RchiOBHm_Chr1g0346371

Domain of unknown function (DUF4216)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
OG0000178
Physical Location & Seq
Reverse (-)
38625363 .. 38626745
1383 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 624 bp
ATGACTCACTTGCCAATTCACCTAGCATACGAGGCAATACTTGCTGGACCAGTACAATATCGTTGGATGTTCCCATTCGAGAGAAAAATGCATAATTTAAAGGATTATTGTAGAAACAAAGCCCATCCCGAAGGATCAATTGCTGAAGGTTATTGCGACAGTGAATGCCTCACATTTTGTTCTATGTACTTTCACGACATTGAGACAAAATTTAACCAAGGAGACAGGAATCATGACGTGAGTGAGAGAAGAATGGCAGAAATATCTGTTTTCAACCAGAATGTTAGGTTTTTAAAAGGAGCAGTTGATGATATTCTTAGCCTAACTGATTTTGCAATGATTCGATGGTATGTGCTGAACAATTGTGATGAGGTACTCCCATATATAAGGGAGCATAAAGCAGAACTTGAGAGGCAGAATATTACAAACATAGGAAAGGAACAGCAACAAAGATTTCATAAGTGGTTTTTGAGACGTGTTCAACAGATGCAAGTTGAGGGTTCAACTGAACATATCGAATCCTTACTAAACTTGGCCAGTGGACCTCAGCGTGAAGTGACACGGTATAGTGGGTGTGTTGTCAATGGCATAAGGTTTCATACTCAGAAAGGGAATTCAAGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF4216 DUF4218

Protein Analysis

207

Amino Acids

24.33

Weight (kDa)

6.79

Isoelectric Point (pI)

