Rroxscaffold_54G00443410

Encoded by

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000054
OG0000104
Physical Location & Seq
Forward (+)
6964 .. 9311
2348 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_54G00443410.1

Sequence Viewer

Length: 393 bp
ATGGAACAATGTAGGCAAGGGAAGTCGGCAAAATGGATCCGTAACCTCGGGAAAAGGATTGGCTGCGAGGGGGGGCACGGGGGTCCCGATCCGAACCGTCGGCTGTCGGTGAACTGCTCGAGCTGCTTCCGCGGCGAGAGCGGGTCGCCGCGTGCGGCCGGGGGACGGACGGGAACGCTCCTTCGGGGGCTTTCCCGGGCGTTCAACGGTCGACTCGGGCTGGCTTGCCAAGACAATGCGAGGCTAGGCAATGCCATGGCTGCGACGAGAGGCTTGCTAGCGAAGGCTAATGCAATGTCAAGCCAAGGCTTGCCAAGACAATGCCGAGGCTTGCTAGCGAGGCTAATGCAATGCCAAGCCAAGGCTTGCCAAGACAATGCCGAGGCTTGCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

130

Amino Acids

13.71

Weight (kDa)

10.5

Isoelectric Point (pI)

44.34

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000104)

Species Orthologous Gene IDs
pyrus_communis pycom2246g00050 pycom2246g00060 pycom2246g00070 pycom2246g00100 pycom2246g00170 pycom2575g00020 pycom520g01350
rosa_roxburghii Rroxscaffold_102G00450880 Rroxscaffold_102G00450940 Rroxscaffold_103G00450570 Rroxscaffold_104G00444660 Rroxscaffold_104G00444710 Rroxscaffold_104G00444740 Rroxscaffold_104G00444800 Rroxscaffold_104G00444860 Rroxscaffold_105G00447090 Rroxscaffold_105G00447190 Rroxscaffold_105G00447230 Rroxscaffold_106G00451430 Rroxscaffold_107G00442440 Rroxscaffold_107G00442550 Rroxscaffold_107G00442640 Rroxscaffold_107G00442690 Rroxscaffold_111G00451560 Rroxscaffold_112G00451580 Rroxscaffold_113G00451620 Rroxscaffold_115G00451690 Rroxscaffold_118G00451780 Rroxscaffold_122G00451870 Rroxscaffold_123G00451910 Rroxscaffold_124G00451960 Rroxscaffold_128G00452050 Rroxscaffold_12G00450640 Rroxscaffold_131G00452100 Rroxscaffold_132G00452130 Rroxscaffold_138G00452190 Rroxscaffold_13G00448670 Rroxscaffold_14G00441890 Rroxscaffold_14G00441960 Rroxscaffold_14G00442010 Rroxscaffold_14G00442070 Rroxscaffold_15G00447460 Rroxscaffold_15G00447510 Rroxscaffold_15G00447580 Rroxscaffold_162G00450750 Rroxscaffold_17G00435460 Rroxscaffold_17G00435510 Rroxscaffold_17G00435570 Rroxscaffold_17G00435640 Rroxscaffold_17G00435910 Rroxscaffold_18G00446090 Rroxscaffold_18G00446110 Rroxscaffold_18G00446170 Rroxscaffold_19G00448930 Rroxscaffold_1G00000010 Rroxscaffold_1G00000090 Rroxscaffold_1G00000130 Rroxscaffold_20G00445030 Rroxscaffold_20G00445040 Rroxscaffold_20G00445070 Rroxscaffold_20G00445110 Rroxscaffold_21G00439440 