Rroxscaffold_80G00450300

protein Sb1514s002020 source

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000080
OG0000104
Physical Location & Seq
Forward (+)
15783 .. 16492
710 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_80G00450300.1

Sequence Viewer

Length: 285 bp
ATGAACCGGAAGCCGGGTTACGGTGCCCAACTACGCGCTAACCTAGAACCCACAAAGGGTGTTGGTCGATTAAGACGAGCAGGACGGTGGTCATGGAAGTCGAAATCCGCTAAGGAGTGTCCTGCCCACCCCGGAAACGGCTCAGCCGGAGGTAGGGTCCAGCGGCTGGAAGAGCACCGCACGTCGCGTGGTGTCCGGTGCGCCCCGGCGGCCCTTGAAAATCCGGAGGACCGAGTGCCATTCACGCCCGGTCGTACTCATAACCGCATCAGGTCTCCAAGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

94

Amino Acids

10.45

Weight (kDa)

11.67

Isoelectric Point (pI)

55.15

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000104)

Species Orthologous Gene IDs
pyrus_communis pycom2246g00050 pycom2246g00060 pycom2246g00070 pycom2246g00100 pycom2246g00170 pycom2575g00020 pycom520g01350
rosa_roxburghii Rroxscaffold_102G00450880 Rroxscaffold_102G00450940 Rroxscaffold_103G00450570 Rroxscaffold_104G00444660 Rroxscaffold_104G00444710 Rroxscaffold_104G00444740 Rroxscaffold_104G00444800 Rroxscaffold_104G00444860 Rroxscaffold_105G00447090 Rroxscaffold_105G00447190 Rroxscaffold_105G00447230 Rroxscaffold_106G00451430 Rroxscaffold_107G00442440 Rroxscaffold_107G00442550 Rroxscaffold_107G00442640 Rroxscaffold_107G00442690 Rroxscaffold_111G00451560 Rroxscaffold_112G00451580 Rroxscaffold_113G00451620 Rroxscaffold_115G00451690 Rroxscaffold_118G00451780 Rroxscaffold_122G00451870 Rroxscaffold_123G00451910 Rroxscaffold_124G00451960 Rroxscaffold_128G00452050 Rroxscaffold_12G00450640 Rroxscaffold_131G00452100 Rroxscaffold_132G00452130 Rroxscaffold_138G00452190 Rroxscaffold_13G00448670 Rroxscaffold_14G00441890 Rroxscaffold_14G00441960 Rroxscaffold_14G00442010 Rroxscaffold_14G00442070 Rroxscaffold_15G00447460 Rroxscaffold_15G00447510 Rroxscaffold_15G00447580 Rroxscaffold_162G00450750 Rroxscaffold_17G00435460 Rroxscaffold_17G00435510 Rroxscaffold_17G00435570 Rroxscaffold_17G00435640 Rroxscaffold_17G00435910 Rroxscaffold_18G00446090 Rroxscaffold_18G00446110 Rroxscaffold_18G00446170 Rroxscaffold_19G00448930 Rroxscaffold_1G00000010 Rroxscaffold_1G00000090 Rroxscaffold_1G00000130 Rroxscaffold_20G00445030 Rroxscaffold_20G00445040 Rroxscaffold_20G00445070 Rroxscaffold_20G00445110 Rroxscaffold_21G00439440 Rroxscaffold_21G00439460 Rroxscaffold_21G00439470 Rroxscaffold_21G00439520 Rroxscaffold_21G00439570 Rroxscaffold_21G00439660 Rroxscaffold_22G00439850 Rroxscaffold_22G00439990 Rroxscaffold_22G00440030 Rroxscaffold_25G00450140 Rroxscaffold_25G00450170 Rroxscaffold_26G00447770 Rroxscaffold_27G00446650 Rroxscaffold_29G00441730 Rroxscaffold_29G00441740 Rroxscaffold_29G00441760 Rroxscaffold_29G00441780 Rroxscaffold_29G00441830 Rroxscaffold_29G00441870 Rroxscaffold_30G00449490 Rroxscaffold_30G00449510 Rroxscaffold_31G00438130 Rroxscaffold_31G00438170 Rroxscaffold_31G00438270 Rroxscaffold_32G00442790 Rroxscaffold_32G00442800 Rroxscaffold_32G00442840 Rroxscaffold_33G00439700 Rroxscaffold_33G00439710 Rroxscaffold_34G00443170 Rroxscaffold_34G00443210 Rroxscaffold_34G00443280 Rroxscaffold_34G00443310 Rroxscaffold_35G00441010 Rroxscaffold_35G00441120 Rroxscaffold_35G00441180 Rroxscaffold_35G00441260 Rroxscaffold_35G00441290 Rroxscaffold_36G00440070 Rroxscaffold_36G00440110 Rroxscaffold_36G00440140 Rroxscaffold_36G00440190 Rroxscaffold_37G00445180 Rroxscaffold_37G00445190 Rroxscaffold_37G00445230 Rroxscaffold_37G00445240 Rroxscaffold_37G00445270 Rroxscaffold_38G00444450 Rroxscaffold_38G00444530 Rroxscaffold_38G00444570 Rroxscaffold_38G00444600 