58.09

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF4218 PF13960 1 - 77 7e-33 Domain of unknown function (DUF4218)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000178)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G40087 AT3G30200
fragaria_vesca FvH4_1g23271 FvH4_3g22812 FvH4_3g22813 FvH4_3g31042 FvH4_3g31043 FvH4_7g03653
malus_domestica MD05G1321200.v1.1 MD09G1027200.v1.1 MD15G1434900.v1.1 MD15G1435000.v1.1 MD15G1435100.v1.1
prunus_persica Prupe.1G578800_v2.0.a1 Prupe.1G578800_v2.0.a1 Prupe.1G578800_v2.0.a1 Prupe.2G062700_v2.0.a1 Prupe.5G033400_v2.0.a1 Prupe.7G022900_v2.0.a1 Prupe.7G105300_v2.0.a1 Prupe.7G105300_v2.0.a1 Prupe.7G105300_v2.0.a1 Prupe.7G105300_v2.0.a1 Prupe.7G105300_v2.0.a1 Prupe.7G105300_v2.0.a1 Prupe.7G105300_v2.0.a1
pyrus_communis pycom03g07600 pycom03g11360 pycom05g02870 pycom111g02130 pycom15g38370 pycom15g38380
rosa_chinensis RchiOBHm_Chr1g0346371 RchiOBHm_Chr4g0402051 RchiOBHm_Chr4g0414991 RchiOBHm_Chr5g0051011 RchiOBHm_Chr5g0051181 RchiOBHm_Chr6g0273071 RchiOBHm_Chr7g0218301 RchiOBHm_Chr7g0241081
rosa_laevigata RLG00000007709 RLG00000008953 RLG00000012400 RLG00000012401 RLG00000013805 RLG00000014199 RLG00000014726 RLG00000017792 RLG00000017793 RLG00000018860 RLG00000020749 RLG00000030708 RLG00000033507
rosa_multiflora Rmu_co8373761.1_g000001 Rmu_sc0000028.1_g000023 Rmu_sc0000235.1_g000040 Rmu_sc0000293.1_g000017 Rmu_sc0000293.1_g000019 Rmu_sc0000651.1_g000012 Rmu_sc0000870.1_g000051 Rmu_sc0001167.1_g000031 Rmu_sc0001373.1_g000039 Rmu_sc0001861.1_g000055 Rmu_sc0001891.1_g000038 Rmu_sc0001909.1_g000015 Rmu_sc0002500.1_g000002 Rmu_sc0002868.1_g000036 Rmu_sc0002868.1_g000038 Rmu_sc0002868.1_g000039 Rmu_sc0003379.1_g000001 Rmu_sc0003778.1_g000005 Rmu_sc0003778.1_g000006 Rmu_sc0010475.1_g000011 Rmu_sc0015271.1_g000002 Rmu_sc0015271.1_g000003 Rmu_sc0017962.1_g000001 Rmu_sc0017962.1_g000003 Rmu_sc0022129.1_g000004 Rmu_sc0025694.1_g000003 Rmu_sc0025694.1_g000004
rosa_roxburghii Rroxscaffold_1G00031640 Rroxscaffold_1G00047620 Rroxscaffold_1G00047630 Rroxscaffold_1G00050560 Rroxscaffold_1G00050570 Rroxscaffold_1G00054800 Rroxscaffold_1G00055890 Rroxscaffold_2G00108230 Rroxscaffold_3G00240860 Rroxscaffold_4G00299670 Rroxscaffold_4G00299680 Rroxscaffold_4G00299690 Rroxscaffold_4G00306320 Rroxscaffold_4G00306340 Rroxscaffold_5G00341060 Rroxscaffold_5G00342000 Rroxscaffold_5G00355660 Rroxscaffold_5G00357170 Rroxscaffold_6G00399490 Rroxscaffold_6G00408400 Rroxscaffold_7G00189260 Rroxscaffold_7G00199620 Rroxscaffold_7G00215470
rosa_rugosa Rorug02G0117600 Rorug02G0117700 Rorug04G0116400 Rorug06G0103200
rosa_samantha Rh1AG062800 Rh1AG073700 Rh1CG091700 Rh1DG077600 Rh1DG077700 Rh1DG077800 Rh1DG117400 Rh1DG146300 Rh2BG193300 Rh2BG193400 Rh2BG265300 Rh2BG413400 Rh3CG365500 Rh4AG315400 Rh4BG323100 Rh4BG323200 Rh4CG071400 Rh4CG142500 Rh4CG203300 Rh4CG338300 Rh4DG079300 Rh4DG079400 Rh4DG217000 Rh4DG217100 Rh4DG217200 Rh4DG217300 Rh5AG128300 Rh5AG239900 Rh5AG465900 Rh5BG348600 Rh5BG387900 Rh5BG388000 Rh5CG181800 Rh5CG181900 Rh5CG271000 Rh5CG271100 Rh5DG127100 Rh5DG138400 Rh5DG168200 Rh5DG168300 Rh5DG361500 Rh5DG460400 Rh6AG045400 Rh6AG058600 Rh6BG275000 Rh6CG089700 Rh6DG182300 Rh6DG182400 Rh6DG207300 Rh6DG207400 Rh7BG374000 Rh7BG390600 Rh7BG390700 Rh7BG390800
rosa_wichuraiana Rw0G018690 Rw1G007320 Rw4G008510 Rw5G011510 Rw5G021830 Rw6G024150

