Rroxscaffold_95G00449270

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000095
OG0000104
Physical Location & Seq
Reverse (-)
46104 .. 47384
1281 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_95G00449270.1

Sequence Viewer

Length: 342 bp
ATGGTAGGCGCATGCGCCGTCTCGGCGTGCTTCGGCATCTGCGTGCTCCCGCGCGTCTCGCGCGAACTTCGAAAGGGAATCGGGTTAAAATTCCCGAACCGGGACGTGGTGGTTGACGGCAACGTTAGGGAGTCCGAGACGTCGGCGGGGGCCTCGGGAAGAGTTATCTTTTCGTTTAACGACGCCCACCCCGGAAACGGCTCGGCGGAGGTAGGGTCCGGCGGCGGAAGAGCACCGCACGTCGCGTGGTGTCGGTGCGCCCCGGCGGCCCTTGAAAATCCGGAGGACCGAGTGCCATTCACGCCCGGTCGTACTCATAACCGCATCAGGTCTCCAAGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

113

Amino Acids

11.91

Weight (kDa)

9.4

Isoelectric Point (pI)

37.63

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000104)

Species Orthologous Gene IDs
pyrus_communis pycom2246g00050 pycom2246g00060 pycom2246g00070 pycom2246g00100 pycom2246g00170 pycom2575g00020 pycom520g01350
rosa_roxburghii Rroxscaffold_102G00450880 Rroxscaffold_102G00450940 Rroxscaffold_103G00450570 Rroxscaffold_104G00444660 Rroxscaffold_104G00444710 Rroxscaffold_104G00444740 Rroxscaffold_104G00444800 Rroxscaffold_104G00444860 Rroxscaffold_105G00447090 Rroxscaffold_105G00447190 Rroxscaffold_105G00447230 Rroxscaffold_106G00451430 Rroxscaffold_107G00442440 Rroxscaffold_107G00442550 Rroxscaffold_107G00442640 Rroxscaffold_107G00442690 Rroxscaffold_111G00451560 Rroxscaffold_112G00451580 Rroxscaffold_113G00451620 Rroxscaffold_115G00451690 Rroxscaffold_118G00451780 Rroxscaffold_122G00451870 Rroxscaffold_123G00451910 Rroxscaffold_124G00451960 Rroxscaffold_128G00452050 Rroxscaffold_12G00450640 Rroxscaffold_131G00452100 Rroxscaffold_132G00452130 Rroxscaffold_138G00452190 Rroxscaffold_13G00448670 Rroxscaffold_14G00441890 Rroxscaffold_14G00441960 Rroxscaffold_14G00442010 Rroxscaffold_14G00442070 Rroxscaffold_15G00447460 Rroxscaffold_15G00447510 Rroxscaffold_15G00447580 Rroxscaffold_162G00450750 Rroxscaffold_17G00435460 Rroxscaffold_17G00435510 Rroxscaffold_17G00435570 Rroxscaffold_17G00435640 Rroxscaffold_17G00435910 Rroxscaffold_18G00446090 Rroxscaffold_18G00446110 Rroxscaffold_18G00446170 Rroxscaffold_19G00448930 Rroxscaffold_1G00000010 Rroxscaffold_1G00000090 Rroxscaffold_1G00000130 Rroxscaffold_20G00445030 Rroxscaffold_20G00445040 Rroxscaffold_20G00445070 Rroxscaffold_20G00445110 Rroxscaffold_21G00439440 Rroxscaffold_21G00439460 