AT1G58037

BEST Arabidopsis thaliana protein match is Cysteine Histidine-rich C1 domain family protein (TAIR

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0000226
Physical Location & Seq
Reverse (-)
21472554 .. 21474602
2049 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G58037.1

Sequence Viewer

Length: 1032 bp
ATGGACATGTACGAGTACGAAATATCTCGTATACCTAGAGTGAAGATTCCCTGCAGTCATCCGTTAGTTTCCTGGTGGCTGATGCATACTGGAAGTGGAGACCCCCATGAGTATCTTCCATGCGATGGATGTGGTGACACGGAAGGCAACGCCATTTACTGTAAAATCTGCAAATTCCGCGCACATTTCGAATGCATCATCCAGCCAGACATCATCAACCATCCGTGTCACTCCAAACATCCTCTCAAGAAAGTCTTGGCCGAGACAATTGACTATACAGATGGTAACTGTCATTTTTGTCGAAGCCCACTTGATGAGGTGATGTATCATTGTTCCATATGTAATATTAGCATAGATTTAAGCTGTTGGATATATCCCCCACCACTTACTATTTATCAACCAAAGAGCCACAACCATACATTCACCCTCATGGCGAGAAAGGACTCTTTCACTTGTAACGCGTGTGGGTTGGTTGGTGACCGTAATCCTTACGTTTGTCTTGAATGTGATTTCATGCTACACAAAGATTGTATCGATTTGCCCAGAGTCATAAACATAAATCGTCATGACCACCGCATCTCTCGCACTTACCATCTCGGTCAGGGTGATTGGGAATGCGGAGTTTGTCGCAAACAGATAGATTGGACCTTTGGAGGTTACTCTTGCAAGCGTTGTCCTAGTTATGCTGTTCATTCAAAATGTGCAACAAGGGGTGATGTGTGGGAGGGAGAAGAACTAGAAGATGAGCCTGAAGAGGAAGAAATTGAAGATCCATACAAGGTAATCGATGAAAAAGAAATCCTTCATTTCAGTCATGAACATAATCTAAGACTTGGTGATGATAATGCTGCCGACAATGAAAAGTGCCACGCTTGTGTTTTTCCCATCAATTCTGATCCATTCTACCAATGTGTGCAATGCAAGTTTCTCCTTCATAAAGTTTGTGCTACTCTTCCTCGGAAGAAACGAAATATTCTGCACAACCACAAGCTCGATCTACAGATTCAGGGTAAGCCGGGAGAGGTTTTCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
C1_2

Protein Analysis

343

Amino Acids

39.71

Weight (kDa)

5.94

Isoelectric Point (pI)

