Rroxscaffold_1G00000010

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
OG0000104
Physical Location & Seq
Reverse (-)
7718 .. 13649
5932 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00000010.1

Sequence Viewer

Length: 1314 bp
ATGGGTGGTGGTGCATGGCCGTTCTTAGTTGGTGGAGCGATTTGTCTGGTTAATTCCGTTAACGAACGAGACCTCGGCCTGCTAACTAGCTATGCGGAGGTCTCCTCCGCGGCCAGCTTCTTAGAGGGACTATGGCCGCTTAGGCCAAGGAAGTTTGAGGCAATAACAGTACGGAGAAGCGTCCTCGAGAGGCGGACCGGGAACAAGTCCCCTGGAAGGGGCGCCATAGAGGGTGAGAGCCCCGTTGTGCCGGACCTGTCGCACCACGGCGTCGGCGAGTCGGGTTGTTTGGGAATGCAGCCCCGATCGGGCGCGGATGGGGGCGGCGATGCGCCTCGGTCGGATGTGGAACGGTCACAAGCCGGTCCGCCACTCGACTCGGGGCGTGGACCGTTACGGATTGCGGCGGCGGCCAAAGCCGGGCTGTTGATATGCCGTGGAGACGTCGTCGACGCGATCATGGTAGGCAGCATGCGCCGTCTCGGCGTGCTTCGGCATCTGCGTGCTCTGGACGGCGTGGCTGCTTTGTTGAGCCACGCCAAGGAATCGAGAGCTCCAAGTGGGCCATTTTTGCCTGCCCACCACTGGAAACGGCTCGGCGGAGGTAGGGTCCGGCGGGCTGGAAGAGCACCGCACGTCGCGTGGTGTCGGCAAGGGAAGTCGGCAAAATGGATCCGTAACCTCGGGAAAAGGATTGGCTGCGAGGGCTGGGCACGGGGGTCCCGAGTCCCGAACCCGTCGGCTGTCGGTGAACTGCTCGAGCTGCTTCCGCGGCGAGAGCGGGTCGCCGCGTGCGGCCGGGGGACGGACTGGGAACGCTCCTTCGGGGGCTTTCCCGGGCGTTCAACGGTCGACTCGGGCTGGCGAGTCTCTCACACAATATGTTTTGCTCGACCTGCTTGGCACTTGACGGTCATCTCGGACTGCGCGGCCTTGCGACGGACGCTTCCTAACGAATGCGATGCCAAGCCAAGGCTAGGCAATGCCGTGGGCGACAGAGGCTTCCTAGCGAAGGATAATGCAATGCGAGCCAAGGCTTTGCCAAGACAATGCCAAGGCTTGCTAGTGAGGCTAATGCAATGTCAAGCCAAGGCTTGCCAAGACAATGCCAAGGCTAGGCAATGCCATGGCCGTCACCACCATGCGAGGCTAATGCAATGCCAAGACAATGGGCAAGGCTTGCCAAGACAATGGGCAATGCTTGCTAGCGAGGCTAATGCAATGCCAAGACAATGGCTAATGCTTGCTAGCGAGGCTAATGCAATGACAAGACAATGGCCAAGGCTTGCCAAGACAATGGCTATTGCTTGCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

437

Amino Acids

47.21

Weight (kDa)

10.64

Isoelectric Point (pI)

50.61

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000104)

Species Orthologous Gene IDs
pyrus_communis pycom2246g00050 pycom2246g00060 pycom2246g00070 pycom2246g00100 pycom2246g00170 pycom2575g00020 pycom520g01350
rosa_roxburghii Rroxscaffold_102G00450880 Rroxscaffold_102G00450940 Rroxscaffold_103G00450570 Rroxscaffold_104G00444660 Rroxscaffold_104G00444710 Rroxscaffold_104G00444740 Rroxscaffold_104G00444800 Rroxscaffold_104G00444860 Rroxscaffold_105G00447090 Rroxscaffold_105G00447190 Rroxscaffold_105G00447230 Rroxscaffold_106G00451430 Rroxscaffold_107G00442440 Rroxscaffold_107G00442550 Rroxscaffold_107G00442640 Rroxscaffold_107G00442690 Rroxscaffold_111G00451560 Rroxscaffold_112G00451580 Rroxscaffold_113G00451620 Rroxscaffold_115G00451690 Rroxscaffold_118G00451780 Rroxscaffold_122G00451870 Rroxscaffold_123G00451910 Rroxscaffold_124G00451960 Rroxscaffold_128G00452050 Rroxscaffold_12G00450640 