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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB7I | CCANNNNNTGG | 1 cut(s) | 260 |
| AccII | CGCG | 3 cut(s) | 18, 73, 281 |
| AccIII | TCCGGA | 1 cut(s) | 316 |
| AciI | CCGC | 8 cut(s) | 31, 73, 76, 109, 257, 272, 302, 358 |
| AfaI | GTAC | 1 cut(s) | 349 |
| AfiI | CCNNNNNNNGG | 6 cut(s) | 36, 37, 178, 230, 246, 260 |
| AgsI | TTSAA | 3 cut(s) | 153, 167, 311 |
| AjiI | CACGTC | 1 cut(s) | 277 |
| AjnI | CCWGG | 1 cut(s) | 48 |
| Alw21I | GWGCWC | 1 cut(s) | 271 |
| Alw26I | GTCTC | 1 cut(s) | 372 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 260 |
| Ama87I | CYCGRG | 2 cut(s) | 91, 104 |
| Aor13HI | TCCGGA | 1 cut(s) | 316 |
| AoxI | GGCC | 4 cut(s) | 51, 169, 212, 303 |
| ApeKI | GCWGC | 1 cut(s) | 82 |
| AspLEI | GCGC | 5 cut(s) | 11, 18, 73, 116, 297 |
| AspS9I | GGNCC | 4 cut(s) | 52, 251, 304, 322 |
| AsuC2I | CCSGG | 7 cut(s) | 92, 93, 105, 106, 225, 299, 342 |
| AvaI | CYCGRG | 2 cut(s) | 91, 104 |
| AvaII | GGWCC | 2 cut(s) | 251, 322 |
| BanII | GRGCYC | 1 cut(s) | 105 |
| Bbv12I | GWGCWC | 1 cut(s) | 271 |
| BbvI | GCAGC | 1 cut(s) | 69 |
| BceAI | ACGGC | 4 cut(s) | 18, 101, 214, 247 |
| BciT130I | CCWGG | 1 cut(s) | 50 |
| BcnI | CCSGG | 7 cut(s) | 92, 93, 105, 106, 225, 299, 342 |
| BcoDI | GTCTC | 1 cut(s) | 372 |
| BfoI | RGCGCY | 2 cut(s) | 12, 117 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 39 |
| BglII | AGATCT | 1 cut(s) | 127 |
| BisI | GCNGC | 4 cut(s) | 74, 83, 258, 303 |
| BlpI | GCTNAGC | 2 cut(s) | 12, 235 |
| BlsI | GCNGC | 4 cut(s) | 75, 84, 259, 304 |
| Bme1390I | CCNGG | 8 cut(s) | 50, 92, 93, 105, 106, 225, 299, 342 |
| Bme18I | GGWCC | 2 cut(s) | 251, 322 |
| BmeT110I | CYCGRG | 2 cut(s) | 91, 104 |
| BmgBI | CACGTC | 1 cut(s) | 277 |
| BmgT120I | GGNCC | 4 cut(s) | 52, 251, 304, 322 |
| BmiI | GGNNCC | 3 cut(s) | 54, 188, 252 |
| BmrFI | CCNGG | 8 cut(s) | 50, 92, 93, 105, 106, 225, 299, 342 |
| BmsI | GCATC | 1 cut(s) | 369 |
| Bpu1102I | GCTNAGC | 2 cut(s) | 12, 235 |
| BpuMI | CCSGG | 7 cut(s) | 92, 93, 105, 106, 225, 299, 342 |
| BsaI | GGTCTC | 1 cut(s) | 372 |
| BsaJI | CCNNGG | 5 cut(s) | 91, 92, 104, 223, 371 |
| BsaWI | WCCGGW | 2 cut(s) | 289, 316 |
| Bsc4I | CCNNNNNNNGG | 6 cut(s) | 36, 37, 178, 230, 246, 260 |
| BseAI | TCCGGA | 1 cut(s) | 316 |
| BseBI | CCWGG | 1 cut(s) | 50 |
| BseDI | CCNNGG | 5 cut(s) | 91, 92, 104, 223, 371 |
| BseGI | GGATG | 1 cut(s) | 10 |
