Rh1AG308400

C1 domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1A
OG0000226
Physical Location & Seq
Forward (+)
54227099 .. 54232788
5690 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1AG308400.1

Sequence Viewer

Length: 2499 bp
ATGGATAAGCAGCAGCTTAAACACTTTGGTCACAGGCACCCATTGATGTTGAAGGAACAATATGGCGGTCTACCAGTTTCATGTGAGGCATGTGGCGATGCAGTGCTAGGTCCTCACTACAGTTGCAACCAATGTTTCGACAAATTCATTCTCCATAAGTCATGTGCGCAGCTACCAAGGGAGATGCTTCAGCACCCTTTGCACAGCAAGCACCCACTTAAACTTCGGACGAAGATTCAAAGAGGCAAATGGTTTGAATGTGATGCTTGTCGGGCACGATCCAATGCCTTCTCCTATAGATGTCGCCCATGTGAGTTCCACCTCGACGTCAAATGTGCTTTCAATTTCAGAAACACAGACAGTATAGTACATTTCAGTCACAAGCATGTATTGAGCTTGAGTACTGAAAATCAATCTGAAGAGGGACCACCACTATTGTGTACTGGGTGCTTAGAGCAAGTCCTTGGCCCTAGATACATTTGCGAAATTCCTTTCGAGAGGGAGAGAAGCTGCTCATCCATTGTTCTGCATCAATCTTGTGCGAAGCTATCTCGTGAGATCCAGCACCCGATGCACCGCCAACACGCACTTATTCTCAGTCAAAATGGAGCACGAGAATCCCACTGTGATGCTTGTGGCAAAGATTGCAGCCGCAGATTCAATTACAGTTGTTTCCGATGTGACTTCAACCTCGACCTCAAATGTGCTTCCGAGAAAGGCTTCAAACATTTCAGTCACGAGCATCCATTAATGTTCCAGAAGGGGGGAGGAGACGACAAGAAGAAAGGATATACTGGTCCACTAGTTGTTTGCGATGGGTGCCAGAACCAAATACTTGGCCCTAGTTACACTTGCATCAGTACATATCGCGGTCTTAAATGCTGTTTCAATCTCCACAAGTCATGTGCAGACTTACCCCTTGAGATTCGGCACCCAGTACACCGTCAACATCCGCTTTTTCTTCTCAATACAATTGAGAATATCAGAGTTAAAAAATGCTCATGCAATGCCTGCAATCAACCTTGCAGATACCGCTACAGCTGTTCCATATGCGATTTCAACCTTGACCTCAACTGTGCCTCCAATTGGCAAAAAATTATAGACACTGAATCTCATGAGCATCAGTTTACGGTGATCCCCCGGAAGGAAATGGCCCAGCTCCACCTTATATGTGACGTTTGTGGGGAGTACTACTGGAGTCGCGCTGCCTACTACTTCTGTAGCATCTGCCAGCTCTGGGTCCATAAGGAATGTGCTTCATTTCCACGCGACACCAAAATACCGGAGCACCAACACCGCCTCAAGCTAACCTGGTCCCTTGAAGACATTTACCCCAAGGACCACGTTTGTAAAATCTGCTCTACGAATATTGATAAGTGTCGTACTGTATATTATTGTCAGGAATGTTGCGGATATGTTGCCCACACTACATGCATGGCAGTTGAGTACTTCCAGGAGGAAGCAAACAGAAACAGAACCGTTAGTTTTGAAGATGATGATTATGAGTCTGATGATGCTGCGGAGATCAAACACTTCAGTCATCAACATCGTTTAGTCTCTAAAGATCATCGTCAGGAGGTTAAGGTTGACAGAATAATTTCTTGTCAGGGTTGCATTCGACCCATCACTGAAGACTTCTACAGCTGTACTAAACAAGAAGAAGAATCTTGCCATTTCTATCTCCACAAAACTTGTGCTCGATTGCCAGAAAGGACGCTTCTCCCTTTGCTTCACCAACACCAGTTAATACTCCTCGCTCGGGCGCCTTCTATTGACGGCGTGTTTCAATGTTCTATATGTGGTATCTTTCACCAAGGCTTTGTATACAGTTGTGAGGATCAATGTACTTTGCCAACCGGAAAAAACCCTTTCTACCTTGACCTTGAGTGCAGCATTTATTGGGAGAACAGAGATCTTAAACATGAGTCTCATGCTCACCCCCTCCCCCTCGAAAAAAATTGGGAGGACGTCTGTTGCAGGGGTTGTGGTTCTAAAATATTTTTCTTATTCAGTTGTAAGAGATGCAATTTTCATCTTTGCATAGCCTGTGTTAGATTACCTCTTACTGCTAGGCACCAGTACGACAAGCATCCTCTAAAGCTCACCTATGAAAGTATTGAAGACGAGCTAGGTGAATACTACTGTGAGATATGTGAAGGAAAAAGGAATCCAGCACATTGGTTCTACTGGTGCAAAGAGTGCGAGTTTGACTGTCATCCTCATTGCATTATAGGGAGGTATCCTCAAGTTAAGTTGGGGAACACTTACAAGCACGACGCTCATGTCCAACACCCCGTCACTCTTGTTAGCAAGTGGAAGAGCCCCATTCGAGGCGATAAGAGAGACAACATTCTTCCTTGTAAGAAGTGCGATGAACTCTGCCAAGGATTAGTATTTGAATGCAGAGAGTGCAATATAAATTTCCATCGAGACGGATGTTGTGTAACTACACATTCGGAAACTTCTCTCAGGTCTCCTCAGATCGAAGAGCTAAGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
C1_2 Jacalin