Rroxscaffold_21G00439460 Rroxscaffold_21G00439470 Rroxscaffold_21G00439520 Rroxscaffold_21G00439570 Rroxscaffold_21G00439660 Rroxscaffold_22G00439850 Rroxscaffold_22G00439990 Rroxscaffold_22G00440030 Rroxscaffold_25G00450140 Rroxscaffold_25G00450170 Rroxscaffold_26G00447770 Rroxscaffold_27G00446650 Rroxscaffold_29G00441730 Rroxscaffold_29G00441740 Rroxscaffold_29G00441760 Rroxscaffold_29G00441780 Rroxscaffold_29G00441830 Rroxscaffold_29G00441870 Rroxscaffold_30G00449490 Rroxscaffold_30G00449510 Rroxscaffold_31G00438130 Rroxscaffold_31G00438170 Rroxscaffold_31G00438270 Rroxscaffold_32G00442790 Rroxscaffold_32G00442800 Rroxscaffold_32G00442840 Rroxscaffold_33G00439700 Rroxscaffold_33G00439710 Rroxscaffold_34G00443170 Rroxscaffold_34G00443210 Rroxscaffold_34G00443280 Rroxscaffold_34G00443310 Rroxscaffold_35G00441010 Rroxscaffold_35G00441120 Rroxscaffold_35G00441180 Rroxscaffold_35G00441260 Rroxscaffold_35G00441290 Rroxscaffold_36G00440070 Rroxscaffold_36G00440110 Rroxscaffold_36G00440140 Rroxscaffold_36G00440190 Rroxscaffold_37G00445180 Rroxscaffold_37G00445190 Rroxscaffold_37G00445230 Rroxscaffold_37G00445240 Rroxscaffold_37G00445270 Rroxscaffold_38G00444450 Rroxscaffold_38G00444530 Rroxscaffold_38G00444570 Rroxscaffold_38G00444600 Rroxscaffold_38G00444620 Rroxscaffold_39G00448260 Rroxscaffold_40G00447720 Rroxscaffold_43G00449810 Rroxscaffold_43G00449840 Rroxscaffold_43G00449900 Rroxscaffold_44G00440460 Rroxscaffold_44G00440470 Rroxscaffold_44G00440510 Rroxscaffold_44G00440600 Rroxscaffold_44G00440640 Rroxscaffold_45G00438810 Rroxscaffold_45G00438840 Rroxscaffold_45G00438870 Rroxscaffold_45G00438890 Rroxscaffold_45G00438980 Rroxscaffold_46G00448720 Rroxscaffold_46G00448740 Rroxscaffold_47G00443950 Rroxscaffold_47G00443980 Rroxscaffold_47G00444000 Rroxscaffold_47G00444090 Rroxscaffold_48G00448430 Rroxscaffold_48G00448470 Rroxscaffold_48G00448510 Rroxscaffold_49G00438600 Rroxscaffold_49G00438620 Rroxscaffold_49G00438680 Rroxscaffold_49G00438710 Rroxscaffold_49G00438740 Rroxscaffold_49G00438780 Rroxscaffold_50G00444160 Rroxscaffold_50G00444260 Rroxscaffold_50G00444290 Rroxscaffold_50G00444370 Rroxscaffold_50G00444400 Rroxscaffold_53G00449700 Rroxscaffold_53G00449730 Rroxscaffold_53G00449740 Rroxscaffold_54G00443410 Rroxscaffold_54G00443460 Rroxscaffold_54G00443490 Rroxscaffold_54G00443530 Rroxscaffold_54G00443580 Rroxscaffold_54G00443610 Rroxscaffold_54G00443670 