Rroxscaffold_38G00444620 Rroxscaffold_39G00448260 Rroxscaffold_40G00447720 Rroxscaffold_43G00449810 Rroxscaffold_43G00449840 Rroxscaffold_43G00449900 Rroxscaffold_44G00440460 Rroxscaffold_44G00440470 Rroxscaffold_44G00440510 Rroxscaffold_44G00440600 Rroxscaffold_44G00440640 Rroxscaffold_45G00438810 Rroxscaffold_45G00438840 Rroxscaffold_45G00438870 Rroxscaffold_45G00438890 Rroxscaffold_45G00438980 Rroxscaffold_46G00448720 Rroxscaffold_46G00448740 Rroxscaffold_47G00443950 Rroxscaffold_47G00443980 Rroxscaffold_47G00444000 Rroxscaffold_47G00444090 Rroxscaffold_48G00448430 Rroxscaffold_48G00448470 Rroxscaffold_48G00448510 Rroxscaffold_49G00438600 Rroxscaffold_49G00438620 Rroxscaffold_49G00438680 Rroxscaffold_49G00438710 Rroxscaffold_49G00438740 Rroxscaffold_49G00438780 Rroxscaffold_50G00444160 Rroxscaffold_50G00444260 Rroxscaffold_50G00444290 Rroxscaffold_50G00444370 Rroxscaffold_50G00444400 Rroxscaffold_53G00449700 Rroxscaffold_53G00449730 Rroxscaffold_53G00449740 Rroxscaffold_54G00443410 Rroxscaffold_54G00443460 Rroxscaffold_54G00443490 Rroxscaffold_54G00443530 Rroxscaffold_54G00443580 Rroxscaffold_54G00443610 Rroxscaffold_54G00443670 Rroxscaffold_55G00450070 Rroxscaffold_55G00450130 Rroxscaffold_56G00450950 Rroxscaffold_58G00449000 Rroxscaffold_58G00449050 Rroxscaffold_59G00442150 Rroxscaffold_59G00442180 Rroxscaffold_59G00442250 Rroxscaffold_59G00442270 Rroxscaffold_59G00442280 Rroxscaffold_60G00448270 Rroxscaffold_60G00448290 Rroxscaffold_60G00448330 Rroxscaffold_60G00448400 Rroxscaffold_61G00449970 Rroxscaffold_62G00437930 Rroxscaffold_62G00438030 Rroxscaffold_64G00450690 Rroxscaffold_64G00450700 Rroxscaffold_65G00445280 Rroxscaffold_65G00445350 Rroxscaffold_65G00445390 Rroxscaffold_66G00437570 Rroxscaffold_66G00437600 Rroxscaffold_66G00437620 Rroxscaffold_66G00437690 Rroxscaffold_66G00437730 Rroxscaffold_66G00437770 Rroxscaffold_66G00437860 Rroxscaffold_68G00447000 Rroxscaffold_68G00447040 Rroxscaffold_69G00446680 Rroxscaffold_69G00446780 Rroxscaffold_69G00446790 Rroxscaffold_69G00446810 Rroxscaffold_6G00387760 Rroxscaffold_6G00387790 Rroxscaffold_6G00387830 Rroxscaffold_6G00387840 Rroxscaffold_70G00446290 Rroxscaffold_70G00446390 Rroxscaffold_71G00445730 Rroxscaffold_71G00445750 Rroxscaffold_72G00449340 Rroxscaffold_72G00449380 Rroxscaffold_73G00439090 Rroxscaffold_73G00439120 Rroxscaffold_73G00439190 Rroxscaffold_73G00439210 Rroxscaffold_73G00439250 Rroxscaffold_74G00442890 Rroxscaffold_74G00442960 Rroxscaffold_75G00447280 Rroxscaffold_75G00447300 Rroxscaffold_75G00447340 Rroxscaffold_75G00447390 Rroxscaffold_75G00447410 Rroxscaffold_75G00447440 Rroxscaffold_76G00448590 Rroxscaffold_78G00449630 Rroxscaffold_78G00449640 Rroxscaffold_79G00450250 Rroxscaffold_80G00450280 Rroxscaffold_80G00450300 Rroxscaffold_80G00450310 Rroxscaffold_81G00450490 Rroxscaffold_82G00450810 Rroxscaffold_86G00451260 Rroxscaffold_87G00451290 Rroxscaffold_87G00451300 Rroxscaffold_87G00451320 Rroxscaffold_88G00451390 Rroxscaffold_90G00448810 Rroxscaffold_91G00442980 Rroxscaffold_91G00443040 Rroxscaffold_92G00446460 Rroxscaffold_92G00446490 Rroxscaffold_92G00446500 Rroxscaffold_92G00446520 Rroxscaffold_92G00446540 Rroxscaffold_92G00446560 Rroxscaffold_93G00440970 Rroxscaffold_93G00440990 Rroxscaffold_94G00445800 Rroxscaffold_94G00445870 Rroxscaffold_94G00445950 Rroxscaffold_94G00445990 Rroxscaffold_95G00449230 Rroxscaffold_95G00449260 Rroxscaffold_95G00449270 Rroxscaffold_96G00449080 Rroxscaffold_97G00442330 Rroxscaffold_97G00442350 Rroxscaffold_97G00442360 Rroxscaffold_98G00451340 Rroxscaffold_99G00451190 Rroxscaffold_99G00451210