Rroxscaffold_21G00439470 Rroxscaffold_21G00439520 Rroxscaffold_21G00439570 Rroxscaffold_21G00439660 Rroxscaffold_22G00439850 Rroxscaffold_22G00439990 Rroxscaffold_22G00440030 Rroxscaffold_25G00450140 Rroxscaffold_25G00450170 Rroxscaffold_26G00447770 Rroxscaffold_27G00446650 Rroxscaffold_29G00441730 Rroxscaffold_29G00441740 Rroxscaffold_29G00441760 Rroxscaffold_29G00441780 Rroxscaffold_29G00441830 Rroxscaffold_29G00441870 Rroxscaffold_30G00449490 Rroxscaffold_30G00449510 Rroxscaffold_31G00438130 Rroxscaffold_31G00438170 Rroxscaffold_31G00438270 Rroxscaffold_32G00442790 Rroxscaffold_32G00442800 Rroxscaffold_32G00442840 Rroxscaffold_33G00439700 Rroxscaffold_33G00439710 Rroxscaffold_34G00443170 Rroxscaffold_34G00443210 Rroxscaffold_34G00443280 Rroxscaffold_34G00443310 Rroxscaffold_35G00441010 Rroxscaffold_35G00441120 Rroxscaffold_35G00441180 Rroxscaffold_35G00441260 Rroxscaffold_35G00441290 Rroxscaffold_36G00440070 Rroxscaffold_36G00440110 Rroxscaffold_36G00440140 Rroxscaffold_36G00440190 Rroxscaffold_37G00445180 Rroxscaffold_37G00445190 Rroxscaffold_37G00445230 Rroxscaffold_37G00445240 Rroxscaffold_37G00445270 Rroxscaffold_38G00444450 Rroxscaffold_38G00444530 Rroxscaffold_38G00444570 Rroxscaffold_38G00444600 Rroxscaffold_38G00444620 Rroxscaffold_39G00448260 Rroxscaffold_40G00447720 Rroxscaffold_43G00449810 Rroxscaffold_43G00449840 Rroxscaffold_43G00449900 Rroxscaffold_44G00440460 Rroxscaffold_44G00440470 Rroxscaffold_44G00440510 Rroxscaffold_44G00440600 Rroxscaffold_44G00440640 Rroxscaffold_45G00438810 Rroxscaffold_45G00438840 Rroxscaffold_45G00438870 Rroxscaffold_45G00438890 Rroxscaffold_45G00438980 Rroxscaffold_46G00448720 Rroxscaffold_46G00448740 Rroxscaffold_47G00443950 Rroxscaffold_47G00443980 Rroxscaffold_47G00444000 Rroxscaffold_47G00444090 Rroxscaffold_48G00448430 Rroxscaffold_48G00448470 Rroxscaffold_48G00448510 Rroxscaffold_49G00438600 Rroxscaffold_49G00438620 Rroxscaffold_49G00438680 Rroxscaffold_49G00438710 Rroxscaffold_49G00438740 Rroxscaffold_49G00438780 Rroxscaffold_50G00444160 Rroxscaffold_50G00444260 Rroxscaffold_50G00444290 Rroxscaffold_50G00444370 Rroxscaffold_50G00444400 Rroxscaffold_53G00449700 Rroxscaffold_53G00449730 Rroxscaffold_53G00449740 Rroxscaffold_54G00443410 Rroxscaffold_54G00443460 Rroxscaffold_54G00443490 Rroxscaffold_54G00443530 Rroxscaffold_54G00443580 Rroxscaffold_54G00443610 Rroxscaffold_54G00443670 Rroxscaffold_55G00450070 