Rroxscaffold_55G00450070 Rroxscaffold_55G00450130 Rroxscaffold_56G00450950 Rroxscaffold_58G00449000 Rroxscaffold_58G00449050 Rroxscaffold_59G00442150 Rroxscaffold_59G00442180 Rroxscaffold_59G00442250 Rroxscaffold_59G00442270 Rroxscaffold_59G00442280 Rroxscaffold_60G00448270 Rroxscaffold_60G00448290 Rroxscaffold_60G00448330 Rroxscaffold_60G00448400 Rroxscaffold_61G00449970 Rroxscaffold_62G00437930 Rroxscaffold_62G00438030 Rroxscaffold_64G00450690 Rroxscaffold_64G00450700 Rroxscaffold_65G00445280 Rroxscaffold_65G00445350 Rroxscaffold_65G00445390 Rroxscaffold_66G00437570 Rroxscaffold_66G00437600 Rroxscaffold_66G00437620 Rroxscaffold_66G00437690 Rroxscaffold_66G00437730 Rroxscaffold_66G00437770 Rroxscaffold_66G00437860 Rroxscaffold_68G00447000 Rroxscaffold_68G00447040 Rroxscaffold_69G00446680 Rroxscaffold_69G00446780 Rroxscaffold_69G00446790 Rroxscaffold_69G00446810 Rroxscaffold_6G00387760 Rroxscaffold_6G00387790 Rroxscaffold_6G00387830 Rroxscaffold_6G00387840 Rroxscaffold_70G00446290 Rroxscaffold_70G00446390 Rroxscaffold_71G00445730 Rroxscaffold_71G00445750 Rroxscaffold_72G00449340 Rroxscaffold_72G00449380 Rroxscaffold_73G00439090 Rroxscaffold_73G00439120 Rroxscaffold_73G00439190 Rroxscaffold_73G00439210 Rroxscaffold_73G00439250 Rroxscaffold_74G00442890 Rroxscaffold_74G00442960 Rroxscaffold_75G00447280 Rroxscaffold_75G00447300 Rroxscaffold_75G00447340 Rroxscaffold_75G00447390 Rroxscaffold_75G00447410 Rroxscaffold_75G00447440 Rroxscaffold_76G00448590 Rroxscaffold_78G00449630 Rroxscaffold_78G00449640 Rroxscaffold_79G00450250 Rroxscaffold_80G00450280 Rroxscaffold_80G00450300 Rroxscaffold_80G00450310 Rroxscaffold_81G00450490 Rroxscaffold_82G00450810 Rroxscaffold_86G00451260 Rroxscaffold_87G00451290 Rroxscaffold_87G00451300 Rroxscaffold_87G00451320 Rroxscaffold_88G00451390 Rroxscaffold_90G00448810 Rroxscaffold_91G00442980 Rroxscaffold_91G00443040 Rroxscaffold_92G00446460 Rroxscaffold_92G00446490 Rroxscaffold_92G00446500 Rroxscaffold_92G00446520 Rroxscaffold_92G00446540 Rroxscaffold_92G00446560 Rroxscaffold_93G00440970 Rroxscaffold_93G00440990 Rroxscaffold_94G00445800 Rroxscaffold_94G00445870 Rroxscaffold_94G00445950 Rroxscaffold_94G00445990 Rroxscaffold_95G00449230 Rroxscaffold_95G00449260 Rroxscaffold_95G00449270 Rroxscaffold_96G00449080 Rroxscaffold_97G00442330 Rroxscaffold_97G00442350 Rroxscaffold_97G00442360 Rroxscaffold_98G00451340 Rroxscaffold_99G00451190 Rroxscaffold_99G00451210