| BseLI | CCNNNNNNNGG | 6 cut(s) | 36, 37, 178, 230, 246, 260 |
| BseMII | CTCAG | 1 cut(s) | 249 |
| BseXI | GCAGC | 1 cut(s) | 69 |
| BsgI | GTGCAG | 1 cut(s) | 144 |
| Bsh1236I | CGCG | 3 cut(s) | 18, 73, 281 |
| Bsh1285I | CGRYCG | 2 cut(s) | 80, 346 |
| BshFI | GGCC | 4 cut(s) | 53, 171, 214, 305 |
| BsiEI | CGRYCG | 2 cut(s) | 80, 346 |
| BsiHKAI | GWGCWC | 1 cut(s) | 271 |
| BsiHKCI | CYCGRG | 2 cut(s) | 91, 104 |
| BsiSI | CCGG | 8 cut(s) | 92, 105, 225, 240, 290, 299, 317, 342 |
| BslI | CCNNNNNNNGG | 6 cut(s) | 36, 37, 178, 230, 246, 260 |
| BsmAI | GTCTC | 1 cut(s) | 372 |
| BsnI | GGCC | 4 cut(s) | 53, 171, 214, 305 |
| Bso31I | GGTCTC | 1 cut(s) | 372 |
| BsoBI | CYCGRG | 2 cut(s) | 91, 104 |
| Bsp1286I | GDGCHC | 2 cut(s) | 105, 271 |
| Bsp13I | TCCGGA | 1 cut(s) | 316 |
| Bsp143I | GATC | 1 cut(s) | 127 |
| Bsp1720I | GCTNAGC | 2 cut(s) | 12, 235 |
| BspACI | CCGC | 8 cut(s) | 31, 73, 76, 109, 257, 272, 302, 358 |
| BspANI | GGCC | 4 cut(s) | 53, 171, 214, 305 |
| BspCNI | CTCAG | 1 cut(s) | 248 |
| BspEI | TCCGGA | 1 cut(s) | 316 |
| BspFNI | CGCG | 3 cut(s) | 18, 73, 281 |
| BspLI | GGNNCC | 3 cut(s) | 54, 188, 252 |
| BspQI | GCTCTTC | 1 cut(s) | 259 |
| BspTNI | GGTCTC | 1 cut(s) | 372 |
| BssECI | CCNNGG | 5 cut(s) | 91, 92, 104, 223, 371 |
| BssMI | GATC | 1 cut(s) | 127 |
| BssT1I | CCWWGG | 1 cut(s) | 371 |
| Bst2UI | CCWGG | 1 cut(s) | 50 |
| Bst6I | CTCTTC | 2 cut(s) | 169, 259 |
| BstC8I | GCNNGC | 1 cut(s) | 216 |
| BstDEI | CTNAG | 2 cut(s) | 12, 235 |
| BstF5I | GGATG | 1 cut(s) | 10 |
| BstFNI | CGCG | 3 cut(s) | 18, 73, 281 |
| BstH2I | RGCGCY | 2 cut(s) | 12, 117 |
| BstHHI | GCGC | 5 cut(s) | 11, 18, 73, 116, 297 |
| BstKTI | GATC | 1 cut(s) | 130 |
| BstMAI | GTCTC | 1 cut(s) | 372 |
| BstMBI | GATC | 1 cut(s) | 127 |
| BstMCI | CGRYCG | 2 cut(s) | 80, 346 |
| BstMWI | GCNNNNNNNGC | 7 cut(s) | 15, 39, 79, 82, 122, 266, 337 |
| BstNI | CCWGG | 1 cut(s) | 50 |
| BstSCI | CCNGG | 8 cut(s) | 48, 90, 91, 103, 104, 223, 297, 340 |
| BstUI | CGCG | 3 cut(s) | 18, 73, 281 |
| BstV1I | GCAGC | 1 cut(s) | 69 |
| BstX2I | RGATCY | 1 cut(s) | 127 |
| BstYI | RGATCY | 1 cut(s) | 127 |
| BsuRI | GGCC | 4 cut(s) | 53, 171, 214, 305 |
| BtrI | CACGTC | 1 cut(s) | 277 |
| BtsCI | GGATG | 1 cut(s) | 10 |
| Cac8I | GCNNGC | 1 cut(s) | 216 |
| CaiI | CAGNNNCTG | 1 cut(s) | 260 |
| CfoI | GCGC | 5 cut(s) | 11, 18, 73, 116, 297 |
| Cfr13I | GGNCC | 4 cut(s) | 52, 251, 304, 322 |