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 23
AccB7I CCANNNNNTGG 1 cut(s) 166
AccII CGCG 2 cut(s) 36, 187
AccIII TCCGGA 1 cut(s) 223
AciI CCGC 5 cut(s) 108, 163, 178, 209, 265
AfaI GTAC 1 cut(s) 256
AfiI CCNNNNNNNGG 6 cut(s) 13, 20, 56, 137, 153, 166
AgsI TTSAA 1 cut(s) 218
AjiI CACGTC 1 cut(s) 183
Alw21I GWGCWC 1 cut(s) 177
Alw26I GTCTC 1 cut(s) 279
AlwNI CAGNNNCTG 1 cut(s) 166
Aor13HI TCCGGA 1 cut(s) 223
AoxI GGCC 1 cut(s) 210
AspLEI GCGC 2 cut(s) 38, 203
AspS9I GGNCC 3 cut(s) 157, 211, 229
AsuC2I CCSGG 4 cut(s) 15, 132, 206, 249
AvaII GGWCC 2 cut(s) 157, 229
BaeGI GKGCMC 1 cut(s) 28
BanI GGYRCC 1 cut(s) 23
BarI GAAGNNNNNNTAC 1 cut(s) 34
Bbv12I GWGCWC 1 cut(s) 177
BceAI ACGGC 1 cut(s) 154
BcnI CCSGG 4 cut(s) 15, 132, 206, 249
BcoDI GTCTC 1 cut(s) 279
BfaI CTAG 1 cut(s) 44
BglI GCCNNNNNGGC 1 cut(s) 209
BisI GCNGC 2 cut(s) 164, 210
BlpI GCTNAGC 1 cut(s) 142
BlsI GCNGC 2 cut(s) 165, 211
Bme1390I CCNGG 4 cut(s) 15, 132, 206, 249
Bme18I GGWCC 2 cut(s) 157, 229
BmgBI CACGTC 1 cut(s) 183
BmgT120I GGNCC 3 cut(s) 157, 211, 229
BmiI GGNNCC 2 cut(s) 25, 158
BmrFI CCNGG 4 cut(s) 15, 132, 206, 249
BmsI GCATC 1 cut(s) 276
BoxI GACNNNNGTC 1 cut(s) 88
Bpu10I CCTNAGC 1 cut(s) 111
Bpu1102I GCTNAGC 1 cut(s) 142
BpuMI CCSGG 4 cut(s) 15, 132, 206, 249
BsaI GGTCTC 1 cut(s) 279
BsaJI CCNNGG 3 cut(s) 130, 204, 278
BsaWI WCCGGW 3 cut(s) 6, 195, 223
BsaXI ACNNNNNCTCC 2 cut(s) 141, 171
Bsc4I CCNNNNNNNGG 6 cut(s) 13, 20, 56, 137, 153, 166
BseAI TCCGGA 1 cut(s) 223
BseDI CCNNGG 3 cut(s) 130, 204, 278
BseLI CCNNNNNNNGG 6 cut(s) 13, 20, 56, 137, 153, 166
BseMII CTCAG 1 cut(s) 156
BseSI GKGCMC 1 cut(s) 28
Bsh1236I CGCG 2 cut(s) 36, 187
Bsh1285I CGRYCG 1 cut(s) 253
BshFI GGCC 1 cut(s) 212
BshNI GGYRCC 1 cut(s) 23
BsiEI CGRYCG 1 cut(s) 253
BsiHKAI GWGCWC 1 cut(s) 177
BsiSI CCGG 8 cut(s) 7, 14, 132, 147, 196, 206, 224, 249
BslI CCNNNNNNNGG 6 cut(s) 13, 20, 56, 137, 153, 166