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 141
AccI GTMKAC 1 cut(s) 211
AccII CGCG 2 cut(s) 132, 151
AciI CCGC 5 cut(s) 130, 132, 141, 149, 155
AclWI GGATC 3 cut(s) 31, 44, 83
AcoI YGGCCR 1 cut(s) 156
AfiI CCNNNNNNNGG 2 cut(s) 165, 361
AgsI TTSAA 1 cut(s) 205
AluBI AGCT 1 cut(s) 123
AluI AGCT 1 cut(s) 123
AlwI GGATC 3 cut(s) 31, 44, 83
Ama87I CYCGRG 4 cut(s) 47, 118, 195, 215
AoxI GGCC 1 cut(s) 156
ApeKI GCWGC 3 cut(s) 63, 123, 260
AspS9I GGNCC 1 cut(s) 83
AsuC2I CCSGG 3 cut(s) 160, 196, 197
AsuHPI GGTGA 1 cut(s) 121
AsuNHI GCTAGC 2 cut(s) 277, 334
AvaI CYCGRG 4 cut(s) 47, 118, 195, 215
AvaII GGWCC 1 cut(s) 83
BaeGI GKGCMC 1 cut(s) 78
BamHI GGATCC 1 cut(s) 36
BbvI GCAGC 3 cut(s) 50, 110, 247
BcgI CGANNNNNNTGC 4 cut(s) 256, 290, 328, 362
BcnI CCSGG 3 cut(s) 160, 196, 197
BfaI CTAG 4 cut(s) 245, 278, 335, 391
BisI GCNGC 6 cut(s) 64, 124, 133, 149, 156, 261
BlsI GCNGC 6 cut(s) 65, 125, 134, 150, 157, 262
Bme1390I CCNGG 3 cut(s) 160, 196, 197
Bme18I GGWCC 1 cut(s) 83
BmeT110I CYCGRG 4 cut(s) 47, 118, 195, 215
BmgT120I GGNCC 1 cut(s) 83
BmiI GGNNCC 3 cut(s) 38, 84, 85
BmrFI CCNGG 3 cut(s) 160, 196, 197
BmtI GCTAGC 2 cut(s) 281, 338
BpuMI CCSGG 3 cut(s) 160, 196, 197
BsaJI CCNNGG 9 cut(s) 46, 130, 159, 195, 255, 304, 325, 360, 381
Bsc4I CCNNNNNNNGG 2 cut(s) 165, 361
Bse3DI GCAATG 3 cut(s) 256, 300, 356
BseDI CCNNGG 9 cut(s) 46, 130, 159, 195, 255, 304, 325, 360, 381
BseLI CCNNNNNNNGG 2 cut(s) 165, 361
BseMI GCAATG 3 cut(s) 256, 300, 356
BseSI GKGCMC 1 cut(s) 78
BseX3I CGGCCG 1 cut(s) 156
BseXI GCAGC 3 cut(s) 50, 110, 247
Bsh1236I CGCG 2 cut(s) 132, 151
Bsh1285I CGRYCG 2 cut(s) 159, 211
BshFI GGCC 1 cut(s) 158
BsiEI CGRYCG 2 cut(s) 159, 211
BsiHKCI CYCGRG 4 cut(s) 47, 118, 195, 215
BsiSI CCGG 2 cut(s) 159, 196
BslFI GGGAC 2 cut(s) 69, 177
BslI CCNNNNNNNGG 2 cut(s) 165, 361
BsmFI GGGAC 2 cut(s) 69, 177
BsnI GGCC 1 cut(s) 158
BsoBI CYCGRG 4 cut(s) 47, 118, 195, 215
Bsp1286I GDGCHC 1 cut(s) 78
Bsp143I GATC 2 cut(s) 36, 88
Bsp19I CCATGG 1 cut(s) 255
BspACI CCGC 5 cut(s) 130, 132, 141, 149, 155
BspANI GGCC 1 cut(s) 158
BspFNI CGCG 2 cut(s) 132, 151
BspLI GGNNCC 3 cut(s) 38, 84, 85