Rroxscaffold_55G00450130 Rroxscaffold_56G00450950 Rroxscaffold_58G00449000 Rroxscaffold_58G00449050 Rroxscaffold_59G00442150 Rroxscaffold_59G00442180 Rroxscaffold_59G00442250 Rroxscaffold_59G00442270 Rroxscaffold_59G00442280 Rroxscaffold_60G00448270 Rroxscaffold_60G00448290 Rroxscaffold_60G00448330 Rroxscaffold_60G00448400 Rroxscaffold_61G00449970 Rroxscaffold_62G00437930 Rroxscaffold_62G00438030 Rroxscaffold_64G00450690 Rroxscaffold_64G00450700 Rroxscaffold_65G00445280 Rroxscaffold_65G00445350 Rroxscaffold_65G00445390 Rroxscaffold_66G00437570 Rroxscaffold_66G00437600 Rroxscaffold_66G00437620 Rroxscaffold_66G00437690 Rroxscaffold_66G00437730 Rroxscaffold_66G00437770 Rroxscaffold_66G00437860 Rroxscaffold_68G00447000 Rroxscaffold_68G00447040 Rroxscaffold_69G00446680 Rroxscaffold_69G00446780 Rroxscaffold_69G00446790 Rroxscaffold_69G00446810 Rroxscaffold_6G00387760 Rroxscaffold_6G00387790 Rroxscaffold_6G00387830 Rroxscaffold_6G00387840 Rroxscaffold_70G00446290 Rroxscaffold_70G00446390 Rroxscaffold_71G00445730 Rroxscaffold_71G00445750 Rroxscaffold_72G00449340 Rroxscaffold_72G00449380 Rroxscaffold_73G00439090 Rroxscaffold_73G00439120 Rroxscaffold_73G00439190 Rroxscaffold_73G00439210 Rroxscaffold_73G00439250 Rroxscaffold_74G00442890 Rroxscaffold_74G00442960 Rroxscaffold_75G00447280 Rroxscaffold_75G00447300 Rroxscaffold_75G00447340 Rroxscaffold_75G00447390 Rroxscaffold_75G00447410 Rroxscaffold_75G00447440 Rroxscaffold_76G00448590 Rroxscaffold_78G00449630 Rroxscaffold_78G00449640 Rroxscaffold_79G00450250 Rroxscaffold_80G00450280 Rroxscaffold_80G00450300 Rroxscaffold_80G00450310 Rroxscaffold_81G00450490 Rroxscaffold_82G00450810 Rroxscaffold_86G00451260 Rroxscaffold_87G00451290 Rroxscaffold_87G00451300 Rroxscaffold_87G00451320 Rroxscaffold_88G00451390 Rroxscaffold_90G00448810 Rroxscaffold_91G00442980 Rroxscaffold_91G00443040 Rroxscaffold_92G00446460 Rroxscaffold_92G00446490 Rroxscaffold_92G00446500 Rroxscaffold_92G00446520 Rroxscaffold_92G00446540 Rroxscaffold_92G00446560 Rroxscaffold_93G00440970 Rroxscaffold_93G00440990 Rroxscaffold_94G00445800 Rroxscaffold_94G00445870 Rroxscaffold_94G00445950 Rroxscaffold_94G00445990 Rroxscaffold_95G00449230 Rroxscaffold_95G00449260 Rroxscaffold_95G00449270 Rroxscaffold_96G00449080 Rroxscaffold_97G00442330 Rroxscaffold_97G00442350 Rroxscaffold_97G00442360 Rroxscaffold_98G00451340 Rroxscaffold_99G00451190 Rroxscaffold_99G00451210