BsmAI GTCTC 1 cut(s) 279
BsnI GGCC 1 cut(s) 212
Bso31I GGTCTC 1 cut(s) 279
Bsp1286I GDGCHC 2 cut(s) 28, 177
Bsp13I TCCGGA 1 cut(s) 223
Bsp1720I GCTNAGC 1 cut(s) 142
BspACI CCGC 5 cut(s) 108, 163, 178, 209, 265
BspANI GGCC 1 cut(s) 212
BspCNI CTCAG 1 cut(s) 155
BspEI TCCGGA 1 cut(s) 223
BspFNI CGCG 2 cut(s) 36, 187
BspLI GGNNCC 2 cut(s) 25, 158
BspQI GCTCTTC 1 cut(s) 165
BspT107I GGYRCC 1 cut(s) 23
BspTNI GGTCTC 1 cut(s) 279
BssECI CCNNGG 3 cut(s) 130, 204, 278
BssT1I CCWWGG 1 cut(s) 278
Bst4CI ACNGT 2 cut(s) 23, 87
Bst6I CTCTTC 1 cut(s) 165
BstDEI CTNAG 2 cut(s) 111, 142
BstFNI CGCG 2 cut(s) 36, 187
BstHHI GCGC 2 cut(s) 38, 203
BstMAI GTCTC 1 cut(s) 279
BstMCI CGRYCG 1 cut(s) 253
BstMWI GCNNNNNNNGC 3 cut(s) 172, 209, 244
BstPAI GACNNNNGTC 1 cut(s) 88
BstSCI CCNGG 4 cut(s) 13, 130, 204, 247
BstSLI GKGCMC 1 cut(s) 28
BstUI CGCG 2 cut(s) 36, 187
BsuRI GGCC 1 cut(s) 212
BtrI CACGTC 1 cut(s) 183
CaiI CAGNNNCTG 1 cut(s) 166
CfoI GCGC 2 cut(s) 38, 203
Cfr13I GGNCC 3 cut(s) 157, 211, 229
Csp6I GTAC 1 cut(s) 255
CviAII CATG 1 cut(s) 93
CviJI RGCY 5 cut(s) 13, 141, 146, 166, 212
CviKI_1 RGCY 5 cut(s) 13, 141, 146, 166, 212
CviQI GTAC 1 cut(s) 255
DdeI CTNAG 2 cut(s) 111, 142
Eam1104I CTCTTC 1 cut(s) 165
EarI CTCTTC 1 cut(s) 165
Eco130I CCWWGG 1 cut(s) 278
Eco31I GGTCTC 1 cut(s) 279
Eco47I GGWCC 2 cut(s) 157, 229
EcoT14I CCWWGG 1 cut(s) 278
ErhI CCWWGG 1 cut(s) 278
FaeI CATG 1 cut(s) 96
FaiI YATR 2 cut(s) 94, 261
FatI CATG 1 cut(s) 92
Fnu4HI GCNGC 2 cut(s) 164, 210
Fsp4HI GCNGC 2 cut(s) 164, 210
FspBI CTAG 1 cut(s) 44
GlaI GCGC 2 cut(s) 37, 202
GluI GCNGC 2 cut(s) 164, 210
HaeIII GGCC 1 cut(s) 212
HapII CCGG 8 cut(s) 7, 14, 132, 147, 196, 206, 224, 249
HhaI GCGC 2 cut(s) 38, 203
Hin1II CATG 1 cut(s) 96
Hin6I GCGC 2 cut(s) 36, 201
HinP1I GCGC 2 cut(s) 36, 201
HpaII CCGG 8 cut(s) 7, 14, 132, 147, 196, 206, 224, 249