Rroxscaffold_131G00452100 Rroxscaffold_132G00452130 Rroxscaffold_138G00452190 Rroxscaffold_13G00448670 Rroxscaffold_14G00441890 Rroxscaffold_14G00441960 Rroxscaffold_14G00442010 Rroxscaffold_14G00442070 Rroxscaffold_15G00447460 Rroxscaffold_15G00447510 Rroxscaffold_15G00447580 Rroxscaffold_162G00450750 Rroxscaffold_17G00435460 Rroxscaffold_17G00435510 Rroxscaffold_17G00435570 Rroxscaffold_17G00435640 Rroxscaffold_17G00435910 Rroxscaffold_18G00446090 Rroxscaffold_18G00446110 Rroxscaffold_18G00446170 Rroxscaffold_19G00448930 Rroxscaffold_1G00000010 Rroxscaffold_1G00000090 Rroxscaffold_1G00000130 Rroxscaffold_20G00445030 Rroxscaffold_20G00445040 Rroxscaffold_20G00445070 Rroxscaffold_20G00445110 Rroxscaffold_21G00439440 Rroxscaffold_21G00439460 Rroxscaffold_21G00439470 Rroxscaffold_21G00439520 Rroxscaffold_21G00439570 Rroxscaffold_21G00439660 Rroxscaffold_22G00439850 Rroxscaffold_22G00439990 Rroxscaffold_22G00440030 Rroxscaffold_25G00450140 Rroxscaffold_25G00450170 Rroxscaffold_26G00447770 Rroxscaffold_27G00446650 Rroxscaffold_29G00441730 Rroxscaffold_29G00441740 Rroxscaffold_29G00441760 Rroxscaffold_29G00441780 Rroxscaffold_29G00441830 Rroxscaffold_29G00441870 Rroxscaffold_30G00449490 Rroxscaffold_30G00449510 Rroxscaffold_31G00438130 Rroxscaffold_31G00438170 Rroxscaffold_31G00438270 Rroxscaffold_32G00442790 Rroxscaffold_32G00442800 Rroxscaffold_32G00442840 Rroxscaffold_33G00439700 Rroxscaffold_33G00439710 Rroxscaffold_34G00443170 Rroxscaffold_34G00443210 Rroxscaffold_34G00443280 Rroxscaffold_34G00443310 Rroxscaffold_35G00441010 Rroxscaffold_35G00441120 Rroxscaffold_35G00441180 Rroxscaffold_35G00441260 Rroxscaffold_35G00441290 Rroxscaffold_36G00440070 Rroxscaffold_36G00440110 Rroxscaffold_36G00440140 Rroxscaffold_36G00440190 Rroxscaffold_37G00445180 Rroxscaffold_37G00445190 Rroxscaffold_37G00445230 Rroxscaffold_37G00445240 Rroxscaffold_37G00445270 Rroxscaffold_38G00444450 Rroxscaffold_38G00444530 Rroxscaffold_38G00444570 Rroxscaffold_38G00444600 Rroxscaffold_38G00444620 Rroxscaffold_39G00448260 Rroxscaffold_40G00447720 Rroxscaffold_43G00449810 Rroxscaffold_43G00449840 Rroxscaffold_43G00449900 Rroxscaffold_44G00440460 Rroxscaffold_44G00440470 Rroxscaffold_44G00440510 Rroxscaffold_44G00440600 Rroxscaffold_44G00440640 Rroxscaffold_45G00438810 Rroxscaffold_45G00438840 Rroxscaffold_45G00438870 Rroxscaffold_45G00438890 Rroxscaffold_45G00438980 Rroxscaffold_46G00448720 Rroxscaffold_46G00448740 Rroxscaffold_47G00443950 Rroxscaffold_47G00443980 Rroxscaffold_47G00444000 Rroxscaffold_47G00444090 Rroxscaffold_48G00448430 Rroxscaffold_48G00448470 