54.23

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
C1_2 PF03107 75 - 122 8.8e-07 C1 domain
C1_2 PF03107 135 - 178 8.6e-13 C1 domain
C1_2 PF03107 187 - 235 1.6e-11 C1 domain
C1_2 PF03107 270 - 316 3e-11 C1 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000226)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G58037 AT1G58037 AT1G60787 AT1G60787 AT1G60787 AT1G60787 AT1G65180 AT1G69150 AT2G04500 AT2G04680 AT2G19650 AT2G19660 AT2G19660 AT2G21810 AT2G21830 AT2G21830 AT2G21840 AT2G21850 AT2G43220 AT3G06990 AT3G07000 AT3G25850 AT3G27473 AT3G27473 AT3G27473 AT3G27473 AT3G27480 AT3G27480 AT3G27490 AT3G27490 AT3G27500 AT3G27500 AT3G27500 AT3G27510 AT3G27510 AT3G28650 AT3G43890 AT3G45530 AT3G45840 AT3G46800 AT3G46810 AT3G48400 AT4G01350 AT4G01740 AT4G01760 AT4G01910 AT4G01920 AT4G01925 AT4G01930 AT4G02180 AT4G02190 AT4G09690 AT4G11390 AT4G11390 AT4G11540 AT4G11550 AT4G13992 AT4G14980 AT4G16015 AT4G16015 AT5G22355 AT5G26190 AT5G29624 AT5G37620 AT5G39471 AT5G40320 AT5G42840 AT5G42840 AT5G43030 AT5G43040 AT5G44770 AT5G45730 AT5G54020 AT5G54020 AT5G54030 AT5G54040 AT5G54050 AT5G59920 AT5G59930 AT5G59930 AT5G59940
fragaria_vesca FvH4_4g12791 FvH4_6g40980 FvH4_6g41040 FvH4_6g47450 FvH4_7g18770
malus_domestica MD00G1084300.v1.1 MD12G1059900.v1.1 MD14G1057000.v1.1 MD14G1057200.v1.1 MD14G1060000.v1.1 MD14G1060100.v1.1
prunus_persica Prupe.7G074300_v2.0.a1 Prupe.7G074400_v2.0.a1 Prupe.7G074600_v2.0.a1 Prupe.7G074600_v2.0.a1 Prupe.7G078300_v2.0.a1 Prupe.7G078400_v2.0.a1 Prupe.7G078800_v2.0.a1 Prupe.7G081900_v2.0.a1 Prupe.7G092300_v2.0.a1
pyrus_communis pycom14g04870
rosa_chinensis RchiOBHm_Chr1g0362581 RchiOBHm_Chr3g0480191
rosa_laevigata RLG00000023512 RLG00000023513 RLG00000027637
rosa_multiflora Rmu_co8180116.1_g000001 Rmu_co8226133.1_g000001 Rmu_sc0005725.1_g000009 Rmu_sc0006604.1_g000012 Rmu_sc0015624.1_g000001 Rmu_sc0020879.1_g000005 Rmu_sc0020879.1_g000008
rosa_roxburghii Rroxscaffold_4G00293940 Rroxscaffold_6G00401730
rosa_rugosa Rorug01G0299800.1 Rorug03G0180900 Rorug04G0106000 Rorug04G0106100
rosa_samantha Rh1AG308400 Rh1BG271700 Rh1BG271800 Rh1BG272000 Rh1BG272100 Rh1CG289300 Rh1DG302100 Rh1DG302200 Rh1DG302400 Rh1DG302500 Rh3BG264400 Rh3CG262400 Rh3CG262500 Rh3DG258100 Rh3DG258200 Rh3DG258300 Rh3DG273800 Rh4BG170600 Rh7AG404100 Rh7AG404700 Rh7CG422900
rosa_wichuraiana Rw0G000030 Rw1G027380 Rw1G027390 Rw3G020880

