Rroxscaffold_44G00440640

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000044
OG0000104
Physical Location & Seq
Forward (+)
113262 .. 114061
800 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_44G00440640.1

Sequence Viewer

Length: 555 bp
ATGAGTAGGAGGGCGCGGCGGTCGCTGCAAAACAGGGGCGTGAGCCGGCGGAGCGGCCGTCGGTGCAGGATCTTGGTGCCTGCCCACCACTGGAAACGGCTCGGCGGAGGTAGGGTCCGGCGGGCTGGAAGAGCACCGCACGTCGCGTGGTGTCGGTGCGCCCCGGCGGCCCTTGAAAAAAATCCGGGAGGACCGAGTGCCATTCACGCCGGTCGTACTCATAACCGCATCGGGTCTCCCAAGGTGAACGACCTGCGGTCAATGGAACAATGTAGGCAAGGAAGTCGGCAAAATGGATCCGTAACCTCGGGAAAAGGATTGGCTGCGAGGGCTGGGCACGGGGGTCCCGGTCCGAACCCGTCGGCTGTCGGTGAACTGCTCGAGCTGCTTCCGCGGCGAGAGCGGGTCGCCCGCGTGCCGGCCGGGGGACGGACTGGGAACGCTCCTTCGGGGGCTTTCCCGGGCGTTCAACGGTCGACTCGGAACTGGTACGGACAAGGGGAATCCGACTGTTTAATTAAAACAAAGCATTGCGATGGTCCCTGCGGATGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

184

Amino Acids

19.68

Weight (kDa)

11.73

Isoelectric Point (pI)

67.6

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000104)