BspOI GCTAGC 2 cut(s) 281, 338
BspPI GGATC 3 cut(s) 31, 44, 83
BsrBI CCGCTC 1 cut(s) 141
BsrDI GCAATG 3 cut(s) 256, 300, 356
BssECI CCNNGG 9 cut(s) 46, 130, 159, 195, 255, 304, 325, 360, 381
BssMI GATC 2 cut(s) 36, 88
BssT1I CCWWGG 3 cut(s) 255, 304, 360
Bst4CI ACNGT 2 cut(s) 98, 209
BstDSI CCRYGG 2 cut(s) 130, 255
BstFNI CGCG 2 cut(s) 132, 151
BstKTI GATC 2 cut(s) 39, 91
BstMBI GATC 2 cut(s) 36, 88
BstMCI CGRYCG 2 cut(s) 159, 211
BstMWI GCNNNNNNNGC 6 cut(s) 123, 129, 132, 138, 260, 340
BstSCI CCNGG 3 cut(s) 158, 194, 195
BstSLI GKGCMC 1 cut(s) 78
BstUI CGCG 2 cut(s) 132, 151
BstV1I GCAGC 3 cut(s) 50, 110, 247
BstX2I RGATCY 1 cut(s) 36
BstYI RGATCY 1 cut(s) 36
BstZI CGGCCG 1 cut(s) 156
BsuRI GGCC 1 cut(s) 158
BtgI CCRYGG 2 cut(s) 130, 255
Cfr13I GGNCC 1 cut(s) 83
Cfr42I CCGCGG 1 cut(s) 133
Cfr9I CCCGGG 1 cut(s) 195
CviAII CATG 1 cut(s) 256
DpnI GATC 2 cut(s) 38, 90
DpnII GATC 2 cut(s) 36, 88
EaeI YGGCCR 1 cut(s) 156
EagI CGGCCG 1 cut(s) 156
EclXI CGGCCG 1 cut(s) 156
Eco130I CCWWGG 3 cut(s) 255, 304, 360
Eco47I GGWCC 1 cut(s) 83
Eco52I CGGCCG 1 cut(s) 156
Eco88I CYCGRG 4 cut(s) 47, 118, 195, 215
EcoO109I RGGNCCY 1 cut(s) 83
EcoT14I CCWWGG 3 cut(s) 255, 304, 360
ErhI CCWWGG 3 cut(s) 255, 304, 360
FaeI CATG 1 cut(s) 259
FaiI YATR 1 cut(s) 257
FaqI GGGAC 2 cut(s) 69, 177
FatI CATG 1 cut(s) 255
FauI CCCGC 1 cut(s) 134
FblI GTMKAC 1 cut(s) 211
Fnu4HI GCNGC 6 cut(s) 64, 124, 133, 149, 156, 261
Fsp4HI GCNGC 6 cut(s) 64, 124, 133, 149, 156, 261
FspBI CTAG 4 cut(s) 245, 278, 335, 391
GluI GCNGC 6 cut(s) 64, 124, 133, 149, 156, 261
HaeIII GGCC 1 cut(s) 158
HapII CCGG 2 cut(s) 159, 196
Hin1II CATG 1 cut(s) 259
HincII GTYRAC 1 cut(s) 212
HindII GTYRAC 1 cut(s) 212
HinfI GANTC 1 cut(s) 213
HpaII CCGG 2 cut(s) 159, 196
HphI GGTGA 1 cut(s) 121
Hpy166II GTNNAC 2 cut(s) 112, 212
Hpy188I TCNGA 1 cut(s) 93
Hpy188III TCNNGA 2 cut(s) 49, 86
Hpy8I GTNNAC 2 cut(s) 112, 212
Hpy99I CGWCG 2 cut(s) 102, 268
HpyAV CCTTC 2 cut(s) 191, 277
HpyCH4III ACNGT 2 cut(s) 98, 209
HpyCH4V TGCA 2 cut(s) 293, 349
HpyF10VI GCNNNNNNNGC 6 cut(s) 123, 129, 132, 138, 260, 340
Hsp92II CATG 1 cut(s) 259
KflI GGGWCCC 1 cut(s) 83