Protein Analysis

832

Amino Acids

96.79

Weight (kDa)

7.53

Isoelectric Point (pI)

48.16

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
C1_2 PF03107 10 - 56 3.5e-08 C1 domain
C1_2 PF03107 66 - 113 4.4e-10 C1 domain
C1_2 PF03107 191 - 236 5.3e-08 C1 domain
C1_2 PF03107 313 - 360 3.7e-08 C1 domain
C1_2 PF03107 429 - 479 1.2e-06 C1 domain
C1_2 PF03107 694 - 743 2.2e-07 C1 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0000226)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G58037 AT1G58037 AT1G60787 AT1G60787 AT1G60787 AT1G60787 AT1G65180 AT1G69150 AT2G04500 AT2G04680 AT2G19650 AT2G19660 AT2G19660 AT2G21810 AT2G21830 AT2G21830 AT2G21840 AT2G21850 AT2G43220 AT3G06990 AT3G07000 AT3G25850 AT3G27473 AT3G27473 AT3G27473 AT3G27473 AT3G27480 AT3G27480 AT3G27490 AT3G27490 AT3G27500 AT3G27500 AT3G27500 AT3G27510 AT3G27510 AT3G28650 AT3G43890 AT3G45530 AT3G45840 AT3G46800 AT3G46810 AT3G48400 AT4G01350 AT4G01740 AT4G01760 AT4G01910 AT4G01920 AT4G01925 AT4G01930 AT4G02180 AT4G02190 AT4G09690 AT4G11390 AT4G11390 AT4G11540 AT4G11550 AT4G13992 AT4G14980 AT4G16015 AT4G16015 AT5G22355 AT5G26190 AT5G29624 AT5G37620 AT5G39471 AT5G40320 AT5G42840 AT5G42840 AT5G43030 AT5G43040 AT5G44770 AT5G45730 AT5G54020 AT5G54020 AT5G54030 AT5G54040 AT5G54050 AT5G59920 AT5G59930 AT5G59930 AT5G59940
fragaria_vesca FvH4_4g12791 FvH4_6g40980 FvH4_6g41040 FvH4_6g47450 FvH4_7g18770
malus_domestica MD00G1084300.v1.1 MD12G1059900.v1.1 MD14G1057000.v1.1 MD14G1057200.v1.1 MD14G1060000.v1.1 MD14G1060100.v1.1
prunus_persica Prupe.7G074300_v2.0.a1 Prupe.7G074400_v2.0.a1 Prupe.7G074600_v2.0.a1 Prupe.7G074600_v2.0.a1 Prupe.7G078300_v2.0.a1 Prupe.7G078400_v2.0.a1 Prupe.7G078800_v2.0.a1 Prupe.7G081900_v2.0.a1 Prupe.7G092300_v2.0.a1
pyrus_communis pycom14g04870
rosa_chinensis RchiOBHm_Chr1g0362581 RchiOBHm_Chr3g0480191
rosa_laevigata RLG00000023512 RLG00000023513 RLG00000027637
rosa_multiflora Rmu_co8180116.1_g000001 Rmu_co8226133.1_g000001 Rmu_sc0005725.1_g000009 Rmu_sc0006604.1_g000012 Rmu_sc0015624.1_g000001 Rmu_sc0020879.1_g000005 Rmu_sc0020879.1_g000008
rosa_roxburghii Rroxscaffold_4G00293940 Rroxscaffold_6G00401730
rosa_rugosa Rorug01G0299800.1 Rorug03G0180900 Rorug04G0106000 Rorug04G0106100
rosa_samantha Rh1AG308400 Rh1BG271700 Rh1BG271800 Rh1BG272000 Rh1BG272100 Rh1CG289300 Rh1DG302100 Rh1DG302200 Rh1DG302400 Rh1DG302500 Rh3BG264400 Rh3CG262400 Rh3CG262500 Rh3DG258100 Rh3DG258200 Rh3DG258300 Rh3DG273800 Rh4BG170600 Rh7AG404100 Rh7AG404700 Rh7CG422900
rosa_wichuraiana Rw0G000030 Rw1G027380 Rw1G027390 Rw3G020880