| Cfr9I | CCCGGG | 2 cut(s) | 91, 104 |
| Csp6I | GTAC | 1 cut(s) | 348 |
| CviAII | CATG | 2 cut(s) | 191, 210 |
| CviJI | RGCY | 8 cut(s) | 53, 103, 171, 214, 234, 239, 260, 305 |
| CviKI_1 | RGCY | 8 cut(s) | 53, 103, 171, 214, 234, 239, 260, 305 |
| CviQI | GTAC | 1 cut(s) | 348 |
| DdeI | CTNAG | 2 cut(s) | 12, 235 |
| DpnI | GATC | 1 cut(s) | 129 |
| DpnII | GATC | 1 cut(s) | 127 |
| Eam1104I | CTCTTC | 2 cut(s) | 169, 259 |
| EarI | CTCTTC | 2 cut(s) | 169, 259 |
| EciI | GGCGGA | 1 cut(s) | 124 |
| Eco130I | CCWWGG | 1 cut(s) | 371 |
| Eco24I | GRGCYC | 1 cut(s) | 105 |
| Eco31I | GGTCTC | 1 cut(s) | 372 |
| Eco47I | GGWCC | 2 cut(s) | 251, 322 |
| Eco88I | CYCGRG | 2 cut(s) | 91, 104 |
| EcoO109I | RGGNCCY | 1 cut(s) | 52 |
| EcoRII | CCWGG | 1 cut(s) | 48 |
| EcoT14I | CCWWGG | 1 cut(s) | 371 |
| EcoT38I | GRGCYC | 1 cut(s) | 105 |
| ErhI | CCWWGG | 1 cut(s) | 371 |
| FaeI | CATG | 2 cut(s) | 194, 213 |
| FaiI | YATR | 4 cut(s) | 27, 192, 211, 354 |
| FatI | CATG | 2 cut(s) | 190, 209 |
| FauI | CCCGC | 1 cut(s) | 38 |
| Fnu4HI | GCNGC | 4 cut(s) | 74, 83, 258, 303 |
| FokI | GGATG | 1 cut(s) | 17 |
| FriOI | GRGCYC | 1 cut(s) | 105 |
| Fsp4HI | GCNGC | 4 cut(s) | 74, 83, 258, 303 |
| GlaI | GCGC | 5 cut(s) | 10, 17, 72, 115, 296 |
| GluI | GCNGC | 4 cut(s) | 74, 83, 258, 303 |
| HaeII | RGCGCY | 2 cut(s) | 12, 117 |
| HaeIII | GGCC | 4 cut(s) | 53, 171, 214, 305 |
| HapII | CCGG | 8 cut(s) | 92, 105, 225, 240, 290, 299, 317, 342 |
| HhaI | GCGC | 5 cut(s) | 11, 18, 73, 116, 297 |
| Hin1II | CATG | 2 cut(s) | 194, 213 |
| Hin6I | GCGC | 5 cut(s) | 9, 16, 71, 114, 295 |
| HinP1I | GCGC | 5 cut(s) | 9, 16, 71, 114, 295 |
| HpaII | CCGG | 8 cut(s) | 92, 105, 225, 240, 290, 299, 317, 342 |
| Hpy166II | GTNNAC | 1 cut(s) | 196 |
| Hpy188III | TCNNGA | 1 cut(s) | 317 |
| Hpy8I | GTNNAC | 1 cut(s) | 196 |
| Hpy99I | CGWCG | 3 cut(s) | 39, 122, 281 |
| HpyAV | CCTTC | 1 cut(s) | 161 |
| HpyCH4IV | ACGT | 1 cut(s) | 276 |
| HpyCH4V | TGCA | 3 cut(s) | 85, 125, 207 |
| HpyF10VI | GCNNNNNNNGC | 7 cut(s) | 15, 39, 79, 82, 122, 266, 337 |
| HpyF3I | CTNAG | 2 cut(s) | 12, 235 |
| HpySE526I | ACGT | 1 cut(s) | 276 |
| Hsp92II | CATG | 2 cut(s) | 194, 213 |
| HspAI | GCGC | 5 cut(s) | 9, 16, 71, 114, 295 |
| Kpn2I | TCCGGA | 1 cut(s) | 316 |
| Kzo9I | GATC | 1 cut(s) | 127 |
| LguI | GCTCTTC | 1 cut(s) | 259 |
| LmnI | GCTCC | 1 cut(s) | 111 |
| Lsp1109I | GCAGC | 1 cut(s) | 69 |