Rroxscaffold_48G00448510 Rroxscaffold_49G00438600 Rroxscaffold_49G00438620 Rroxscaffold_49G00438680 Rroxscaffold_49G00438710 Rroxscaffold_49G00438740 Rroxscaffold_49G00438780 Rroxscaffold_50G00444160 Rroxscaffold_50G00444260 Rroxscaffold_50G00444290 Rroxscaffold_50G00444370 Rroxscaffold_50G00444400 Rroxscaffold_53G00449700 Rroxscaffold_53G00449730 Rroxscaffold_53G00449740 Rroxscaffold_54G00443410 Rroxscaffold_54G00443460 Rroxscaffold_54G00443490 Rroxscaffold_54G00443530 Rroxscaffold_54G00443580 Rroxscaffold_54G00443610 Rroxscaffold_54G00443670 Rroxscaffold_55G00450070 Rroxscaffold_55G00450130 Rroxscaffold_56G00450950 Rroxscaffold_58G00449000 Rroxscaffold_58G00449050 Rroxscaffold_59G00442150 Rroxscaffold_59G00442180 Rroxscaffold_59G00442250 Rroxscaffold_59G00442270 Rroxscaffold_59G00442280 Rroxscaffold_60G00448270 Rroxscaffold_60G00448290 Rroxscaffold_60G00448330 Rroxscaffold_60G00448400 Rroxscaffold_61G00449970 Rroxscaffold_62G00437930 Rroxscaffold_62G00438030 Rroxscaffold_64G00450690 Rroxscaffold_64G00450700 Rroxscaffold_65G00445280 Rroxscaffold_65G00445350 Rroxscaffold_65G00445390 Rroxscaffold_66G00437570 Rroxscaffold_66G00437600 Rroxscaffold_66G00437620 Rroxscaffold_66G00437690 Rroxscaffold_66G00437730 Rroxscaffold_66G00437770 Rroxscaffold_66G00437860 Rroxscaffold_68G00447000 Rroxscaffold_68G00447040 Rroxscaffold_69G00446680 Rroxscaffold_69G00446780 Rroxscaffold_69G00446790 Rroxscaffold_69G00446810 Rroxscaffold_6G00387760 Rroxscaffold_6G00387790 Rroxscaffold_6G00387830 Rroxscaffold_6G00387840 Rroxscaffold_70G00446290 Rroxscaffold_70G00446390 Rroxscaffold_71G00445730 Rroxscaffold_71G00445750 Rroxscaffold_72G00449340 Rroxscaffold_72G00449380 Rroxscaffold_73G00439090 Rroxscaffold_73G00439120 Rroxscaffold_73G00439190 Rroxscaffold_73G00439210 Rroxscaffold_73G00439250 Rroxscaffold_74G00442890 Rroxscaffold_74G00442960 Rroxscaffold_75G00447280 Rroxscaffold_75G00447300 Rroxscaffold_75G00447340 Rroxscaffold_75G00447390 Rroxscaffold_75G00447410 Rroxscaffold_75G00447440 Rroxscaffold_76G00448590 Rroxscaffold_78G00449630 Rroxscaffold_78G00449640 Rroxscaffold_79G00450250 Rroxscaffold_80G00450280 Rroxscaffold_80G00450300 Rroxscaffold_80G00450310 Rroxscaffold_81G00450490 Rroxscaffold_82G00450810 Rroxscaffold_86G00451260 Rroxscaffold_87G00451290 Rroxscaffold_87G00451300 Rroxscaffold_87G00451320 Rroxscaffold_88G00451390 Rroxscaffold_90G00448810 Rroxscaffold_91G00442980 Rroxscaffold_91G00443040 Rroxscaffold_92G00446460 Rroxscaffold_92G00446490 Rroxscaffold_92G00446500 Rroxscaffold_92G00446520 Rroxscaffold_92G00446540 Rroxscaffold_92G00446560 Rroxscaffold_93G00440970 Rroxscaffold_93G00440990 Rroxscaffold_94G00445800 Rroxscaffold_94G00445870 Rroxscaffold_94G00445950 Rroxscaffold_94G00445990 Rroxscaffold_95G00449230 Rroxscaffold_95G00449260 Rroxscaffold_95G00449270 Rroxscaffold_96G00449080 Rroxscaffold_97G00442330 Rroxscaffold_97G00442350 Rroxscaffold_97G00442360 Rroxscaffold_98G00451340 Rroxscaffold_99G00451190 Rroxscaffold_99G00451210