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 2282
AatII GACGTC 2 cut(s) 330, 1971
Acc16I TGCGCA 1 cut(s) 168
AccB1I GGYRCC 5 cut(s) 36, 819, 930, 1762, 2073
AccI GTMKAC 2 cut(s) 70, 1824
AccII CGCG 3 cut(s) 870, 1203, 1269
AciI CCGC 9 cut(s) 66, 577, 652, 870, 953, 1033, 1297, 1410, 1520
AclWI GGATC 4 cut(s) 273, 553, 1129, 1845
AcsI RAATTY 3 cut(s) 143, 486, 2419
AcuI CTGAAG 4 cut(s) 173, 438, 1519, 1650
AcyI GRCGYC 3 cut(s) 327, 1763, 1968
AfiI CCNNNNNNNGG 6 cut(s) 763, 1086, 1144, 1237, 1759, 2330
AhlI ACTAGT 1 cut(s) 802
AjnI CCWGG 2 cut(s) 1310, 1452
AleI CACNNNNGTG 1 cut(s) 436
Alw21I GWGCWC 3 cut(s) 613, 1290, 1699
Alw26I GTCTC 6 cut(s) 765, 1561, 1932, 2337, 2424, 2478
AlwI GGATC 4 cut(s) 273, 553, 1129, 1845
Ama87I CYCGRG 1 cut(s) 1758
AoxI GGCC 3 cut(s) 466, 838, 1152
ApeKI GCWGC 8 cut(s) 10, 13, 169, 510, 648, 1205, 1517, 1890
ApoI RAATTY 3 cut(s) 143, 486, 2419
AseI ATTAAT 1 cut(s) 749
Asp700I GAANNNNTTC 2 cut(s) 719, 1597
AspLEI GCGC 3 cut(s) 169, 1205, 1765
AspS9I GGNCC 9 cut(s) 110, 425, 467, 797, 839, 1153, 1240, 1314, 1339
AsuC2I CCSGG 1 cut(s) 1141
AsuHPI GGTGA 6 cut(s) 1144, 1724, 1802, 1928, 2095, 2144
AvaI CYCGRG 1 cut(s) 1758
AvaII GGWCC 6 cut(s) 110, 425, 797, 1240, 1314, 1339
BaeGI GKGCMC 1 cut(s) 277
BanI GGYRCC 5 cut(s) 36, 819, 930, 1762, 2073
BanII GRGCYC 1 cut(s) 2324
BauI CACGAG 3 cut(s) 552, 612, 737
BbsI GAAGAC 3 cut(s) 1329, 1638, 2127
Bbv12I GWGCWC 3 cut(s) 613, 1290, 1699
BbvI GCAGC 8 cut(s) 22, 25, 181, 497, 660, 1192, 1504, 1902
BccI CCATC 3 cut(s) 809, 1631, 2433
BceAI ACGGC 1 cut(s) 1792
BciT130I CCWGG 2 cut(s) 1312, 1454
BciVI GTATCC 1 cut(s) 2250
BcnI CCSGG 1 cut(s) 1141
BcoDI GTCTC 6 cut(s) 765, 1561, 1932, 2337, 2424, 2478
BcuI ACTAGT 1 cut(s) 802
BfaI CTAG 6 cut(s) 107, 471, 803, 843, 2070, 2129
BfmI CTRYAG 5 cut(s) 118, 295, 1036, 1219, 1639
BfoI RGCGCY 1 cut(s) 1766
BfuI GTATCC 1 cut(s) 2250
BglII AGATCT 1 cut(s) 1912
BisI GCNGC 9 cut(s) 11, 14, 170, 511, 649, 652, 1206, 1518, 1891
BlsI GCNGC 9 cut(s) 12, 15, 171, 512, 650, 653, 1207, 1519, 1892
BmcAI AGTACT 3 cut(s) 403, 1190, 1448
Bme1390I CCNGG 3 cut(s) 1141, 1312, 1454
Bme18I GGWCC 6 cut(s) 110, 425, 797, 1240, 1314, 1339
BmeT110I CYCGRG 1 cut(s) 1758
BmgT120I GGNCC 9 cut(s) 110, 425, 467, 797, 839, 1153, 1240, 1314, 1339
BmiI GGNNCC 8 cut(s) 38, 426, 821, 932, 1241, 1316, 1764, 2075
BmrFI CCNGG 3 cut(s) 1141, 1312, 1454
BmrI ACTGGG 2 cut(s) 453, 929
BmuI ACTGGG 2 cut(s) 453, 929
BpiI GAAGAC 3 cut(s) 1329, 1638, 2127
BplI GAGNNNNNCTC 2 cut(s) 2227, 2259