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 125
AccI GTMKAC 1 cut(s) 31
AccII CGCG 2 cut(s) 180, 461
AciI CCGC 3 cut(s) 178, 574, 618
AclWI GGATC 2 cut(s) 764, 890
AcoI YGGCCR 1 cut(s) 258
AcsI RAATTY 1 cut(s) 173
AcuI CTGAAG 1 cut(s) 771
AfaI GTAC 2 cut(s) 11, 17
AfiI CCNNNNNNNGG 1 cut(s) 125
AflIII ACRYGT 2 cut(s) 6, 459
AgsI TTSAA 3 cut(s) 503, 696, 767
AjnI CCWGG 1 cut(s) 71
AleI CACNNNNGTG 1 cut(s) 873
AluBI AGCT 2 cut(s) 363, 991
AluI AGCT 2 cut(s) 363, 991
Alw26I GTCTC 2 cut(s) 93, 257
AlwI GGATC 2 cut(s) 764, 890
AoxI GGCC 1 cut(s) 258
ApeKI GCWGC 1 cut(s) 848
ApoI RAATTY 1 cut(s) 173
Asp700I GAANNNNTTC 1 cut(s) 801
AspLEI GCGC 1 cut(s) 182
AspS9I GGNCC 1 cut(s) 645
AsuC2I CCSGG 1 cut(s) 1017
AsuHPI GGTGA 7 cut(s) 146, 331, 415, 488, 617, 725, 848
AsuII TTCGAA 1 cut(s) 189
AvaII GGWCC 1 cut(s) 645
BbvI GCAGC 1 cut(s) 835
BccI CCATC 5 cut(s) 119, 228, 275, 600, 893
BciT130I CCWGG 1 cut(s) 73
BcnI CCSGG 1 cut(s) 1017
BcoDI GTCTC 2 cut(s) 93, 257
BfaI CTAG 4 cut(s) 36, 678, 737, 1030
BfmI CTRYAG 2 cut(s) 52, 998
BisI GCNGC 1 cut(s) 849
BlsI GCNGC 1 cut(s) 850
Bme1390I CCNGG 2 cut(s) 73, 1017
Bme18I GGWCC 1 cut(s) 645
BmgT120I GGNCC 1 cut(s) 645
BmrFI CCNGG 2 cut(s) 73, 1017
BmsI GCATC 3 cut(s) 72, 204, 585
Bpu14I TTCGAA 1 cut(s) 189
BpuEI CTTGAG 1 cut(s) 230
BpuMI CCSGG 1 cut(s) 1017
Bsa29I ATCGAT 2 cut(s) 534, 786
BsaI GGTCTC 1 cut(s) 93
BsaJI CCNNGG 1 cut(s) 956
Bsc4I CCNNNNNNNGG 1 cut(s) 125
Bse1I ACTGG 1 cut(s) 94
Bse3DI GCAATG 1 cut(s) 923
BseBI CCWGG 1 cut(s) 73
BseCI ATCGAT 2 cut(s) 534, 786
BseDI CCNNGG 1 cut(s) 956
BseGI GGATG 5 cut(s) 58, 134, 198, 220, 238
BseLI CCNNNNNNNGG 1 cut(s) 125
BseMI GCAATG 1 cut(s) 923
BseNI ACTGG 1 cut(s) 94
BseXI GCAGC 1 cut(s) 835
BsgI GTGCAG 1 cut(s) 962
Bsh1236I CGCG 2 cut(s) 180, 461
BshFI GGCC 1 cut(s) 260
BshVI ATCGAT 2 cut(s) 534, 786
BsiSI CCGG 1 cut(s) 1016
BslI CCNNNNNNNGG 1 cut(s) 125
BsmAI GTCTC 2 cut(s) 93, 257
BsmI GAATGC 2 cut(s) 197, 620
BsnI GGCC 1 cut(s) 260
Bso31I GGTCTC 1 cut(s) 93
Bsp119I TTCGAA 1 cut(s) 189
Bsp143I GATC 3 cut(s) 769, 895, 994
BspACI CCGC 3 cut(s) 178, 574, 618
BspANI GGCC 1 cut(s) 260
BspDI ATCGAT 2 cut(s) 534, 786
BspFNI CGCG 2 cut(s) 180, 461
BspHI TCATGA 2 cut(s) 565, 814
BspMAI CTGCAG 1 cut(s) 56
BspPI GGATC 2 cut(s) 764, 890
BspT104I TTCGAA 1 cut(s) 189
BspTNI GGTCTC 1 cut(s) 93
BsrDI GCAATG 1 cut(s) 923
BsrI ACTGG 1 cut(s) 94
BssECI CCNNGG 1 cut(s) 956
BssMI GATC 3 cut(s) 769, 895, 994
BssNAI GTATAC 1 cut(s) 32
Bst1107I GTATAC 1 cut(s) 32
Bst2UI CCWGG 1 cut(s) 73
Bst4CI ACNGT 3 cut(s) 161, 290, 482
Bst6I CTCTTC 2 cut(s) 747, 957
BstBI TTCGAA 1 cut(s) 189
BstC8I GCNNGC 1 cut(s) 668
BstDEI CTNAG 1 cut(s) 827
BstEII GGTNACC 1 cut(s) 476
BstF5I GGATG 5 cut(s) 58, 134, 198, 220, 238
BstFNI CGCG 2 cut(s) 180, 461
