RchiOBHm_Chr1g0365731

Protein of unknown function (DUF674)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
OG0000352
Physical Location & Seq
Forward (+)
56562688 .. 56565469
2782 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 798 bp
ATGCTATTTAGATTATCAATTGAAGCAACAAATAATGGACTACGGAAAGCTAAAAGGTCCTTGAAGAGAAGGCTGTTGAACTTGGCATGGATAAGAAAGCTGCTGAAGGACTGCTGTCCTAACAAATGCCTTCCTTGGGAAGAAAGCTGCTGCAAGGAATTTGTGGACTTTCTTTTCACCATTATGTCTTTACCCGTCGGCACTGTCATTAGGCTCCTCAGCAAGGATAGCATGGTTGGTAGCTTAGGCAAGCTTTACGATAGTATCGAAAACATTGGTGACATTTACATGCTACCAGATTGTAACAAAGATACTTTGCTCAAACCAAAAGCGGTTATAGGCAGTGGGGATGCCTCTCTTTTGTTAACCAATGATGAGTCAGTGGAGGAAAAAAAGCTTTTCATGTGTGTGAACTACCACCGGTATGTGGCTGATGACCCTAGAGCCATATGTCCACAGTGTAGAAACCATCTCTCCACCAAAGTGCCTTATGTTGCTCCACAGGCTACTACTGCTGGATCTTCTGGGGGTGGTCATGGATATGTGAAAGATGTTGTGACATACATGATTATGGATAATTTGGAGGTGAAGCCTATGTCTACCATATCTTGTATAACTATGCTCAACAAGTTCAATGTTAAGGAGGTTGGTTCCCTTGAAGAGAAGGTGGTTCATCTAGGCATGGATGAGGGTTTGAAACTGTTGAAGGCATCATTGGAGTCAAATTCTGTTCTCACCAATGTTTTCCTTGGGAAGAAAGAAGCATCTAACATTTCAATGCCCTGCAAGCGATACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF674

Protein Analysis

265

Amino Acids

29.55

Weight (kDa)

8.78

Isoelectric Point (pI)

43.3

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF674 PF05056 50 - 258 1.1e-35 Protein of unknown function (DUF674)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000352)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g24890 FvH4_7g21280 FvH4_7g21300 FvH4_7g21300 FvH4_7g21310 FvH4_7g21330 FvH4_7g21340 FvH4_7g21600 FvH4_7g21610 FvH4_7g21630
malus_domestica MD07G1190400.v1.1 MD07G1190600.v1.1
prunus_persica Prupe.2G228600_v2.0.a1 Prupe.6G198200_v2.0.a1
pyrus_communis pycom07g18010
rosa_chinensis RchiOBHm_Chr1g0365711 RchiOBHm_Chr1g0365721 RchiOBHm_Chr1g0365731 RchiOBHm_Chr1g0365991 RchiOBHm_Chr5g0044511 RchiOBHm_Chr6g0247041 RchiOBHm_Chr6g0247081
rosa_laevigata RLG00000015223 RLG00000027405 RLG00000027406 RLG00000027407 RLG00000027408 RLG00000027409 RLG00000027411 RLG00000027413 RLG00000034277
rosa_multiflora Rmu_co8279495.1_g000001 Rmu_co8358963.1_g000001 Rmu_co8520123.1_g000003 Rmu_sc0002093.1_g000019 Rmu_sc0002093.1_g000024 Rmu_sc0002093.1_g000025 Rmu_sc0002093.1_g000029 Rmu_sc0002476.1_g000002 Rmu_sc0002476.1_g000021 Rmu_sc0003466.1_g000011 Rmu_sc0004288.1_g000006 Rmu_sc0004288.1_g000007 Rmu_sc0004311.1_g000022 Rmu_sc0004311.1_g000023 Rmu_sc0004311.1_g000026 Rmu_sc0004311.1_g000033 Rmu_sc0004577.1_g000008 Rmu_sc0004645.1_g000005 Rmu_sc0004645.1_g000006 Rmu_sc0006406.1_g000011 Rmu_sc0006406.1_g000012 Rmu_sc0009967.1_g000002 Rmu_sc0011598.1_g000003 Rmu_ssc0000151.1_g000015
rosa_roxburghii Rroxscaffold_1G00036500 Rroxscaffold_3G00276050 Rroxscaffold_4G00290950 Rroxscaffold_4G00290960 Rroxscaffold_4G00290970 Rroxscaffold_4G00290980 Rroxscaffold_4G00291000 Rroxscaffold_4G00291030 Rroxscaffold_4G00291060
rosa_rugosa Rorug01G0322900 Rorug01G0323000 Rorug01G0323100 Rorug01G0323200 Rorug01G0323300 Rorug01G0323400 Rorug01G0323500 Rorug01G0323600 Rorug05G0214700 Rorug05G0522100
rosa_samantha Rh1AG332000 Rh1AG332200 Rh1AG332300 Rh1AG334700 Rh1AG334800 Rh1AG335200 Rh1CG309900 Rh1CG310000 Rh1CG310100 Rh1DG325100 Rh1DG325300 Rh1DG325500 Rh5AG299000 Rh5BG306500 Rh5DG315800 Rh6AG037200 Rh6BG031900 Rh6BG032000 Rh6CG032300 Rh6CG032400 Rh6CG033200 Rh6DG030900
rosa_wichuraiana Rw0G001530 Rw1G019070 Rw1G029470 Rw1G029480 Rw1G029490 Rw1G029500 Rw1G029510 Rw1G029700 Rw5G027640 Rw5G027670 Rw6G003160 Rw6G003190

