(s) 299
VpaK11BI GGWCC 1 cut(s) 82
XapI RAATTY 1 cut(s) 254
XhoI CTCGAG 2 cut(s) 64, 119
XmiI GTMKAC 1 cut(s) 218
XmnI GAANNNNTTC 1 cut(s) 254
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.