Species Orthologous Gene IDs
pyrus_communis pycom2246g00050 pycom2246g00060 pycom2246g00070 pycom2246g00100 pycom2246g00170 pycom2575g00020 pycom520g01350
rosa_roxburghii Rroxscaffold_102G00450880 Rroxscaffold_102G00450940 Rroxscaffold_103G00450570 Rroxscaffold_104G00444660 Rroxscaffold_104G00444710 Rroxscaffold_104G00444740 Rroxscaffold_104G00444800 Rroxscaffold_104G00444860 Rroxscaffold_105G00447090 Rroxscaffold_105G00447190 Rroxscaffold_105G00447230 Rroxscaffold_106G00451430 Rroxscaffold_107G00442440 Rroxscaffold_107G00442550 Rroxscaffold_107G00442640 Rroxscaffold_107G00442690 Rroxscaffold_111G00451560 Rroxscaffold_112G00451580 Rroxscaffold_113G00451620 Rroxscaffold_115G00451690 Rroxscaffold_118G00451780 Rroxscaffold_122G00451870 Rroxscaffold_123G00451910 Rroxscaffold_124G00451960 Rroxscaffold_128G00452050 Rroxscaffold_12G00450640 Rroxscaffold_131G00452100 Rroxscaffold_132G00452130 Rroxscaffold_138G00452190 Rroxscaffold_13G00448670 Rroxscaffold_14G00441890 Rroxscaffold_14G00441960 Rroxscaffold_14G00442010 Rroxscaffold_14G00442070 Rroxscaffold_15G00447460 Rroxscaffold_15G00447510 Rroxscaffold_15G00447580 Rroxscaffold_162G00450750 Rroxscaffold_17G00435460 Rroxscaffold_17G00435510 Rroxscaffold_17G00435570 Rroxscaffold_17G00435640 Rroxscaffold_17G00435910 Rroxscaffold_18G00446090 Rroxscaffold_18G00446110 Rroxscaffold_18G00446170 Rroxscaffold_19G00448930 Rroxscaffold_1G00000010 Rroxscaffold_1G00000090 Rroxscaffold_1G00000130 Rroxscaffold_20G00445030 Rroxscaffold_20G00445040 Rroxscaffold_20G00445070 Rroxscaffold_20G00445110 Rroxscaffold_21G00439440 Rroxscaffold_21G00439460 Rroxscaffold_21G00439470 Rroxscaffold_21G00439520 Rroxscaffold_21G00439570 Rroxscaffold_21G00439660 Rroxscaffold_22G00439850 Rroxscaffold_22G00439990 Rroxscaffold_22G00440030 Rroxscaffold_25G00450140 Rroxscaffold_25G00450170 Rroxscaffold_26G00447770 Rroxscaffold_27G00446650 Rroxscaffold_29G00441730 Rroxscaffold_29G00441740 Rroxscaffold_29G00441760 Rroxscaffold_29G00441780 Rroxscaffold_29G00441830 Rroxscaffold_29G00441870 Rroxscaffold_30G00449490 Rroxscaffold_30G00449510 Rroxscaffold_31G00438130 Rroxscaffold_31G00438170 Rroxscaffold_31G00438270 Rroxscaffold_32G00442790 Rroxscaffold_32G00442800 Rroxscaffold_32G00442840 Rroxscaffold_33G00439700 Rroxscaffold_33G00439710 Rroxscaffold_34G00443170 Rroxscaffold_34G00443210 Rroxscaffold_34G00443280 Rroxscaffold_34G00443310 Rroxscaffold_35G00441010 Rroxscaffold_35G00441120 Rroxscaffold_35G00441180 Rroxscaffold_35G00441260 Rroxscaffold_35G00441290 Rroxscaffold_36G00440070 Rroxscaffold_36G00440110 Rroxscaffold_36G00440140 Rroxscaffold_36G00440190 Rroxscaffold_37G00445180 Rroxscaffold_37G00445190 Rroxscaffold_37G00445230 Rroxscaffold_37G00445240 Rroxscaffold_37G00445270 Rroxscaffold_38G00444450 Rroxscaffold_38G00444530 Rroxscaffold_38G00444570 Rroxscaffold_38G00444600 Rroxscaffold_38G00444620 Rroxscaffold_39G00448260 Rroxscaffold_40G00447720 Rroxscaffold_43G00449810 Rroxscaffold_43G00449840 Rroxscaffold_43G00449900 Rroxscaffold_44G00440460 Rroxscaffold_44G00440470 Rroxscaffold_44G00440510 Rroxscaffold_44G00440600 Rroxscaffold_44G00440640 Rroxscaffold_45G00438810 Rroxscaffold_45G00438840 Rroxscaffold_45G00438870 Rroxscaffold_45G00438890 