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 599
AciI CCGC 1 cut(s) 332
AclWI GGATC 1 cut(s) 526
AcsI RAATTY 2 cut(s) 158, 724
AcuI CTGAAG 1 cut(s) 125
AfiI CCNNNNNNNGG 3 cut(s) 136, 223, 427
AgeI ACCGGT 1 cut(s) 420
AgsI TTSAA 8 cut(s) 23, 64, 79, 634, 659, 697, 706, 777
AjuI GAANNNNNNNTTGG 2 cut(s) 698, 730
AleI CACNNNNGTG 1 cut(s) 482
AluBI AGCT 6 cut(s) 50, 100, 147, 243, 253, 397
AluI AGCT 6 cut(s) 50, 100, 147, 243, 253, 397
AlwI GGATC 1 cut(s) 526
ApeKI GCWGC 3 cut(s) 100, 147, 150
ApoI RAATTY 2 cut(s) 158, 724
AsiGI ACCGGT 1 cut(s) 420
AspS9I GGNCC 1 cut(s) 57
AsuHPI GGTGA 4 cut(s) 169, 290, 598, 727
AvaII GGWCC 1 cut(s) 57
BaeI ACNNNNGTAYC 2 cut(s) 247, 280
BbvCI CCTCAGC 1 cut(s) 218
BbvI GCAGC 3 cut(s) 87, 134, 137
BccI CCATC 1 cut(s) 477
BfaI CTAG 2 cut(s) 441, 677
BisI GCNGC 3 cut(s) 101, 148, 151
BlsI GCNGC 3 cut(s) 102, 149, 152
Bme18I GGWCC 1 cut(s) 57
BmgT120I GGNCC 1 cut(s) 57
BmiI GGNNCC 2 cut(s) 215, 652
BmsI GCATC 3 cut(s) 340, 719, 773
BoxI GACNNNNGTC 1 cut(s) 114
Bpu10I CCTNAGC 2 cut(s) 218, 244
BsaJI CCNNGG 2 cut(s) 134, 748
BsaWI WCCGGW 1 cut(s) 420
BsaXI ACNNNNNCTCC 2 cut(s) 458, 488
Bsc4I CCNNNNNNNGG 3 cut(s) 136, 223, 427
Bse118I RCCGGY 1 cut(s) 420
BseDI CCNNGG 2 cut(s) 134, 748
BseGI GGATG 2 cut(s) 355, 691
BseLI CCNNNNNNNGG 3 cut(s) 136, 223, 427
BseMII CTCAG 1 cut(s) 232
BseRI GAGGAG 1 cut(s) 206
BseXI GCAGC 3 cut(s) 87, 134, 137
BshTI ACCGGT 1 cut(s) 420
BsiSI CCGG 1 cut(s) 421
BslI CCNNNNNNNGG 3 cut(s) 136, 223, 427
Bsp143I GATC 1 cut(s) 518
BspACI CCGC 1 cut(s) 332
BspCNI CTCAG 1 cut(s) 231
BspLI GGNNCC 2 cut(s) 215, 652
BspPI GGATC 1 cut(s) 526
BsrFI RCCGGY 1 cut(s) 420
BssAI RCCGGY 1 cut(s) 420
BssECI CCNNGG 2 cut(s) 134, 748
BssMI GATC 1 cut(s) 518
BssT1I CCWWGG 2 cut(s) 134, 748
Bst4CI ACNGT 3 cut(s) 205, 459, 702
Bst6I CTCTTC 2 cut(s) 59, 654
BstC8I GCNNGC 2 cut(s) 251, 788
BstDEI CTNAG 2 cut(s) 218, 244
BstENI CCTNNNNNAGG 1 cut(s) 221
BstF5I GGATG 2 cut(s) 355, 691
BstKTI GATC 1 cut(s) 521
BstMBI GATC 1 cut(s) 518
BstMWI GCNNNNNNNGC 4 cut(s) 228, 503, 512, 787