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 447
Acc36I ACCTGC 1 cut(s) 904
AccB1I GGYRCC 1 cut(s) 221
AccBSI CCGCTC 1 cut(s) 781
AccI GTMKAC 2 cut(s) 450, 852
AccII CGCG 7 cut(s) 110, 314, 455, 641, 772, 791, 929
AclWI GGATC 2 cut(s) 667, 680
AcoI YGGCCR 7 cut(s) 17, 111, 134, 411, 796, 1129, 1277
AcyI GRCGYC 3 cut(s) 222, 270, 444
AfaI GTAC 1 cut(s) 171
AgsI TTSAA 1 cut(s) 846
AjiI CACGTC 1 cut(s) 637
AjnI CCWGG 1 cut(s) 211
AluBI AGCT 4 cut(s) 90, 117, 554, 763
AluI AGCT 4 cut(s) 90, 117, 554, 763
Alw21I GWGCWC 3 cut(s) 508, 556, 631
Alw26I GTCTC 5 cut(s) 63, 106, 435, 485, 874
AlwI GGATC 2 cut(s) 667, 680
Ama87I CYCGRG 7 cut(s) 185, 379, 683, 723, 758, 836, 856
ApeKI GCWGC 5 cut(s) 298, 468, 521, 699, 763
AspLEI GCGC 5 cut(s) 224, 314, 334, 477, 929
AspS9I GGNCC 7 cut(s) 195, 253, 365, 389, 563, 610, 720
AsuC2I CCSGG 5 cut(s) 199, 421, 800, 837, 838
AsuHPI GGTGA 3 cut(s) 245, 761, 1127
AsuNHI GCTAGC 2 cut(s) 1205, 1247
AvaI CYCGRG 7 cut(s) 185, 379, 683, 723, 758, 836, 856
AvaII GGWCC 6 cut(s) 195, 253, 365, 389, 610, 720
BaeGI GKGCMC 1 cut(s) 715
BalI TGGCCA 1 cut(s) 1279
BamHI GGATCC 1 cut(s) 672
BanI GGYRCC 1 cut(s) 221
BanII GRGCYC 2 cut(s) 242, 556
Bbv12I GWGCWC 3 cut(s) 508, 556, 631
BbvI GCAGC 5 cut(s) 310, 480, 508, 686, 750
BccI CCATC 1 cut(s) 311
BceAI ACGGC 8 cut(s) 4, 283, 420, 462, 529, 608, 971, 1116
BcgI CGANNNNNNTGC 8 cut(s) 944, 978, 1135, 1169, 1199, 1233, 1241, 1275
BciT130I CCWGG 1 cut(s) 213
BcnI CCSGG 5 cut(s) 199, 421, 800, 837, 838
BcoDI GTCTC 5 cut(s) 63, 106, 435, 485, 874
BfaI CTAG 8 cut(s) 87, 977, 1007, 1064, 1116, 1206, 1248, 1312
BfoI RGCGCY 1 cut(s) 225
BfuAI ACCTGC 1 cut(s) 904
BglI GCCNNNNNGGC 2 cut(s) 142, 483
Bme1390I CCNGG 6 cut(s) 199, 213, 421, 800, 837, 838
Bme18I GGWCC 6 cut(s) 195, 253, 365, 389, 610, 720
BmeT110I CYCGRG 7 cut(s) 185, 379, 683, 723, 758, 836, 856
BmgBI CACGTC 1 cut(s) 637
BmgT120I GGNCC 7 cut(s) 195, 253, 365, 389, 563, 610, 720
BmiI GGNNCC 5 cut(s) 223, 611, 674, 721, 722
BmrFI CCNGG 6 cut(s) 199, 213, 421, 800, 837, 838
BmrI ACTGGG 1 cut(s) 820
BmsI GCATC 3 cut(s) 319, 505, 952
BmtI GCTAGC 2 cut(s) 1209, 1251
BmuI ACTGGG 1 cut(s) 820
BplI GAGNNNNNCTC 2 cut(s) 89, 121
Bpu10I CCTNAGC 1 cut(s) 140