Rroxscaffold_45G00438980 Rroxscaffold_46G00448720 Rroxscaffold_46G00448740 Rroxscaffold_47G00443950 Rroxscaffold_47G00443980 Rroxscaffold_47G00444000 Rroxscaffold_47G00444090 Rroxscaffold_48G00448430 Rroxscaffold_48G00448470 Rroxscaffold_48G00448510 Rroxscaffold_49G00438600 Rroxscaffold_49G00438620 Rroxscaffold_49G00438680 Rroxscaffold_49G00438710 Rroxscaffold_49G00438740 Rroxscaffold_49G00438780 Rroxscaffold_50G00444160 Rroxscaffold_50G00444260 Rroxscaffold_50G00444290 Rroxscaffold_50G00444370 Rroxscaffold_50G00444400 Rroxscaffold_53G00449700 Rroxscaffold_53G00449730 Rroxscaffold_53G00449740 Rroxscaffold_54G00443410 Rroxscaffold_54G00443460 Rroxscaffold_54G00443490 Rroxscaffold_54G00443530 Rroxscaffold_54G00443580 Rroxscaffold_54G00443610 Rroxscaffold_54G00443670 Rroxscaffold_55G00450070 Rroxscaffold_55G00450130 Rroxscaffold_56G00450950 Rroxscaffold_58G00449000 Rroxscaffold_58G00449050 Rroxscaffold_59G00442150 Rroxscaffold_59G00442180 Rroxscaffold_59G00442250 Rroxscaffold_59G00442270 Rroxscaffold_59G00442280 Rroxscaffold_60G00448270 Rroxscaffold_60G00448290 Rroxscaffold_60G00448330 Rroxscaffold_60G00448400 Rroxscaffold_61G00449970 Rroxscaffold_62G00437930 Rroxscaffold_62G00438030 Rroxscaffold_64G00450690 Rroxscaffold_64G00450700 Rroxscaffold_65G00445280 Rroxscaffold_65G00445350 Rroxscaffold_65G00445390 Rroxscaffold_66G00437570 Rroxscaffold_66G00437600 Rroxscaffold_66G00437620 Rroxscaffold_66G00437690 Rroxscaffold_66G00437730 Rroxscaffold_66G00437770 Rroxscaffold_66G00437860 Rroxscaffold_68G00447000 Rroxscaffold_68G00447040 Rroxscaffold_69G00446680 Rroxscaffold_69G00446780 Rroxscaffold_69G00446790 Rroxscaffold_69G00446810 Rroxscaffold_6G00387760 Rroxscaffold_6G00387790 Rroxscaffold_6G00387830 Rroxscaffold_6G00387840 Rroxscaffold_70G00446290 Rroxscaffold_70G00446390 Rroxscaffold_71G00445730 Rroxscaffold_71G00445750 Rroxscaffold_72G00449340 Rroxscaffold_72G00449380 Rroxscaffold_73G00439090 Rroxscaffold_73G00439120 Rroxscaffold_73G00439190 Rroxscaffold_73G00439210 Rroxscaffold_73G00439250 Rroxscaffold_74G00442890 Rroxscaffold_74G00442960 Rroxscaffold_75G00447280 Rroxscaffold_75G00447300 Rroxscaffold_75G00447340 Rroxscaffold_75G00447390 Rroxscaffold_75G00447410 Rroxscaffold_75G00447440 Rroxscaffold_76G00448590 Rroxscaffold_78G00449630 Rroxscaffold_78G00449640 Rroxscaffold_79G00450250 Rroxscaffold_80G00450280 Rroxscaffold_80G00450300 Rroxscaffold_80G00450310 Rroxscaffold_81G00450490 Rroxscaffold_82G00450810 Rroxscaffold_86G00451260 Rroxscaffold_87G00451290 Rroxscaffold_87G00451300 Rroxscaffold_87G00451320 Rroxscaffold_88G00451390 Rroxscaffold_90G00448810 Rroxscaffold_91G00442980 Rroxscaffold_91G00443040 Rroxscaffold_92G00446460 Rroxscaffold_92G00446490 Rroxscaffold_92G00446500 Rroxscaffold_92G00446520 Rroxscaffold_92G00446540 Rroxscaffold_92G00446560 Rroxscaffold_93G00440970 Rroxscaffold_93G00440990 Rroxscaffold_94G00445800 Rroxscaffold_94G00445870 Rroxscaffold_94G00445950 Rroxscaffold_94G00445990 Rroxscaffold_95G00449230 Rroxscaffold_95G00449260 Rroxscaffold_95G00449270 Rroxscaffold_96G00449080 Rroxscaffold_97G00442330 Rroxscaffold_97G00442350 Rroxscaffold_97G00442360 Rroxscaffold_98G00451340 Rroxscaffold_99G00451190 Rroxscaffold_99G00451210