BstNSI RCATGY 1 cut(s) 292
BstPAI GACNNNNGTC 1 cut(s) 114
BstV1I GCAGC 3 cut(s) 87, 134, 137
BstX2I RGATCY 1 cut(s) 518
BstYI RGATCY 1 cut(s) 518
BtsCI GGATG 2 cut(s) 355, 691
BtsI GCAGTG 1 cut(s) 349
BtsIMutI CAGTG 4 cut(s) 201, 349, 387, 464
Cac8I GCNNGC 2 cut(s) 251, 788
Cfr10I RCCGGY 1 cut(s) 420
Cfr13I GGNCC 1 cut(s) 57
CspAI ACCGGT 1 cut(s) 420
CviAII CATG 7 cut(s) 87, 232, 289, 403, 536, 565, 682
DdeI CTNAG 2 cut(s) 218, 244
DpnI GATC 1 cut(s) 520
DpnII GATC 1 cut(s) 518
Eam1104I CTCTTC 2 cut(s) 59, 654
EarI CTCTTC 2 cut(s) 59, 654
Eco130I CCWWGG 2 cut(s) 134, 748
Eco47I GGWCC 1 cut(s) 57
Eco57I CTGAAG 1 cut(s) 125
EcoNI CCTNNNNNAGG 1 cut(s) 221
EcoO109I RGGNCCY 1 cut(s) 57
EcoT14I CCWWGG 2 cut(s) 134, 748
ErhI CCWWGG 2 cut(s) 134, 748
FaeI CATG 7 cut(s) 90, 235, 292, 406, 539, 568, 685
FatI CATG 7 cut(s) 86, 231, 288, 402, 535, 564, 681
FauNDI CATATG 1 cut(s) 449
FblI GTMKAC 1 cut(s) 599
Fnu4HI GCNGC 3 cut(s) 101, 148, 151
FokI GGATG 2 cut(s) 362, 698
Fsp4HI GCNGC 3 cut(s) 101, 148, 151
FspBI CTAG 2 cut(s) 441, 677
GluI GCNGC 3 cut(s) 101, 148, 151
HapII CCGG 1 cut(s) 421
Hin1II CATG 7 cut(s) 90, 235, 292, 406, 539, 568, 685
HincII GTYRAC 1 cut(s) 366
HindII GTYRAC 1 cut(s) 366
HindIII AAGCTT 2 cut(s) 251, 395
HinfI GANTC 2 cut(s) 377, 719
HpaI GTTAAC 1 cut(s) 366
HpaII CCGG 1 cut(s) 421
HphI GGTGA 4 cut(s) 169, 290, 598, 727
Hpy166II GTNNAC 5 cut(s) 166, 366, 412, 455, 600
Hpy8I GTNNAC 5 cut(s) 166, 366, 412, 455, 600
Hpy99I CGWCG 1 cut(s) 200
HpyAV CCTTC 5 cut(s) 63, 100, 140, 658, 700
HpyCH4III ACNGT 3 cut(s) 205, 459, 702
HpyCH4V TGCA 2 cut(s) 153, 786
HpyF10VI GCNNNNNNNGC 4 cut(s) 228, 503, 512, 787
HpyF3I CTNAG 2 cut(s) 218, 244
Hsp92II CATG 7 cut(s) 90, 235, 292, 406, 539, 568, 685
KspAI GTTAAC 1 cut(s) 366
Kzo9I GATC 1 cut(s) 518
LmnI GCTCC 2 cut(s) 219, 502
LpnPI CCDG 5 cut(s) 309, 434, 488, 501, 510
Lsp1109I GCAGC 3 cut(s) 87, 134, 137
LweI GCATC 3 cut(s) 340, 719, 773
MaeI CTAG 2 cut(s) 441, 677
MaeIII GTNAC 3 cut(s) 278, 302, 556
MalI GATC 1 cut(s) 520