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 143
AccII CGCG 5 cut(s) 52, 54, 61, 63, 245
AccIII TCCGGA 1 cut(s) 280
AciI CCGC 8 cut(s) 50, 146, 206, 222, 225, 236, 266, 322
AclI AACGTT 1 cut(s) 123
AcsI RAATTY 1 cut(s) 89
AcyI GRCGYC 2 cut(s) 140, 183
AfaI GTAC 1 cut(s) 313
AfiI CCNNNNNNNGG 3 cut(s) 100, 106, 197
AgsI TTSAA 1 cut(s) 275
AjiI CACGTC 2 cut(s) 106, 241
Alw21I GWGCWC 2 cut(s) 48, 235
Alw26I GTCTC 4 cut(s) 25, 61, 131, 336
Ama87I CYCGRG 1 cut(s) 154
Aor13HI TCCGGA 1 cut(s) 280
AoxI GGCC 2 cut(s) 150, 267
ApoI RAATTY 1 cut(s) 89
AspLEI GCGC 5 cut(s) 11, 17, 54, 63, 260
AspS9I GGNCC 4 cut(s) 150, 216, 268, 286
AsuC2I CCSGG 4 cut(s) 101, 192, 263, 306
AsuII TTCGAA 1 cut(s) 70
AvaI CYCGRG 1 cut(s) 154
AvaII GGWCC 2 cut(s) 216, 286
Bbv12I GWGCWC 2 cut(s) 48, 235
BceAI ACGGC 3 cut(s) 2, 133, 214
BcnI CCSGG 4 cut(s) 101, 192, 263, 306
BcoDI GTCTC 4 cut(s) 25, 61, 131, 336
BglI GCCNNNNNGGC 2 cut(s) 23, 266
BisI GCNGC 2 cut(s) 223, 267
BlsI GCNGC 2 cut(s) 224, 268
Bme1390I CCNGG 4 cut(s) 101, 192, 263, 306
Bme18I GGWCC 2 cut(s) 216, 286
BmeT110I CYCGRG 1 cut(s) 154
BmgBI CACGTC 2 cut(s) 106, 241
BmgT120I GGNCC 4 cut(s) 150, 216, 268, 286
BmiI GGNNCC 2 cut(s) 151, 217
BmrFI CCNGG 4 cut(s) 101, 192, 263, 306
BmsI GCATC 2 cut(s) 45, 333
Bpu14I TTCGAA 1 cut(s) 70
BpuMI CCSGG 4 cut(s) 101, 192, 263, 306
BsaHI GRCGYC 2 cut(s) 140, 183
BsaI GGTCTC 1 cut(s) 336
BsaJI CCNNGG 4 cut(s) 153, 190, 261, 335
BsaWI WCCGGW 1 cut(s) 280
BsaXI ACNNNNNCTCC 2 cut(s) 200, 230
Bsc4I CCNNNNNNNGG 3 cut(s) 100, 106, 197
BseAI TCCGGA 1 cut(s) 280
BseDI CCNNGG 4 cut(s) 153, 190, 261, 335
BseLI CCNNNNNNNGG 3 cut(s) 100, 106, 197
Bsh1236I CGCG 5 cut(s) 52, 54, 61, 63, 245
Bsh1285I CGRYCG 1 cut(s) 310
BshFI GGCC 2 cut(s) 152, 269
BsiEI CGRYCG 1 cut(s) 310
BsiHKAI GWGCWC 2 cut(s) 48, 235
BsiHKCI CYCGRG 1 cut(s) 154
BsiSI CCGG 6 cut(s) 100, 192, 219, 263, 281, 306
BslFI GGGAC 1 cut(s) 116
BslI CCNNNNNNNGG 3 cut(s) 100, 106, 197
BsmAI GTCTC 4 cut(s) 25, 61, 131, 336
BsmBI CGTCTC 3 cut(s) 25, 61, 131
BsmFI GGGAC 1 cut(s) 116
BsnI GGCC 2 cut(s) 152, 269
Bso31I GGTCTC 1 cut(s) 336
BsoBI CYCGRG 1 cut(s) 154
Bsp119I TTCGAA 1 cut(s) 70
Bsp1286I GDGCHC 2 cut(s) 48, 235
Bsp13I TCCGGA 1 cut(s) 280
BspACI CCGC 8 cut(s) 50, 146, 206, 222, 225, 236, 266, 322