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 261
AccB1I GGYRCC 1 cut(s) 76
AccBSI CCGCTC 2 cut(s) 54, 403
AccI GTMKAC 1 cut(s) 476
AccII CGCG 4 cut(s) 16, 146, 394, 414
AclWI GGATC 3 cut(s) 77, 291, 304
AcoI YGGCCR 2 cut(s) 55, 420
AfaI GTAC 2 cut(s) 217, 491
AfiI CCNNNNNNNGG 4 cut(s) 90, 418, 425, 429
AgsI TTSAA 2 cut(s) 176, 470
AhdI GACNNNNNGTC 1 cut(s) 256
AjiI CACGTC 1 cut(s) 142
AluBI AGCT 1 cut(s) 385
AluI AGCT 1 cut(s) 385
Alw21I GWGCWC 1 cut(s) 136
Alw26I GTCTC 1 cut(s) 240
AlwI GGATC 3 cut(s) 77, 291, 304
Ama87I CYCGRG 3 cut(s) 307, 380, 460
AoxI GGCC 3 cut(s) 55, 168, 420
ApeKI GCWGC 3 cut(s) 25, 323, 385
AspLEI GCGC 2 cut(s) 16, 161
AspS9I GGNCC 6 cut(s) 115, 169, 191, 344, 350, 539
AsuC2I CCSGG 6 cut(s) 164, 186, 348, 424, 461, 462
AsuHPI GGTGA 2 cut(s) 256, 383
AvaI CYCGRG 3 cut(s) 307, 380, 460
AvaII GGWCC 5 cut(s) 115, 191, 344, 350, 539
BaeGI GKGCMC 1 cut(s) 339
BamHI GGATCC 1 cut(s) 296
BanI GGYRCC 1 cut(s) 76
Bbv12I GWGCWC 1 cut(s) 136
BbvI GCAGC 3 cut(s) 12, 310, 372
BccI CCATC 1 cut(s) 530
BceAI ACGGC 2 cut(s) 42, 113
BcgI CGANNNNNNTGC 2 cut(s) 266, 300
BcnI CCSGG 6 cut(s) 164, 186, 348, 424, 461, 462
BcoDI GTCTC 1 cut(s) 240
BfuAI ACCTGC 1 cut(s) 261
BglI GCCNNNNNGGC 1 cut(s) 167
BisI GCNGC 7 cut(s) 17, 26, 55, 168, 324, 386, 395
BlsI GCNGC 7 cut(s) 18, 27, 56, 169, 325, 387, 396
Bme1390I CCNGG 6 cut(s) 164, 186, 348, 424, 461, 462
Bme18I GGWCC 5 cut(s) 115, 191, 344, 350, 539
BmeRI GACNNNNNGTC 1 cut(s) 256
BmeT110I CYCGRG 3 cut(s) 307, 380, 460
BmgBI CACGTC 1 cut(s) 142
BmgT120I GGNCC 6 cut(s) 115, 169, 191, 344, 350, 539
BmiI GGNNCC 6 cut(s) 78, 116, 298, 345, 346, 541
BmrFI CCNGG 6 cut(s) 164, 186, 348, 424, 461, 462
BmrI ACTGGG 1 cut(s) 444
BmsI GCATC 1 cut(s) 237
BmuI ACTGGG 1 cut(s) 444
BpuMI CCSGG 6 cut(s) 164, 186, 348, 424, 461, 462
BsaI GGTCTC 1 cut(s) 240
BsaJI CCNNGG 6 cut(s) 162, 240, 306, 392, 423, 460
BsaXI ACNNNNNCTCC 4 cut(s) 43, 73, 99, 129
Bsc4I CCNNNNNNNGG 4 cut(s) 90, 418, 425, 429
Bse118I RCCGGY 3 cut(s) 45, 209, 418
Bse1I ACTGG 3 cut(s) 95, 439, 491
Bse3DI GCAATG 1 cut(s) 529
BseDI CCNNGG 6 cut(s) 162, 240, 306, 392, 423, 460
BseGI GGATG 1 cut(s) 554
BseLI CCNNNNNNNGG 4 cut(s) 90, 418, 425, 429
BseMI GCAATG 1 cut(s) 529
BseNI ACTGG 3 cut(s) 95, 439, 491
BseSI GKGCMC 1 cut(s) 339
BseX3I CGGCCG 2 cut(s) 55, 420
BseXI GCAGC 3 cut(s) 12, 310, 372