BstHHI GCGC 1 cut(s) 182
BstKTI GATC 3 cut(s) 772, 898, 997
BstMAI GTCTC 2 cut(s) 93, 257
BstMBI GATC 3 cut(s) 769, 895, 994
BstMWI GCNNNNNNNGC 2 cut(s) 177, 582
BstNI CCWGG 1 cut(s) 73
BstNSI RCATGY 1 cut(s) 10
BstPI GGTNACC 1 cut(s) 476
BstSCI CCNGG 2 cut(s) 71, 1015
BstSFI CTRYAG 2 cut(s) 52, 998
BstUI CGCG 2 cut(s) 180, 461
BstV1I GCAGC 1 cut(s) 835
BstX2I RGATCY 1 cut(s) 769
BstYI RGATCY 1 cut(s) 769
BstZ17I GTATAC 1 cut(s) 32
Bsu15I ATCGAT 2 cut(s) 534, 786
BsuRI GGCC 1 cut(s) 260
BsuTUI ATCGAT 2 cut(s) 534, 786
BtgZI GCGATG 1 cut(s) 138
BtsCI GGATG 5 cut(s) 58, 134, 198, 220, 238
Cac8I GCNNGC 1 cut(s) 668
CciI TCATGA 2 cut(s) 565, 814
CfoI GCGC 1 cut(s) 182
Cfr13I GGNCC 1 cut(s) 645
ClaI ATCGAT 2 cut(s) 534, 786
Csp6I GTAC 2 cut(s) 10, 16
CviAII CATG 7 cut(s) 7, 107, 120, 430, 514, 566, 815
CviJI RGCY 9 cut(s) 79, 205, 260, 306, 363, 408, 748, 991, 1015
CviKI_1 RGCY 9 cut(s) 79, 205, 260, 306, 363, 408, 748, 991, 1015
CviQI GTAC 2 cut(s) 10, 16
DdeI CTNAG 1 cut(s) 827
DpnI GATC 3 cut(s) 771, 897, 996
DpnII GATC 3 cut(s) 769, 895, 994
EaeI YGGCCR 1 cut(s) 258
Eam1104I CTCTTC 2 cut(s) 747, 957
EarI CTCTTC 2 cut(s) 747, 957
Eco31I GGTCTC 1 cut(s) 93
Eco47I GGWCC 1 cut(s) 645
Eco57I CTGAAG 1 cut(s) 771
Eco91I GGTNACC 1 cut(s) 476
EcoO65I GGTNACC 1 cut(s) 476
EcoRII CCWGG 1 cut(s) 71
EcoT22I ATGCAT 2 cut(s) 87, 197
FaeI CATG 7 cut(s) 10, 110, 123, 433, 517, 569, 818
FalI AAGNNNNNCTT 4 cut(s) 239, 271, 786, 818
FatI CATG 7 cut(s) 6, 106, 119, 429, 513, 565, 814
FauNDI CATATG 1 cut(s) 338
FblI GTMKAC 1 cut(s) 31
Fnu4HI GCNGC 1 cut(s) 849
FokI GGATG 5 cut(s) 45, 141, 185, 207, 225
Fsp4HI GCNGC 1 cut(s) 849
FspBI CTAG 4 cut(s) 36, 678, 737, 1030
GlaI GCGC 1 cut(s) 181
GluI GCNGC 1 cut(s) 849
HaeIII GGCC 1 cut(s) 260
HapII CCGG 1 cut(s) 1016
HhaI GCGC 1 cut(s) 182
Hin1II CATG 7 cut(s) 10, 110, 123, 433, 517, 569, 818
Hin6I GCGC 1 cut(s) 180
HinP1I GCGC 1 cut(s) 180
HinfI GANTC 4 cut(s) 46, 443, 546, 1003
HpaII CCGG 1 cut(s) 1016
HphI GGTGA 7 cut(s) 146, 331, 415, 488, 617, 725, 848
Hpy166II GTNNAC 1 cut(s) 32
Hpy188I TCNGA 2 cut(s) 895, 960
Hpy188III TCNNGA 4 cut(s) 247, 500, 566, 815
Hpy8I GTNNAC 1 cut(s) 32
HpyAV CCTTC 3 cut(s) 137, 812, 941
HpyCH4III ACNGT 3 cut(s) 161, 290, 482
HpyCH4IV ACGT 1 cut(s) 492
HpyCH4V TGCA 9 cut(s) 54, 85, 171, 195, 666, 704, 916, 921, 979
HpyF10VI GCNNNNNNNGC 2 cut(s) 177, 582
HpyF3I CTNAG 1 cut(s) 827
HpySE526I ACGT 1 cut(s) 492
Hsp92II CATG 7 cut(s) 10, 110, 123, 433, 517, 569, 818
HspAI GCGC 1 cut(s) 180
Kzo9I GATC 3 cut(s) 769, 895, 994
Lsp1109I GCAGC 1 cut(s) 835
LweI GCATC 3 cut(s) 72, 204, 585
MaeI CTAG 4 cut(s) 36, 678, 737, 1030
MaeII ACGT 1 cut(s) 492
MaeIII GTNAC 6 cut(s) 134, 227, 284, 455, 476, 656
MalI GATC 3 cut(s) 771, 897, 996
MboI GATC 3 cut(s) 769, 895, 994