BpuMI CCSGG 5 cut(s) 199, 421, 800, 837, 838
BsaHI GRCGYC 3 cut(s) 222, 270, 444
BsaI GGTCTC 2 cut(s) 63, 106
BsaXI ACNNNNNCTCC 4 cut(s) 432, 462, 594, 624
Bse118I RCCGGY 1 cut(s) 362
Bse1I ACTGG 2 cut(s) 590, 815
Bse3DI GCAATG 8 cut(s) 988, 1029, 1085, 1127, 1163, 1203, 1227, 1269
BseBI CCWGG 1 cut(s) 213
BseGI GGATG 2 cut(s) 322, 349
BseMI GCAATG 8 cut(s) 988, 1029, 1085, 1127, 1163, 1203, 1227, 1269
BseNI ACTGG 2 cut(s) 590, 815
BseRI GAGGAG 1 cut(s) 94
BseSI GKGCMC 1 cut(s) 715
BseX3I CGGCCG 1 cut(s) 796
BseXI GCAGC 5 cut(s) 310, 480, 508, 686, 750
BseYI CCCAGC 1 cut(s) 708
Bsh1236I CGCG 7 cut(s) 110, 314, 455, 641, 772, 791, 929
Bsh1285I CGRYCG 4 cut(s) 308, 341, 799, 852
BshNI GGYRCC 1 cut(s) 221
BsiEI CGRYCG 4 cut(s) 308, 341, 799, 852
BsiHKAI GWGCWC 3 cut(s) 508, 556, 631
BsiHKCI CYCGRG 7 cut(s) 185, 379, 683, 723, 758, 836, 856
BsiSI CCGG 7 cut(s) 198, 251, 363, 420, 613, 799, 837
BslFI GGGAC 5 cut(s) 141, 193, 706, 713, 817
BsmAI GTCTC 5 cut(s) 63, 106, 435, 485, 874
BsmBI CGTCTC 2 cut(s) 435, 485
BsmFI GGGAC 5 cut(s) 141, 193, 706, 713, 817
BsmI GAATGC 2 cut(s) 300, 962
Bso31I GGTCTC 2 cut(s) 63, 106
BsoBI CYCGRG 7 cut(s) 185, 379, 683, 723, 758, 836, 856
Bsp1286I GDGCHC 5 cut(s) 242, 508, 556, 631, 715
Bsp143I GATC 3 cut(s) 305, 456, 672
Bsp19I CCATGG 1 cut(s) 1126
BspFNI CGCG 7 cut(s) 110, 314, 455, 641, 772, 791, 929
BspLI GGNNCC 5 cut(s) 223, 611, 674, 721, 722
BspMI ACCTGC 1 cut(s) 904
BspOI GCTAGC 2 cut(s) 1209, 1251
BspPI GGATC 2 cut(s) 667, 680
BspQI GCTCTTC 1 cut(s) 619
BspT107I GGYRCC 1 cut(s) 221
BspTNI GGTCTC 2 cut(s) 63, 106
BsrBI CCGCTC 1 cut(s) 781
BsrDI GCAATG 8 cut(s) 988, 1029, 1085, 1127, 1163, 1203, 1227, 1269
BsrFI RCCGGY 1 cut(s) 362
BsrI ACTGG 2 cut(s) 590, 815
BssAI RCCGGY 1 cut(s) 362
BssMI GATC 3 cut(s) 305, 456, 672
BssNI GRCGYC 3 cut(s) 222, 270, 444
BssT1I CCWWGG 9 cut(s) 146, 540, 971, 1032, 1054, 1089, 1110, 1126, 1280
Bst2UI CCWGG 1 cut(s) 213
Bst4CI ACNGT 5 cut(s) 169, 354, 393, 850, 913
Bst6I CTCTTC 1 cut(s) 619
BstACI GRCGYC 3 cut(s) 222, 270, 444
BstAPI GCANNNNNTGC 2 cut(s) 1180, 1202
BstDEI CTNAG 3 cut(s) 25, 121, 140
BstDSI CCRYGG 6 cut(s) 108, 265, 436, 770, 987, 1126
BstENI CCTNNNNNAGG 1 cut(s) 1010
BstF5I GGATG 2 cut(s) 322, 349
BstFNI CGCG 7 cut(s) 110, 314, 455, 641, 772, 791, 929
BstH2I RGCGCY 1 cut(s) 225
BstHHI GCGC 5 cut(s) 224, 314, 334, 477, 929
BstKTI GATC 3 cut(s) 308, 459, 675
BstMAI GTCTC 5 cut(s) 63, 106, 435, 485, 874
BstMBI GATC 3 cut(s) 305, 456, 672
BstMCI CGRYCG 4 cut(s) 308, 341, 799, 852
BstNI CCWGG 1 cut(s) 213
BstNSI RCATGY 1 cut(s) 475
BstSCI CCNGG 6 cut(s) 197, 211, 419, 798, 835, 836