BseYI CCCAGC 1 cut(s) 332
BsgI GTGCAG 1 cut(s) 85
Bsh1236I CGCG 4 cut(s) 16, 146, 394, 414
Bsh1285I CGRYCG 5 cut(s) 23, 58, 214, 423, 476
BshFI GGCC 3 cut(s) 57, 170, 422
BshNI GGYRCC 1 cut(s) 76
BsiEI CGRYCG 5 cut(s) 23, 58, 214, 423, 476
BsiHKAI GWGCWC 1 cut(s) 136
BsiHKCI CYCGRG 3 cut(s) 307, 380, 460
BsiSI CCGG 9 cut(s) 46, 118, 164, 185, 210, 348, 419, 423, 461
BslFI GGGAC 3 cut(s) 330, 441, 525
BslI CCNNNNNNNGG 4 cut(s) 90, 418, 425, 429
BsmAI GTCTC 1 cut(s) 240
BsmFI GGGAC 3 cut(s) 330, 441, 525
BsnI GGCC 3 cut(s) 57, 170, 422
Bso31I GGTCTC 1 cut(s) 240
BsoBI CYCGRG 3 cut(s) 307, 380, 460
Bsp1286I GDGCHC 2 cut(s) 136, 339
Bsp143I GATC 2 cut(s) 69, 296
BspANI GGCC 3 cut(s) 57, 170, 422
BspFNI CGCG 4 cut(s) 16, 146, 394, 414
BspLI GGNNCC 6 cut(s) 78, 116, 298, 345, 346, 541
BspMI ACCTGC 1 cut(s) 261
BspPI GGATC 3 cut(s) 77, 291, 304
BspQI GCTCTTC 1 cut(s) 124
BspT107I GGYRCC 1 cut(s) 76
BspTNI GGTCTC 1 cut(s) 240
BsrBI CCGCTC 2 cut(s) 54, 403
BsrDI GCAATG 1 cut(s) 529
BsrFI RCCGGY 3 cut(s) 45, 209, 418
BsrI ACTGG 3 cut(s) 95, 439, 491
BssAI RCCGGY 3 cut(s) 45, 209, 418
BssECI CCNNGG 6 cut(s) 162, 240, 306, 392, 423, 460
BssMI GATC 2 cut(s) 69, 296
BssT1I CCWWGG 1 cut(s) 240
Bst4CI ACNGT 2 cut(s) 474, 512
Bst6I CTCTTC 1 cut(s) 124
BstC8I GCNNGC 6 cut(s) 47, 81, 123, 412, 416, 420
BstDSI CCRYGG 1 cut(s) 392
BstF5I GGATG 1 cut(s) 554
BstFNI CGCG 4 cut(s) 16, 146, 394, 414
BstHHI GCGC 2 cut(s) 16, 161
BstKTI GATC 2 cut(s) 72, 299
BstMAI GTCTC 1 cut(s) 240
BstMBI GATC 2 cut(s) 69, 296
BstMCI CGRYCG 5 cut(s) 23, 58, 214, 423, 476
BstSCI CCNGG 6 cut(s) 162, 184, 346, 422, 459, 460
BstSLI GKGCMC 1 cut(s) 339
BstUI CGCG 4 cut(s) 16, 146, 394, 414
BstV1I GCAGC 3 cut(s) 12, 310, 372
BstX2I RGATCY 2 cut(s) 69, 296
BstYI RGATCY 2 cut(s) 69, 296
BstZI CGGCCG 2 cut(s) 55, 420
BsuRI GGCC 3 cut(s) 57, 170, 422
BtgI CCRYGG 1 cut(s) 392
BtgZI GCGATG 1 cut(s) 549
BtrI CACGTC 1 cut(s) 142
BtsCI GGATG 1 cut(s) 554
BtsIMutI CAGTG 1 cut(s) 88
BveI ACCTGC 1 cut(s) 261
Cac8I GCNNGC 6 cut(s) 47, 81, 123, 412, 416, 420
CfoI GCGC 2 cut(s) 16, 161
Cfr10I RCCGGY 3 cut(s) 45, 209, 418
Cfr13I GGNCC 6 cut(s) 115, 169, 191, 344, 350, 539
Cfr42I CCGCGG 1 cut(s) 395
Cfr9I CCCGGG 1 cut(s) 460
CpoI CGGWCCG 1 cut(s) 350
Csp6I GTAC 2 cut(s) 216, 490
CspI CGGWCCG 1 cut(s) 350
CviQI GTAC 2 cut(s) 216, 490