MboI GATC 1 cut(s) 518
MboII GAAGA 5 cut(s) 76, 152, 513, 671, 766
MfeI CAATTG 1 cut(s) 18
MflI RGATCY 1 cut(s) 518
MluCI AATT 4 cut(s) 18, 158, 577, 724
MlyI GAGTC 2 cut(s) 386, 728
MnlI CCTC 6 cut(s) 227, 364, 379, 577, 637, 682
MseI TTAA 2 cut(s) 365, 639
MslI CAYNNNNRTG 8 cut(s) 182, 287, 407, 423, 482, 540, 569, 776
MspI CCGG 1 cut(s) 421
MunI CAATTG 1 cut(s) 18
MwoI GCNNNNNNNGC 4 cut(s) 228, 503, 512, 787
NdeI CATATG 1 cut(s) 449
NdeII GATC 1 cut(s) 518
NlaIII CATG 7 cut(s) 90, 235, 292, 406, 539, 568, 685
NlaIV GGNNCC 2 cut(s) 215, 652
NmuCI GTSAC 2 cut(s) 278, 556
NspI RCATGY 1 cut(s) 292
OliI CACNNNNGTG 1 cut(s) 482
PcsI WCGNNNNNNNCGW 1 cut(s) 264
PinAI ACCGGT 1 cut(s) 420
PkrI GCNGC 3 cut(s) 102, 149, 152
PleI GAGTC 2 cut(s) 385, 727
PpsI GAGTC 2 cut(s) 385, 727
PpuMI RGGWCCY 1 cut(s) 57
PshAI GACNNNNGTC 1 cut(s) 114
Psp5II RGGWCCY 1 cut(s) 57
PspN4I GGNNCC 2 cut(s) 215, 652
PspPI GGNCC 1 cut(s) 57
PspPPI RGGWCCY 1 cut(s) 57
PsuI RGATCY 1 cut(s) 518
RseI CAYNNNNRTG 8 cut(s) 182, 287, 407, 423, 482, 540, 569, 776
SaqAI TTAA 2 cut(s) 365, 639
SatI GCNGC 3 cut(s) 101, 148, 151
Sau3AI GATC 1 cut(s) 518
Sau96I GGNCC 1 cut(s) 57
SchI GAGTC 2 cut(s) 386, 728
SfaNI GCATC 3 cut(s) 340, 719, 773
SinI GGWCC 1 cut(s) 57
SmiMI CAYNNNNRTG 8 cut(s) 182, 287, 407, 423, 482, 540, 569, 776
Sse9I AATT 4 cut(s) 18, 158, 577, 724
SsiI CCGC 1 cut(s) 332
SspMI CTAG 2 cut(s) 441, 677
StyI CCWWGG 2 cut(s) 134, 748
TaaI ACNGT 3 cut(s) 205, 459, 702
TaqI TCGA 1 cut(s) 267
TasI AATT 4 cut(s) 18, 158, 577, 724
Tru1I TTAA 2 cut(s) 365, 639
Tru9I TTAA 2 cut(s) 365, 639
TscAI CASTG 4 cut(s) 208, 349, 387, 464
TseFI GTSAC 2 cut(s) 278, 556
TseI GCWGC 3 cut(s) 100, 147, 150
Tsp45I GTSAC 2 cut(s) 278, 556
TspDTI ATGAA 2 cut(s) 391, 662
TspGWI ACGGA 1 cut(s) 58
TspRI CASTG 4 cut(s) 208, 349, 387, 464
VpaK11BI GGWCC 1 cut(s) 57
XagI CCTNNNNNAGG 1 cut(s) 221
XapI RAATTY 2 cut(s) 158, 724
XceI RCATGY 1 cut(s) 292
XmiI GTMKAC 1 cut(s) 599
XspI CTAG 2 cut(s) 441, 677
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.