BstSLI GKGCMC 1 cut(s) 715
BstUI CGCG 7 cut(s) 110, 314, 455, 641, 772, 791, 929
BstV1I GCAGC 5 cut(s) 310, 480, 508, 686, 750
BstX2I RGATCY 1 cut(s) 672
BstXI CCANNNNNNTGG 4 cut(s) 1169, 1191, 1233, 1297
BstYI RGATCY 1 cut(s) 672
BstZI CGGCCG 1 cut(s) 796
BtgI CCRYGG 6 cut(s) 108, 265, 436, 770, 987, 1126
BtgZI GCGATG 2 cut(s) 342, 975
BtrI CACGTC 1 cut(s) 637
BtsCI GGATG 2 cut(s) 322, 349
BtsIMutI CAGTG 1 cut(s) 583
BveI ACCTGC 1 cut(s) 904
CfoI GCGC 5 cut(s) 224, 314, 334, 477, 929
Cfr10I RCCGGY 1 cut(s) 362
Cfr13I GGNCC 7 cut(s) 195, 253, 365, 389, 563, 610, 720
Cfr42I CCGCGG 2 cut(s) 111, 773
Cfr9I CCCGGG 1 cut(s) 836
CpoI CGGWCCG 2 cut(s) 195, 365
CseI GACGC 4 cut(s) 169, 259, 461, 952
Csp6I GTAC 1 cut(s) 170
CspI CGGWCCG 2 cut(s) 195, 365
CviAII CATG 5 cut(s) 15, 460, 472, 1127, 1142
CviQI GTAC 1 cut(s) 170
DdeI CTNAG 3 cut(s) 25, 121, 140
DinI GGCGCC 1 cut(s) 223
DpnI GATC 3 cut(s) 307, 458, 674
DpnII GATC 3 cut(s) 305, 456, 672
EaeI YGGCCR 7 cut(s) 17, 111, 134, 411, 796, 1129, 1277
EagI CGGCCG 1 cut(s) 796
Eam1104I CTCTTC 1 cut(s) 619
EarI CTCTTC 1 cut(s) 619
EciI GGCGGA 3 cut(s) 208, 357, 615
Ecl136II GAGCTC 1 cut(s) 554
EclXI CGGCCG 1 cut(s) 796
Eco130I CCWWGG 9 cut(s) 146, 540, 971, 1032, 1054, 1089, 1110, 1126, 1280
Eco24I GRGCYC 2 cut(s) 242, 556
Eco31I GGTCTC 2 cut(s) 63, 106
Eco47I GGWCC 6 cut(s) 195, 253, 365, 389, 610, 720
Eco52I CGGCCG 1 cut(s) 796
Eco53kI GAGCTC 1 cut(s) 554
Eco88I CYCGRG 7 cut(s) 185, 379, 683, 723, 758, 836, 856
EcoICRI GAGCTC 1 cut(s) 554
EcoNI CCTNNNNNAGG 1 cut(s) 1010
EcoO109I RGGNCCY 1 cut(s) 720
EcoRII CCWGG 1 cut(s) 211
EcoT14I CCWWGG 9 cut(s) 146, 540, 971, 1032, 1054, 1089, 1110, 1126, 1280
EcoT38I GRGCYC 2 cut(s) 242, 556
EgeI GGCGCC 1 cut(s) 223
EheI GGCGCC 1 cut(s) 223
ErhI CCWWGG 9 cut(s) 146, 540, 971, 1032, 1054, 1089, 1110, 1126, 1280
Esp3I CGTCTC 2 cut(s) 435, 485
FaeI CATG 5 cut(s) 18, 463, 475, 1130, 1145
FaqI GGGAC 5 cut(s) 141, 193, 706, 713, 817
FatI CATG 5 cut(s) 14, 459, 471, 1126, 1141
FauI CCCGC 2 cut(s) 609, 774
FblI GTMKAC 2 cut(s) 450, 852
FokI GGATG 2 cut(s) 329, 356
FriOI GRGCYC 2 cut(s) 242, 556
FspBI CTAG 8 cut(s) 87, 977, 1007, 1064, 1116, 1206, 1248, 1312
GlaI GCGC 5 cut(s) 223, 313, 333, 476, 928
GsaI CCCAGC 1 cut(s) 712
HaeII RGCGCY 1 cut(s) 225
HapII CCGG 7 cut(s) 198, 251, 363, 420, 613, 799, 837
HgaI GACGC 4 cut(s) 169, 259, 461, 952
HhaI GCGC 5 cut(s) 224, 314, 334, 477, 929
Hin1I GRCGYC 3 cut(s) 222, 270, 444
Hin1II CATG 5 cut(s) 18, 463, 475, 1130, 1145
Hin6I GCGC 5 cut(s) 222, 312, 332, 475, 927
HinP1I GCGC 5 cut(s) 222, 312, 332, 475, 927