| LweI | GCATC | 1 cut(s) | 369 |
| MaeII | ACGT | 1 cut(s) | 276 |
| MaeIII | GTNAC | 1 cut(s) | 19 |
| MalI | GATC | 1 cut(s) | 129 |
| MboI | GATC | 1 cut(s) | 127 |
| MboII | GAAGA | 2 cut(s) | 186, 276 |
| MflI | RGATCY | 1 cut(s) | 127 |
| MhlI | GDGCHC | 2 cut(s) | 105, 271 |
| MnlI | CCTC | 4 cut(s) | 60, 170, 236, 313 |
| MroI | TCCGGA | 1 cut(s) | 316 |
| MspA1I | CMGCKG | 1 cut(s) | 257 |
| MspI | CCGG | 8 cut(s) | 92, 105, 225, 240, 290, 299, 317, 342 |
| MspR9I | CCNGG | 8 cut(s) | 50, 92, 93, 105, 106, 225, 299, 342 |
| MvaI | CCWGG | 1 cut(s) | 50 |
| MvnI | CGCG | 3 cut(s) | 18, 73, 281 |
| MwoI | GCNNNNNNNGC | 7 cut(s) | 15, 39, 79, 82, 122, 266, 337 |
| NciI | CCSGG | 7 cut(s) | 92, 93, 105, 106, 225, 299, 342 |
| NdeII | GATC | 1 cut(s) | 127 |
| NlaIII | CATG | 2 cut(s) | 194, 213 |
| NlaIV | GGNNCC | 3 cut(s) | 54, 188, 252 |
| NmuCI | GTSAC | 1 cut(s) | 19 |
| PciSI | GCTCTTC | 1 cut(s) | 259 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 260 |
| PkrI | GCNGC | 4 cut(s) | 75, 84, 259, 304 |
| Psp6I | CCWGG | 1 cut(s) | 48 |
| PspGI | CCWGG | 1 cut(s) | 48 |
| PspN4I | GGNNCC | 3 cut(s) | 54, 188, 252 |
| PspPI | GGNCC | 4 cut(s) | 52, 251, 304, 322 |
| PstNI | CAGNNNCTG | 1 cut(s) | 260 |
| PsuI | RGATCY | 1 cut(s) | 127 |
| RsaI | GTAC | 1 cut(s) | 349 |
| RsaNI | GTAC | 1 cut(s) | 348 |
| SapI | GCTCTTC | 1 cut(s) | 259 |
| SatI | GCNGC | 4 cut(s) | 74, 83, 258, 303 |
| Sau3AI | GATC | 1 cut(s) | 127 |
| Sau96I | GGNCC | 4 cut(s) | 52, 251, 304, 322 |
| ScrFI | CCNGG | 8 cut(s) | 50, 92, 93, 105, 106, 225, 299, 342 |
| SduI | GDGCHC | 2 cut(s) | 105, 271 |
| SetI | ASST | 6 cut(s) | 26, 188, 247, 279, 368, 377 |
| SfaNI | GCATC | 1 cut(s) | 369 |
| SinI | GGWCC | 2 cut(s) | 251, 322 |
| SmaI | CCCGGG | 2 cut(s) | 93, 106 |
| SrfI | GCCCGGGC | 1 cut(s) | 106 |
| SsiI | CCGC | 8 cut(s) | 31, 73, 76, 109, 257, 272, 302, 358 |
| SspI | AATATT | 1 cut(s) | 149 |
| StyD4I | CCNGG | 8 cut(s) | 48, 90, 91, 103, 104, 223, 297, 340 |
| StyI | CCWWGG | 1 cut(s) | 371 |
| TaiI | ACGT | 1 cut(s) | 279 |
| TaqII | GACCGA | 1 cut(s) | 339 |
| TauI | GCSGC | 3 cut(s) | 76, 260, 305 |
| TseFI | GTSAC | 1 cut(s) | 19 |
| TseI | GCWGC | 1 cut(s) | 82 |
| Tsp45I | GTSAC | 1 cut(s) | 19 |
| TspMI | CCCGGG | 2 cut(s) | 91, 104 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 260 |
| VpaK11BI | GGWCC | 2 cut(s) | 251, 322 |
| XmaI | CCCGGG | 2 cut(s) | 91, 104 |