Hpy188III TCNNGA 1 cut(s) 224
Hpy99I CGWCG 1 cut(s) 187
HpyCH4III ACNGT 2 cut(s) 23, 87
HpyCH4IV ACGT 1 cut(s) 182
HpyF10VI GCNNNNNNNGC 3 cut(s) 172, 209, 244
HpyF3I CTNAG 2 cut(s) 111, 142
HpySE526I ACGT 1 cut(s) 182
Hsp92II CATG 1 cut(s) 96
HspAI GCGC 2 cut(s) 36, 201
Kpn2I TCCGGA 1 cut(s) 223
LguI GCTCTTC 1 cut(s) 165
LweI GCATC 1 cut(s) 276
MaeI CTAG 1 cut(s) 44
MaeII ACGT 1 cut(s) 182
MaeIII GTNAC 1 cut(s) 17
MboII GAAGA 1 cut(s) 182
MhlI GDGCHC 2 cut(s) 28, 177
MnlI CCTC 2 cut(s) 143, 220
MroI TCCGGA 1 cut(s) 223
MseI TTAA 1 cut(s) 71
MspA1I CMGCKG 1 cut(s) 163
MspI CCGG 8 cut(s) 7, 14, 132, 147, 196, 206, 224, 249
MspR9I CCNGG 4 cut(s) 15, 132, 206, 249
MvnI CGCG 2 cut(s) 36, 187
MwoI GCNNNNNNNGC 3 cut(s) 172, 209, 244
NciI CCSGG 4 cut(s) 15, 132, 206, 249
NlaIII CATG 1 cut(s) 96
NlaIV GGNNCC 2 cut(s) 25, 158
PciSI GCTCTTC 1 cut(s) 165
PcsI WCGNNNNNNNCGW 1 cut(s) 73
PflMI CCANNNNNTGG 1 cut(s) 166
PkrI GCNGC 2 cut(s) 165, 211
PshAI GACNNNNGTC 1 cut(s) 88
PspN4I GGNNCC 2 cut(s) 25, 158
PspPI GGNCC 3 cut(s) 157, 211, 229
PstNI CAGNNNCTG 1 cut(s) 166
RsaI GTAC 1 cut(s) 256
RsaNI GTAC 1 cut(s) 255
SapI GCTCTTC 1 cut(s) 165
SaqAI TTAA 1 cut(s) 71
SatI GCNGC 2 cut(s) 164, 210
Sau96I GGNCC 3 cut(s) 157, 211, 229
ScrFI CCNGG 4 cut(s) 15, 132, 206, 249
SduI GDGCHC 2 cut(s) 28, 177
SetI ASST 5 cut(s) 45, 154, 185, 275, 284
SfaNI GCATC 1 cut(s) 276
SinI GGWCC 2 cut(s) 157, 229
SsiI CCGC 5 cut(s) 108, 163, 178, 209, 265
SspMI CTAG 1 cut(s) 44
StyD4I CCNGG 4 cut(s) 13, 130, 204, 247
StyI CCWWGG 1 cut(s) 278
TaaI ACNGT 2 cut(s) 23, 87
TaiI ACGT 1 cut(s) 185
TaqI TCGA 2 cut(s) 67, 101
TaqII GACCGA 1 cut(s) 246
TauI GCSGC 2 cut(s) 166, 212
Tru1I TTAA 1 cut(s) 71
Tru9I TTAA 1 cut(s) 71
TspDTI ATGAA 1 cut(s) 17
Van91I CCANNNNNTGG 1 cut(s) 166
VpaK11BI GGWCC 2 cut(s) 157, 229
XspI CTAG 1 cut(s) 44
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.