HincII GTYRAC 3 cut(s) 61, 451, 853
HindII GTYRAC 3 cut(s) 61, 451, 853
HinfI GANTC 6 cut(s) 278, 377, 545, 726, 854, 867
HpaI GTTAAC 1 cut(s) 61
HpaII CCGG 7 cut(s) 198, 251, 363, 420, 613, 799, 837
HphI GGTGA 3 cut(s) 245, 761, 1127
Hpy166II GTNNAC 5 cut(s) 61, 389, 451, 752, 853
Hpy188I TCNGA 2 cut(s) 343, 922
Hpy188III TCNNGA 6 cut(s) 187, 509, 549, 685, 723, 730
Hpy8I GTNNAC 5 cut(s) 61, 389, 451, 752, 853
Hpy99I CGWCG 7 cut(s) 275, 449, 452, 455, 641, 742, 942
HpyAV CCTTC 3 cut(s) 210, 832, 1006
HpyCH4III ACNGT 5 cut(s) 169, 354, 393, 850, 913
HpyCH4IV ACGT 2 cut(s) 444, 636
HpyCH4V TGCA 7 cut(s) 14, 298, 1022, 1078, 1156, 1220, 1262
HpyF3I CTNAG 3 cut(s) 25, 121, 140
HpySE526I ACGT 2 cut(s) 444, 636
Hsp92I GRCGYC 3 cut(s) 222, 270, 444
Hsp92II CATG 5 cut(s) 18, 463, 475, 1130, 1145
HspAI GCGC 5 cut(s) 222, 312, 332, 475, 927
KasI GGCGCC 1 cut(s) 221
KflI GGGWCCC 1 cut(s) 720
KspAI GTTAAC 1 cut(s) 61
KspI CCGCGG 2 cut(s) 111, 773
Kzo9I GATC 3 cut(s) 305, 456, 672
LguI GCTCTTC 1 cut(s) 619
LmnI GCTCC 3 cut(s) 35, 559, 824
Lsp1109I GCAGC 5 cut(s) 310, 480, 508, 686, 750
LweI GCATC 3 cut(s) 319, 505, 952
MaeI CTAG 8 cut(s) 87, 977, 1007, 1064, 1116, 1206, 1248, 1312
MaeII ACGT 2 cut(s) 444, 636
MaeIII GTNAC 4 cut(s) 354, 393, 677, 1133
MalI GATC 3 cut(s) 307, 458, 674
MbiI CCGCTC 1 cut(s) 781
MboI GATC 3 cut(s) 305, 456, 672
MboII GAAGA 1 cut(s) 636
MflI RGATCY 1 cut(s) 672
MhlI GDGCHC 5 cut(s) 242, 508, 556, 631, 715
MlsI TGGCCA 1 cut(s) 1279
MluCI AATT 1 cut(s) 52
MluNI TGGCCA 1 cut(s) 1279
Mly113I GGCGCC 1 cut(s) 222
MlyI GAGTC 5 cut(s) 287, 371, 735, 848, 876
MmeI TCCRAC 1 cut(s) 321
Mox20I TGGCCA 1 cut(s) 1279
MscI TGGCCA 1 cut(s) 1279
MseI TTAA 2 cut(s) 51, 60
MslI CAYNNNNRTG 2 cut(s) 501, 1140
Msp20I TGGCCA 1 cut(s) 1279
MspA1I CMGCKG 2 cut(s) 110, 772
MspI CCGG 7 cut(s) 198, 251, 363, 420, 613, 799, 837
MspR9I CCNGG 6 cut(s) 199, 213, 421, 800, 837, 838
Mva1269I GAATGC 2 cut(s) 300, 962
MvaI CCWGG 1 cut(s) 213
MvnI CGCG 7 cut(s) 110, 314, 455, 641, 772, 791, 929
NarI GGCGCC 1 cut(s) 222
NciI CCSGG 5 cut(s) 199, 421, 800, 837, 838
NcoI CCATGG 1 cut(s) 1126
NdeII GATC 3 cut(s) 305, 456, 672
NheI GCTAGC 2 cut(s) 1205, 1247
NlaIII CATG 5 cut(s) 18, 463, 475, 1130, 1145
NlaIV GGNNCC 5 cut(s) 223, 611, 674, 721, 722
NmeAIII GCCGAG 3 cut(s) 54, 462, 576
NmuCI GTSAC 2 cut(s) 354, 1133
NspI RCATGY 1 cut(s) 475
PaeI GCATGC 1 cut(s) 475
PaeR7I CTCGAG 2 cut(s) 185, 758
PciSI GCTCTTC 1 cut(s) 619
PcsI WCGNNNNNNNCGW 3 cut(s) 273, 499, 721
PctI GAATGC 2 cut(s) 300, 962
PfeI GAWTC 1 cut(s) 545
PflFI GACNNNGTC 1 cut(s) 446
Ple19I CGATCG 1 cut(s) 308