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 142
AcoI YGGCCR 1 cut(s) 534
AcsI RAATTY 2 cut(s) 209, 613
AcuI CTGAAG 1 cut(s) 165
AfaI GTAC 3 cut(s) 54, 188, 375
AflIII ACRYGT 1 cut(s) 475
AgsI TTSAA 4 cut(s) 274, 482, 504, 618
AjiI CACGTC 2 cut(s) 238, 476
Alw26I GTCTC 3 cut(s) 197, 216, 466
AlwI GGATC 1 cut(s) 142
AoxI GGCC 1 cut(s) 534
ApoI RAATTY 2 cut(s) 209, 613
AspS9I GGNCC 2 cut(s) 47, 542
AsuHPI GGTGA 1 cut(s) 11
AvaII GGWCC 2 cut(s) 47, 542
BalI TGGCCA 1 cut(s) 536
BbvCI CCTCAGC 1 cut(s) 546
BccI CCATC 2 cut(s) 132, 339
BcoDI GTCTC 3 cut(s) 197, 216, 466
BfaI CTAG 1 cut(s) 23
Bme18I GGWCC 2 cut(s) 47, 542
BmgBI CACGTC 2 cut(s) 238, 476
BmgT120I GGNCC 2 cut(s) 47, 542
BmsI GCATC 1 cut(s) 477
Bpu10I CCTNAGC 1 cut(s) 546
BpuEI CTTGAG 1 cut(s) 428
BsaJI CCNNGG 1 cut(s) 217
Bse1I ACTGG 2 cut(s) 50, 537
Bse3DI GCAATG 1 cut(s) 342
BseDI CCNNGG 1 cut(s) 217
BseGI GGATG 2 cut(s) 72, 124
BseMI GCAATG 1 cut(s) 342
BseMII CTCAG 2 cut(s) 560, 617
BseNI ACTGG 2 cut(s) 50, 537
BshFI GGCC 1 cut(s) 536
BsmAI GTCTC 3 cut(s) 197, 216, 466
BsmBI CGTCTC 1 cut(s) 466
BsmI GAATGC 1 cut(s) 170
BsnI GGCC 1 cut(s) 536
Bsp143I GATC 1 cut(s) 134
BspANI GGCC 1 cut(s) 536
BspCNI CTCAG 2 cut(s) 559, 616
BspHI TCATGA 1 cut(s) 232
BspPI GGATC 1 cut(s) 142
BsrDI GCAATG 1 cut(s) 342
BsrI ACTGG 2 cut(s) 50, 537
BssECI CCNNGG 1 cut(s) 217
BssMI GATC 1 cut(s) 134
BssT1I CCWWGG 1 cut(s) 217
Bst4CI ACNGT 2 cut(s) 161, 564
BstAPI GCANNNNNTGC 1 cut(s) 41
BstDEI CTNAG 3 cut(s) 317, 546, 603
BstF5I GGATG 2 cut(s) 72, 124
BstKTI GATC 1 cut(s) 137
BstMAI GTCTC 3 cut(s) 197, 216, 466
BstMBI GATC 1 cut(s) 134
BstMWI GCNNNNNNNGC 2 cut(s) 32, 41
BsuRI GGCC 1 cut(s) 536
BtrI CACGTC 2 cut(s) 238, 476
BtsCI GGATG 2 cut(s) 72, 124
BtsIMutI CAGTG 2 cut(s) 166, 544
CciI TCATGA 1 cut(s) 232
Cfr13I GGNCC 2 cut(s) 47, 542
Csp6I GTAC 3 cut(s) 53, 187, 374
CviAII CATG 1 cut(s) 233
CviJI RGCY 3 cut(s) 122, 321, 536
CviKI_1 RGCY 3 cut(s) 122, 321, 536
CviQI GTAC 3 cut(s) 53, 187, 374
DdeI CTNAG 3 cut(s) 317, 546, 603
DpnI GATC 1 cut(s) 136
DpnII GATC 1 cut(s) 134
DraI TTTAAA 2 cut(s) 99, 294
EaeI YGGCCR 1 cut(s) 534
Eco130I CCWWGG 1 cut(s) 217
Eco47I GGWCC 2 cut(s) 47, 542
Eco57I CTGAAG 1 cut(s) 165
EcoRI GAATTC 1 cut(s) 613
EcoT14I CCWWGG 1 cut(s) 217
EcoT22I ATGCAT 1 cut(s) 93
ErhI CCWWGG 1 cut(s) 217
Esp3I CGTCTC 1 cut(s) 466
FaeI CATG 1 cut(s) 236
FalI AAGNNNNNCTT 2 cut(s) 390, 422
FatI CATG 1 cut(s) 232
FokI GGATG 2 cut(s) 79, 111