KspI CCGCGG 1 cut(s) 133
Kzo9I GATC 2 cut(s) 36, 88
LmnI GCTCC 1 cut(s) 183
LpnPI CCDG 3 cut(s) 172, 206, 209
Lsp1109I GCAGC 3 cut(s) 50, 110, 247
MaeI CTAG 4 cut(s) 245, 278, 335, 391
MaeIII GTNAC 1 cut(s) 41
MalI GATC 2 cut(s) 38, 90
MbiI CCGCTC 1 cut(s) 141
MboI GATC 2 cut(s) 36, 88
MflI RGATCY 1 cut(s) 36
MhlI GDGCHC 1 cut(s) 78
MlyI GAGTC 1 cut(s) 207
MnlI CCTC 7 cut(s) 56, 61, 234, 263, 320, 333, 376
MspA1I CMGCKG 1 cut(s) 132
MspI CCGG 2 cut(s) 159, 196
MspR9I CCNGG 3 cut(s) 160, 196, 197
MvnI CGCG 2 cut(s) 132, 151
MwoI GCNNNNNNNGC 6 cut(s) 123, 129, 132, 138, 260, 340
NciI CCSGG 3 cut(s) 160, 196, 197
NcoI CCATGG 1 cut(s) 255
NdeII GATC 2 cut(s) 36, 88
NheI GCTAGC 2 cut(s) 277, 334
NlaIII CATG 1 cut(s) 259
NlaIV GGNNCC 3 cut(s) 38, 84, 85
NmeAIII GCCGAG 1 cut(s) 350
PaeR7I CTCGAG 1 cut(s) 118
PcsI WCGNNNNNNNCGW 1 cut(s) 84
PkrI GCNGC 6 cut(s) 65, 125, 134, 150, 157, 262
PleI GAGTC 1 cut(s) 207
PpsI GAGTC 1 cut(s) 207
PpuMI RGGWCCY 1 cut(s) 83
Psp5II RGGWCCY 1 cut(s) 83
PspN4I GGNNCC 3 cut(s) 38, 84, 85
PspPI GGNCC 1 cut(s) 83
PspPPI RGGWCCY 1 cut(s) 83
PspXI VCTCGAGB 1 cut(s) 118
PsuI RGATCY 1 cut(s) 36
SacII CCGCGG 1 cut(s) 133
SalI GTCGAC 1 cut(s) 210
SatI GCNGC 6 cut(s) 64, 124, 133, 149, 156, 261
Sau3AI GATC 2 cut(s) 36, 88
Sau96I GGNCC 1 cut(s) 83
SchI GAGTC 1 cut(s) 207
ScrFI CCNGG 3 cut(s) 160, 196, 197
SduI GDGCHC 1 cut(s) 78
SetI ASST 2 cut(s) 48, 125
Sfr274I CTCGAG 1 cut(s) 118
Sfr303I CCGCGG 1 cut(s) 133
SgrBI CCGCGG 1 cut(s) 133
SinI GGWCC 1 cut(s) 83
SlaI CTCGAG 1 cut(s) 118
SmaI CCCGGG 1 cut(s) 197
SmlI CTYRAG 1 cut(s) 118
SmoI CTYRAG 1 cut(s) 118
SsiI CCGC 5 cut(s) 130, 132, 141, 149, 155
SspMI CTAG 4 cut(s) 245, 278, 335, 391
StyD4I CCNGG 3 cut(s) 158, 194, 195
StyI CCWWGG 3 cut(s) 255, 304, 360
TaaI ACNGT 2 cut(s) 98, 209
TaqI TCGA 2 cut(s) 119, 211
TauI GCSGC 3 cut(s) 135, 151, 158
TseI GCWGC 3 cut(s) 63, 123, 260
TspGWI ACGGA 2 cut(s) 29, 181
TspMI CCCGGG 1 cut(s) 195
VpaK11BI GGWCC 1 cut(s) 83
XhoI CTCGAG 1 cut(s) 118
XmaI CCCGGG 1 cut(s) 195
XmiI GTMKAC 1 cut(s) 211
XspI CTAG 4 cut(s) 245, 278, 335, 391
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.