BspANI GGCC 2 cut(s) 152, 269
BspEI TCCGGA 1 cut(s) 280
BspFNI CGCG 5 cut(s) 52, 54, 61, 63, 245
BspLI GGNNCC 2 cut(s) 151, 217
BspQI GCTCTTC 1 cut(s) 223
BspT104I TTCGAA 1 cut(s) 70
BspTNI GGTCTC 1 cut(s) 336
BssECI CCNNGG 4 cut(s) 153, 190, 261, 335
BssNI GRCGYC 2 cut(s) 140, 183
BssT1I CCWWGG 1 cut(s) 335
Bst6I CTCTTC 2 cut(s) 154, 223
BstACI GRCGYC 2 cut(s) 140, 183
BstBI TTCGAA 1 cut(s) 70
BstC8I GCNNGC 3 cut(s) 13, 28, 44
BstFNI CGCG 5 cut(s) 52, 54, 61, 63, 245
BstHHI GCGC 5 cut(s) 11, 17, 54, 63, 260
BstMAI GTCTC 4 cut(s) 25, 61, 131, 336
BstMCI CGRYCG 1 cut(s) 310
BstMWI GCNNNNNNNGC 5 cut(s) 23, 58, 60, 266, 301
BstNSI RCATGY 1 cut(s) 15
BstSCI CCNGG 4 cut(s) 99, 190, 261, 304
BstUI CGCG 5 cut(s) 52, 54, 61, 63, 245
BsuRI GGCC 2 cut(s) 152, 269
BtrI CACGTC 2 cut(s) 106, 241
Cac8I GCNNGC 3 cut(s) 13, 28, 44
CfoI GCGC 5 cut(s) 11, 17, 54, 63, 260
Cfr13I GGNCC 4 cut(s) 150, 216, 268, 286
CseI GACGC 2 cut(s) 43, 191
Csp6I GTAC 1 cut(s) 312
CviAII CATG 1 cut(s) 12
CviJI RGCY 3 cut(s) 152, 201, 269
CviKI_1 RGCY 3 cut(s) 152, 201, 269
CviQI GTAC 1 cut(s) 312
Eam1104I CTCTTC 2 cut(s) 154, 223
EarI CTCTTC 2 cut(s) 154, 223
EciI GGCGGA 2 cut(s) 221, 240
Eco130I CCWWGG 1 cut(s) 335
Eco31I GGTCTC 1 cut(s) 336
Eco47I GGWCC 2 cut(s) 216, 286
Eco88I CYCGRG 1 cut(s) 154
EcoO109I RGGNCCY 1 cut(s) 150
EcoT14I CCWWGG 1 cut(s) 335
ErhI CCWWGG 1 cut(s) 335
Esp3I CGTCTC 3 cut(s) 25, 61, 131
FaeI CATG 1 cut(s) 15
FaiI YATR 2 cut(s) 13, 318
FaqI GGGAC 1 cut(s) 116
FatI CATG 1 cut(s) 11
FauI CCCGC 2 cut(s) 57, 139
Fnu4HI GCNGC 2 cut(s) 223, 267
Fsp4HI GCNGC 2 cut(s) 223, 267
GlaI GCGC 5 cut(s) 10, 16, 53, 62, 259
GluI GCNGC 2 cut(s) 223, 267
HaeIII GGCC 2 cut(s) 152, 269
HapII CCGG 6 cut(s) 100, 192, 219, 263, 281, 306
HgaI GACGC 2 cut(s) 43, 191
HhaI GCGC 5 cut(s) 11, 17, 54, 63, 260
Hin1I GRCGYC 2 cut(s) 140, 183
Hin1II CATG 1 cut(s) 15
Hin6I GCGC 5 cut(s) 9, 15, 52, 61, 258
HinP1I GCGC 5 cut(s) 9, 15, 52, 61, 258
HincII GTYRAC 1 cut(s) 115
HindII GTYRAC 1 cut(s) 115
HinfI GANTC 2 cut(s) 78, 131
HpaII CCGG 6 cut(s) 100, 192, 219, 263, 281, 306
Hpy166II GTNNAC 1 cut(s) 115
Hpy188I TCNGA 1 cut(s) 136
Hpy188III TCNNGA 3 cut(s) 94, 156, 281
Hpy8I GTNNAC 1 cut(s) 115
Hpy99I CGWCG 3 cut(s) 145, 185, 245
HpyCH4IV ACGT 4 cut(s) 105, 123, 140, 240