FspBI CTAG 1 cut(s) 23
HaeIII GGCC 1 cut(s) 536
Hin1II CATG 1 cut(s) 236
HinfI GANTC 4 cut(s) 4, 229, 340, 518
HphI GGTGA 1 cut(s) 11
Hpy166II GTNNAC 1 cut(s) 542
Hpy188I TCNGA 1 cut(s) 606
Hpy188III TCNNGA 4 cut(s) 79, 128, 194, 233
Hpy8I GTNNAC 1 cut(s) 542
HpyAV CCTTC 2 cut(s) 125, 140
HpyCH4III ACNGT 2 cut(s) 161, 564
HpyCH4IV ACGT 2 cut(s) 237, 475
HpyCH4V TGCA 3 cut(s) 91, 335, 490
HpyF10VI GCNNNNNNNGC 2 cut(s) 32, 41
HpyF3I CTNAG 3 cut(s) 317, 546, 603
HpySE526I ACGT 2 cut(s) 237, 475
Hsp92II CATG 1 cut(s) 236
Kzo9I GATC 1 cut(s) 134
LmnI GCTCC 2 cut(s) 299, 391
LpnPI CCDG 5 cut(s) 30, 63, 211, 290, 550
LweI GCATC 1 cut(s) 477
MaeI CTAG 1 cut(s) 23
MaeII ACGT 2 cut(s) 237, 475
MaeIII GTNAC 1 cut(s) 556
MalI GATC 1 cut(s) 136
MboI GATC 1 cut(s) 134
MboII GAAGA 1 cut(s) 261
MfeI CAATTG 2 cut(s) 138, 361
MlsI TGGCCA 1 cut(s) 536
MluCI AATT 6 cut(s) 15, 94, 138, 209, 361, 613
MluNI TGGCCA 1 cut(s) 536
MmeI TCCRAC 1 cut(s) 44
MnlI CCTC 6 cut(s) 25, 179, 364, 405, 490, 555
Mox20I TGGCCA 1 cut(s) 536
Mph1103I ATGCAT 1 cut(s) 93
MscI TGGCCA 1 cut(s) 536
MseI TTAA 3 cut(s) 98, 213, 293
Msp20I TGGCCA 1 cut(s) 536
MunI CAATTG 2 cut(s) 138, 361
Mva1269I GAATGC 1 cut(s) 170
MwoI GCNNNNNNNGC 2 cut(s) 32, 41
NdeII GATC 1 cut(s) 134
NlaIII CATG 1 cut(s) 236
NmuCI GTSAC 1 cut(s) 556
NsiI ATGCAT 1 cut(s) 93
PagI TCATGA 1 cut(s) 232
PctI GAATGC 1 cut(s) 170
PfeI GAWTC 3 cut(s) 229, 340, 518
PspPI GGNCC 2 cut(s) 47, 542
RsaI GTAC 3 cut(s) 54, 188, 375
RsaNI GTAC 3 cut(s) 53, 187, 374
SaqAI TTAA 3 cut(s) 98, 213, 293
Sau3AI GATC 1 cut(s) 134
Sau96I GGNCC 2 cut(s) 47, 542
SetI ASST 8 cut(s) 24, 151, 240, 290, 375, 478, 547, 596
SfaNI GCATC 1 cut(s) 477
SinI GGWCC 2 cut(s) 47, 542
SmlI CTYRAG 1 cut(s) 407
SmoI CTYRAG 1 cut(s) 407
Sse9I AATT 6 cut(s) 15, 94, 138, 209, 361, 613
SspI AATATT 1 cut(s) 421
SspMI CTAG 1 cut(s) 23
StyI CCWWGG 1 cut(s) 217
TaaI ACNGT 2 cut(s) 161, 564
TaiI ACGT 2 cut(s) 240, 478
TaqI TCGA 3 cut(s) 78, 343, 516
TasI AATT 6 cut(s) 15, 94, 138, 209, 361, 613
TatI WGTACW 2 cut(s) 52, 186
TfiI GAWTC 3 cut(s) 229, 340, 518
Tru1I TTAA 3 cut(s) 98, 213, 293
Tru9I TTAA 3 cut(s) 98, 213, 293
TscAI CASTG 2 cut(s) 166, 544
TseFI GTSAC 1 cut(s) 556
Tsp45I GTSAC 1 cut(s) 556
TspDTI ATGAA 2 cut(s) 446, 587
TspRI CASTG 2 cut(s) 166, 544
VpaK11BI GGWCC 2 cut(s) 47, 542
XapI RAATTY 2 cut(s) 209, 613
XspI CTAG 1 cut(s) 23
Zsp2I ATGCAT 1 cut(s) 93
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.