MboII GAAGA 9 cut(s) 55, 107, 743, 752, 764, 770, 779, 944, 973
MfeI CAATTG 1 cut(s) 267
MflI RGATCY 1 cut(s) 769
MluCI AATT 4 cut(s) 173, 267, 762, 889
MluI ACGCGT 1 cut(s) 459
MlyI GAGTC 2 cut(s) 437, 555
MmeI TCCRAC 1 cut(s) 347
MnlI CCTC 8 cut(s) 252, 310, 437, 647, 718, 748, 966, 1015
Mph1103I ATGCAT 2 cut(s) 87, 197
MroXI GAANNNNTTC 1 cut(s) 801
MseI TTAA 1 cut(s) 359
MslI CAYNNNNRTG 2 cut(s) 428, 873
MspI CCGG 1 cut(s) 1016
MspR9I CCNGG 2 cut(s) 73, 1017
MunI CAATTG 1 cut(s) 267
Mva1269I GAATGC 2 cut(s) 197, 620
MvaI CCWGG 1 cut(s) 73
MvnI CGCG 2 cut(s) 180, 461
MwoI GCNNNNNNNGC 2 cut(s) 177, 582
NciI CCSGG 1 cut(s) 1017
NdeI CATATG 1 cut(s) 338
NdeII GATC 3 cut(s) 769, 895, 994
NlaIII CATG 7 cut(s) 10, 110, 123, 433, 517, 569, 818
NmeAIII GCCGAG 1 cut(s) 286
NmuCI GTSAC 3 cut(s) 134, 227, 476
NsiI ATGCAT 2 cut(s) 87, 197
NspI RCATGY 1 cut(s) 10
NspV TTCGAA 1 cut(s) 189
OliI CACNNNNGTG 1 cut(s) 873
PagI TCATGA 2 cut(s) 565, 814
PciI ACATGT 1 cut(s) 6
PcsI WCGNNNNNNNCGW 1 cut(s) 964
PctI GAATGC 2 cut(s) 197, 620
PdmI GAANNNNTTC 1 cut(s) 801
PfeI GAWTC 2 cut(s) 46, 1003
PflMI CCANNNNNTGG 1 cut(s) 125
PkrI GCNGC 1 cut(s) 850
PleI GAGTC 2 cut(s) 437, 554
PpsI GAGTC 2 cut(s) 437, 554
PscI ACATGT 1 cut(s) 6
Psp6I CCWGG 1 cut(s) 71
PspEI GGTNACC 1 cut(s) 476
PspGI CCWGG 1 cut(s) 71
PspPI GGNCC 1 cut(s) 645
PstI CTGCAG 1 cut(s) 56
PsuI RGATCY 1 cut(s) 769
RsaI GTAC 2 cut(s) 11, 17
RsaNI GTAC 2 cut(s) 10, 16
RseI CAYNNNNRTG 2 cut(s) 428, 873
SaqAI TTAA 1 cut(s) 359
SatI GCNGC 1 cut(s) 849
Sau3AI GATC 3 cut(s) 769, 895, 994
Sau96I GGNCC 1 cut(s) 645
SchI GAGTC 2 cut(s) 437, 555
ScrFI CCNGG 2 cut(s) 73, 1017
SetI ASST 9 cut(s) 37, 321, 365, 495, 650, 658, 783, 993, 1026
SfaNI GCATC 3 cut(s) 72, 204, 585
SfcI CTRYAG 2 cut(s) 52, 998
SfuI TTCGAA 1 cut(s) 189
SinI GGWCC 1 cut(s) 645
SmiMI CAYNNNNRTG 2 cut(s) 428, 873
SmlI CTYRAG 1 cut(s) 245
SmoI CTYRAG 1 cut(s) 245
Sse9I AATT 4 cut(s) 173, 267, 762, 889
SsiI CCGC 3 cut(s) 178, 574, 618
SspI AATATT 2 cut(s) 346, 973
SspMI CTAG 4 cut(s) 36, 678, 737, 1030
StyD4I CCNGG 2 cut(s) 71, 1015
TaaI ACNGT 3 cut(s) 161, 290, 482
TaiI ACGT 1 cut(s) 495
TaqI TCGA 5 cut(s) 189, 301, 534, 786, 993
TaqII GACCGA 1 cut(s) 587
TasI AATT 4 cut(s) 173, 267, 762, 889
TfiI GAWTC 2 cut(s) 46, 1003
Tru1I TTAA 1 cut(s) 359
Tru9I TTAA 1 cut(s) 359
TseFI GTSAC 3 cut(s) 134, 227, 476
TseI GCWGC 1 cut(s) 848
Tsp45I GTSAC 3 cut(s) 134, 227, 476
TspDTI ATGAA 7 cut(s) 502, 680, 794, 804, 831, 873, 923
TspGWI ACGGA 3 cut(s) 51, 155, 213
Van91I CCANNNNNTGG 1 cut(s) 125
VpaK11BI GGWCC 1 cut(s) 645
XapI RAATTY 1 cut(s) 173
XceI RCATGY 1 cut(s) 10
XmiI GTMKAC 1 cut(s) 31
XmnI GAANNNNTTC 1 cut(s) 801
XspI CTAG 4 cut(s) 36, 678, 737, 1030
Zsp2I ATGCAT 2 cut(s) 87, 197
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.