DpnI GATC 2 cut(s) 71, 298
DpnII GATC 2 cut(s) 69, 296
DriI GACNNNNNGTC 1 cut(s) 256
EaeI YGGCCR 2 cut(s) 55, 420
EagI CGGCCG 2 cut(s) 55, 420
Eam1104I CTCTTC 1 cut(s) 124
Eam1105I GACNNNNNGTC 1 cut(s) 256
EarI CTCTTC 1 cut(s) 124
EciI GGCGGA 2 cut(s) 64, 120
EclXI CGGCCG 2 cut(s) 55, 420
Eco130I CCWWGG 1 cut(s) 240
Eco31I GGTCTC 1 cut(s) 240
Eco47I GGWCC 5 cut(s) 115, 191, 344, 350, 539
Eco52I CGGCCG 2 cut(s) 55, 420
Eco88I CYCGRG 3 cut(s) 307, 380, 460
EcoO109I RGGNCCY 1 cut(s) 344
EcoT14I CCWWGG 1 cut(s) 240
ErhI CCWWGG 1 cut(s) 240
FaiI YATR 1 cut(s) 222
FaqI GGGAC 3 cut(s) 330, 441, 525
FauI CCCGC 3 cut(s) 114, 396, 419
FblI GTMKAC 1 cut(s) 476
Fnu4HI GCNGC 7 cut(s) 17, 26, 55, 168, 324, 386, 395
Fsp4HI GCNGC 7 cut(s) 17, 26, 55, 168, 324, 386, 395
GlaI GCGC 2 cut(s) 15, 160
GluI GCNGC 7 cut(s) 17, 26, 55, 168, 324, 386, 395
GsaI CCCAGC 1 cut(s) 336
HaeIII GGCC 3 cut(s) 57, 170, 422
HapII CCGG 9 cut(s) 46, 118, 164, 185, 210, 348, 419, 423, 461
HhaI GCGC 2 cut(s) 16, 161
Hin6I GCGC 2 cut(s) 14, 159
HinP1I GCGC 2 cut(s) 14, 159
HincII GTYRAC 1 cut(s) 477
HindII GTYRAC 1 cut(s) 477
HinfI GANTC 2 cut(s) 478, 503
HpaII CCGG 9 cut(s) 46, 118, 164, 185, 210, 348, 419, 423, 461
HphI GGTGA 2 cut(s) 256, 383
Hpy166II GTNNAC 3 cut(s) 247, 374, 477
Hpy188I TCNGA 3 cut(s) 354, 483, 508
Hpy188III TCNNGA 1 cut(s) 309
Hpy8I GTNNAC 3 cut(s) 247, 374, 477
Hpy99I CGWCG 3 cut(s) 63, 146, 364
HpyAV CCTTC 1 cut(s) 456
HpyCH4III ACNGT 2 cut(s) 474, 512
HpyCH4IV ACGT 1 cut(s) 141
HpyCH4V TGCA 2 cut(s) 28, 66
HpySE526I ACGT 1 cut(s) 141
HspAI GCGC 2 cut(s) 14, 159
KflI GGGWCCC 1 cut(s) 344
KroI GCCGGC 2 cut(s) 45, 418
KroNI GCCGGC 2 cut(s) 47, 420
KspI CCGCGG 1 cut(s) 395
Kzo9I GATC 2 cut(s) 69, 296
LguI GCTCTTC 1 cut(s) 124
LmnI GCTCC 2 cut(s) 51, 448
Lsp1109I GCAGC 3 cut(s) 12, 310, 372
LweI GCATC 1 cut(s) 237
MaeII ACGT 1 cut(s) 141
MaeIII GTNAC 1 cut(s) 301
MalI GATC 2 cut(s) 71, 298
MbiI CCGCTC 2 cut(s) 54, 403
MboI GATC 2 cut(s) 69, 296
MboII GAAGA 1 cut(s) 141
MflI RGATCY 2 cut(s) 69, 296
MhlI GDGCHC 2 cut(s) 136, 339
MluCI AATT 1 cut(s) 516
MlyI GAGTC 1 cut(s) 472
MmeI TCCRAC 1 cut(s) 531
MnlI CCTC 5 cut(s) 3, 101, 182, 316, 321
MroNI GCCGGC 2 cut(s) 45, 418
MseI TTAA 3 cut(s) 515, 519, 553
MslI CAYNNNNRTG 1 cut(s) 534
MspA1I CMGCKG 1 cut(s) 394
MspI CCGG 9 cut(s) 46, 118, 164, 185, 210, 348, 419, 423, 461