PleI GAGTC 5 cut(s) 286, 371, 734, 848, 875
PluTI GGCGCC 1 cut(s) 225
PpsI GAGTC 5 cut(s) 286, 371, 734, 848, 875
PpuMI RGGWCCY 1 cut(s) 720
Psp124BI GAGCTC 1 cut(s) 556
Psp5II RGGWCCY 1 cut(s) 720
Psp6I CCWGG 1 cut(s) 211
PspFI CCCAGC 1 cut(s) 708
PspGI CCWGG 1 cut(s) 211
PspN4I GGNNCC 5 cut(s) 223, 611, 674, 721, 722
PspPI GGNCC 7 cut(s) 195, 253, 365, 389, 563, 610, 720
PspPPI RGGWCCY 1 cut(s) 720
PspXI VCTCGAGB 1 cut(s) 758
PsuI RGATCY 1 cut(s) 672
PsyI GACNNNGTC 1 cut(s) 446
PvuI CGATCG 1 cut(s) 308
RsaI GTAC 1 cut(s) 171
RsaNI GTAC 1 cut(s) 170
RseI CAYNNNNRTG 2 cut(s) 501, 1140
Rsr2I CGGWCCG 2 cut(s) 195, 365
RsrII CGGWCCG 2 cut(s) 195, 365
SacI GAGCTC 1 cut(s) 556
SacII CCGCGG 2 cut(s) 111, 773
SalI GTCGAC 2 cut(s) 449, 851
SapI GCTCTTC 1 cut(s) 619
SaqAI TTAA 2 cut(s) 51, 60
Sau3AI GATC 3 cut(s) 305, 456, 672
Sau96I GGNCC 7 cut(s) 195, 253, 365, 389, 563, 610, 720
SchI GAGTC 5 cut(s) 287, 371, 735, 848, 876
ScrFI CCNGG 6 cut(s) 199, 213, 421, 800, 837, 838
SduI GDGCHC 5 cut(s) 242, 508, 556, 631, 715
SfaNI GCATC 3 cut(s) 319, 505, 952
SfiI GGCCNNNNNGGCC 1 cut(s) 142
SfoI GGCGCC 1 cut(s) 223
Sfr274I CTCGAG 2 cut(s) 185, 758
Sfr303I CCGCGG 2 cut(s) 111, 773
SgrBI CCGCGG 2 cut(s) 111, 773
SgrDI CGTCGACG 1 cut(s) 449
SinI GGWCC 6 cut(s) 195, 253, 365, 389, 610, 720
SlaI CTCGAG 2 cut(s) 185, 758
SmaI CCCGGG 1 cut(s) 838
SmiMI CAYNNNNRTG 2 cut(s) 501, 1140
SmlI CTYRAG 2 cut(s) 185, 758
SmoI CTYRAG 2 cut(s) 185, 758
SphI GCATGC 1 cut(s) 475
Sse9I AATT 1 cut(s) 52
SspDI GGCGCC 1 cut(s) 221
SspMI CTAG 8 cut(s) 87, 977, 1007, 1064, 1116, 1206, 1248, 1312
SstI GAGCTC 1 cut(s) 556
StyD4I CCNGG 6 cut(s) 197, 211, 419, 798, 835, 836
StyI CCWWGG 9 cut(s) 146, 540, 971, 1032, 1054, 1089, 1110, 1126, 1280
TaaI ACNGT 5 cut(s) 169, 354, 393, 850, 913
TaiI ACGT 2 cut(s) 447, 639
TaqI TCGA 7 cut(s) 186, 375, 450, 548, 759, 852, 892
TaqII GACCGA 1 cut(s) 327
TasI AATT 1 cut(s) 52
TfiI GAWTC 1 cut(s) 545
Tru1I TTAA 2 cut(s) 51, 60
Tru9I TTAA 2 cut(s) 51, 60
TscAI CASTG 1 cut(s) 590
TseFI GTSAC 2 cut(s) 354, 1133
TseI GCWGC 5 cut(s) 298, 468, 521, 699, 763
Tsp45I GTSAC 2 cut(s) 354, 1133
TspGWI ACGGA 6 cut(s) 46, 187, 412, 665, 821, 955
TspMI CCCGGG 1 cut(s) 836
TspRI CASTG 1 cut(s) 590
Tth111I GACNNNGTC 1 cut(s) 446
VpaK11BI GGWCC 6 cut(s) 195, 253, 365, 389, 610, 720
XagI CCTNNNNNAGG 1 cut(s) 1010
XceI RCATGY 1 cut(s) 475
XhoI CTCGAG 2 cut(s) 185, 758
XmaI CCCGGG 1 cut(s) 836
XmiI GTMKAC 2 cut(s) 450, 852
XspI CTAG 8 cut(s) 87, 977, 1007, 1064, 1116, 1206, 1248, 1312
ZraI GACGTC 1 cut(s) 445
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.