HpyF10VI GCNNNNNNNGC 5 cut(s) 23, 58, 60, 266, 301
HpySE526I ACGT 4 cut(s) 105, 123, 140, 240
Hsp92I GRCGYC 2 cut(s) 140, 183
Hsp92II CATG 1 cut(s) 15
HspAI GCGC 5 cut(s) 9, 15, 52, 61, 258
Kpn2I TCCGGA 1 cut(s) 280
LguI GCTCTTC 1 cut(s) 223
LmnI GCTCC 1 cut(s) 51
LpnPI CCDG 7 cut(s) 113, 205, 232, 276, 294, 313, 319
LweI GCATC 2 cut(s) 45, 333
MaeII ACGT 4 cut(s) 105, 123, 140, 240
MboII GAAGA 2 cut(s) 171, 240
MhlI GDGCHC 2 cut(s) 48, 235
MluCI AATT 1 cut(s) 89
MlyI GAGTC 1 cut(s) 140
MnlI CCTC 3 cut(s) 163, 202, 277
MroI TCCGGA 1 cut(s) 280
MseI TTAA 2 cut(s) 86, 177
MslI CAYNNNNRTG 1 cut(s) 41
MspI CCGG 6 cut(s) 100, 192, 219, 263, 281, 306
MspR9I CCNGG 4 cut(s) 101, 192, 263, 306
MvnI CGCG 5 cut(s) 52, 54, 61, 63, 245
MwoI GCNNNNNNNGC 5 cut(s) 23, 58, 60, 266, 301
NciI CCSGG 4 cut(s) 101, 192, 263, 306
NlaIII CATG 1 cut(s) 15
NlaIV GGNNCC 2 cut(s) 151, 217
NmeAIII GCCGAG 1 cut(s) 182
NspI RCATGY 1 cut(s) 15
NspV TTCGAA 1 cut(s) 70
PaeI GCATGC 1 cut(s) 15
PciSI GCTCTTC 1 cut(s) 223
PcsI WCGNNNNNNNCGW 1 cut(s) 39
PfeI GAWTC 1 cut(s) 78
PkrI GCNGC 2 cut(s) 224, 268
PleI GAGTC 1 cut(s) 139
PpsI GAGTC 1 cut(s) 139
Psp1406I AACGTT 1 cut(s) 123
PspN4I GGNNCC 2 cut(s) 151, 217
PspPI GGNCC 4 cut(s) 150, 216, 268, 286
RsaI GTAC 1 cut(s) 313
RsaNI GTAC 1 cut(s) 312
RseI CAYNNNNRTG 1 cut(s) 41
SapI GCTCTTC 1 cut(s) 223
SaqAI TTAA 2 cut(s) 86, 177
SatI GCNGC 2 cut(s) 223, 267
Sau96I GGNCC 4 cut(s) 150, 216, 268, 286
SchI GAGTC 1 cut(s) 140
ScrFI CCNGG 4 cut(s) 101, 192, 263, 306
SduI GDGCHC 2 cut(s) 48, 235
SetI ASST 7 cut(s) 108, 126, 143, 213, 243, 332, 341
SfaNI GCATC 2 cut(s) 45, 333
SfuI TTCGAA 1 cut(s) 70
SinI GGWCC 2 cut(s) 216, 286
SmiMI CAYNNNNRTG 1 cut(s) 41
SphI GCATGC 1 cut(s) 15
Sse9I AATT 1 cut(s) 89
SsiI CCGC 8 cut(s) 50, 146, 206, 222, 225, 236, 266, 322
StyD4I CCNGG 4 cut(s) 99, 190, 261, 304
StyI CCWWGG 1 cut(s) 335
TaiI ACGT 4 cut(s) 108, 126, 143, 243
TaqI TCGA 1 cut(s) 70
TaqII GACCGA 1 cut(s) 303
TasI AATT 1 cut(s) 89
TauI GCSGC 2 cut(s) 225, 269
TfiI GAWTC 1 cut(s) 78
Tru1I TTAA 2 cut(s) 86, 177
Tru9I TTAA 2 cut(s) 86, 177
VpaK11BI GGWCC 2 cut(s) 216, 286
XapI RAATTY 1 cut(s) 89
XceI RCATGY 1 cut(s) 15
ZraI GACGTC 1 cut(s) 141
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.