MspR9I CCNGG 6 cut(s) 164, 186, 348, 424, 461, 462
MvnI CGCG 4 cut(s) 16, 146, 394, 414
NaeI GCCGGC 2 cut(s) 47, 420
NciI CCSGG 6 cut(s) 164, 186, 348, 424, 461, 462
NdeII GATC 2 cut(s) 69, 296
NgoMIV GCCGGC 2 cut(s) 45, 418
NlaIV GGNNCC 6 cut(s) 78, 116, 298, 345, 346, 541
NmeAIII GCCGAG 1 cut(s) 81
PacI TTAATTAA 1 cut(s) 519
PaeR7I CTCGAG 1 cut(s) 380
PciSI GCTCTTC 1 cut(s) 124
PdiI GCCGGC 2 cut(s) 47, 420
PfeI GAWTC 1 cut(s) 503
PfoI TCCNGGA 1 cut(s) 184
PkrI GCNGC 7 cut(s) 18, 27, 56, 169, 325, 387, 396
PleI GAGTC 1 cut(s) 472
PpsI GAGTC 1 cut(s) 472
PpuMI RGGWCCY 1 cut(s) 344
Psp5II RGGWCCY 1 cut(s) 344
PspFI CCCAGC 1 cut(s) 332
PspN4I GGNNCC 6 cut(s) 78, 116, 298, 345, 346, 541
PspPI GGNCC 6 cut(s) 115, 169, 191, 344, 350, 539
PspPPI RGGWCCY 1 cut(s) 344
PspXI VCTCGAGB 1 cut(s) 380
PsuI RGATCY 2 cut(s) 69, 296
RsaI GTAC 2 cut(s) 217, 491
RsaNI GTAC 2 cut(s) 216, 490
RseI CAYNNNNRTG 1 cut(s) 534
Rsr2I CGGWCCG 1 cut(s) 350
RsrII CGGWCCG 1 cut(s) 350
SacII CCGCGG 1 cut(s) 395
SalI GTCGAC 1 cut(s) 475
SapI GCTCTTC 1 cut(s) 124
SaqAI TTAA 3 cut(s) 515, 519, 553
SatI GCNGC 7 cut(s) 17, 26, 55, 168, 324, 386, 395
Sau3AI GATC 2 cut(s) 69, 296
Sau96I GGNCC 6 cut(s) 115, 169, 191, 344, 350, 539
SchI GAGTC 1 cut(s) 472
ScrFI CCNGG 6 cut(s) 164, 186, 348, 424, 461, 462
SduI GDGCHC 2 cut(s) 136, 339
SetI ASST 6 cut(s) 112, 144, 246, 255, 308, 387
SfaNI GCATC 1 cut(s) 237
Sfr274I CTCGAG 1 cut(s) 380
Sfr303I CCGCGG 1 cut(s) 395
SgrBI CCGCGG 1 cut(s) 395
SinI GGWCC 5 cut(s) 115, 191, 344, 350, 539
SlaI CTCGAG 1 cut(s) 380
SmaI CCCGGG 1 cut(s) 462
SmiMI CAYNNNNRTG 1 cut(s) 534
SmlI CTYRAG 1 cut(s) 380
SmoI CTYRAG 1 cut(s) 380
Sse9I AATT 1 cut(s) 516
StyD4I CCNGG 6 cut(s) 162, 184, 346, 422, 459, 460
StyI CCWWGG 1 cut(s) 240
TaaI ACNGT 2 cut(s) 474, 512
TaiI ACGT 1 cut(s) 144
TaqI TCGA 2 cut(s) 381, 476
TaqII GACCGA 1 cut(s) 208
TasI AATT 1 cut(s) 516
TauI GCSGC 4 cut(s) 19, 57, 170, 397
TfiI GAWTC 1 cut(s) 503
Tru1I TTAA 3 cut(s) 515, 519, 553
Tru9I TTAA 3 cut(s) 515, 519, 553
TscAI CASTG 1 cut(s) 95
TseI GCWGC 3 cut(s) 25, 323, 385
TspGWI ACGGA 3 cut(s) 289, 445, 507
TspMI CCCGGG 1 cut(s) 460
TspRI CASTG 1 cut(s) 95
VpaK11BI GGWCC 5 cut(s) 115, 191, 344, 350, 539
XhoI CTCGAG 1 cut(s) 380
XmaI CCCGGG 1 cut(s) 460
XmiI GTMKAC 1 cut(s) 476
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.