BpmI CTGGAG 1 cut(s) 1216
BpuEI CTTGAG 5 cut(s) 418, 941, 1286, 1904, 2229
BpuMI CCSGG 1 cut(s) 1141
BsaHI GRCGYC 3 cut(s) 327, 1763, 1968
BsaI GGTCTC 1 cut(s) 2478
BsaJI CCNNGG 6 cut(s) 176, 463, 1139, 1335, 1813, 2383
BsaWI WCCGGW 2 cut(s) 1282, 1856
BsaXI ACNNNNNCTCC 2 cut(s) 1064, 1094
Bsc4I CCNNNNNNNGG 6 cut(s) 763, 1086, 1144, 1237, 1759, 2330
Bse1I ACTGG 8 cut(s) 74, 448, 799, 935, 1199, 1741, 2077, 2192
Bse3DI GCAATG 2 cut(s) 1012, 2221
BseBI CCWGG 2 cut(s) 1312, 1454
BseDI CCNNGG 6 cut(s) 176, 463, 1139, 1335, 1813, 2383
BseGI GGATG 6 cut(s) 515, 742, 949, 2089, 2215, 2441
BseLI CCNNNNNNNGG 6 cut(s) 763, 1086, 1144, 1237, 1759, 2330
BseMI GCAATG 2 cut(s) 1012, 2221
BseMII CTCAG 3 cut(s) 610, 2482, 2492
BseNI ACTGG 8 cut(s) 74, 448, 799, 935, 1199, 1741, 2077, 2192
BseRI GAGGAG 3 cut(s) 783, 1742, 2466
BseSI GKGCMC 1 cut(s) 277
BseXI GCAGC 8 cut(s) 22, 25, 181, 497, 660, 1192, 1504, 1902
BseYI CCCAGC 1 cut(s) 1155
BsgI GTGCAG 2 cut(s) 927, 1909
Bsh1236I CGCG 3 cut(s) 870, 1203, 1269
BshFI GGCC 3 cut(s) 468, 840, 1154
BshNI GGYRCC 5 cut(s) 36, 819, 930, 1762, 2073
BsiHKAI GWGCWC 3 cut(s) 613, 1290, 1699
BsiHKCI CYCGRG 1 cut(s) 1758
BsiSI CCGG 3 cut(s) 1141, 1283, 1857
BslFI GGGAC 2 cut(s) 438, 1300
BslI CCNNNNNNNGG 6 cut(s) 763, 1086, 1144, 1237, 1759, 2330
BsmAI GTCTC 6 cut(s) 765, 1561, 1932, 2337, 2424, 2478
BsmBI CGTCTC 2 cut(s) 765, 2424
BsmFI GGGAC 2 cut(s) 438, 1300
BsmI GAATGC 2 cut(s) 1614, 2405
BsnI GGCC 3 cut(s) 468, 840, 1154
Bso31I GGTCTC 1 cut(s) 2478
BsoBI CYCGRG 1 cut(s) 1758
Bsp1286I GDGCHC 5 cut(s) 277, 613, 1290, 1699, 2324
Bsp143I GATC 8 cut(s) 278, 558, 1134, 1524, 1564, 1837, 1912, 2481
BspACI CCGC 9 cut(s) 66, 577, 652, 870, 953, 1033, 1297, 1410, 1520
BspANI GGCC 3 cut(s) 468, 840, 1154
BspCNI CTCAG 3 cut(s) 609, 2481, 2491
BspFNI CGCG 3 cut(s) 870, 1203, 1269
BspHI TCATGA 1 cut(s) 1114
BspLI GGNNCC 8 cut(s) 38, 426, 821, 932, 1241, 1316, 1764, 2075
BspPI GGATC 4 cut(s) 273, 553, 1129, 1845
BspQI GCTCTTC 2 cut(s) 2312, 2481
BspT107I GGYRCC 5 cut(s) 36, 819, 930, 1762, 2073
BspTNI GGTCTC 1 cut(s) 2478
BsrDI GCAATG 2 cut(s) 1012, 2221
BsrI ACTGG 8 cut(s) 74, 448, 799, 935, 1199, 1741, 2077, 2192
BssECI CCNNGG 6 cut(s) 176, 463, 1139, 1335, 1813, 2383
BssMI GATC 8 cut(s) 278, 558, 1134, 1524, 1564, 1837, 1912, 2481
BssNAI GTATAC 1 cut(s) 1825
BssNI GRCGYC 3 cut(s) 327, 1763, 1968
BssSI CACGAG 3 cut(s) 552, 612, 737
BssT1I CCWWGG 5 cut(s) 176, 463, 1335, 1813, 2383
Bst1107I GTATAC 1 cut(s) 1825
Bst2BI CACGAG 3 cut(s) 552, 612, 737
Bst2UI CCWGG 2 cut(s) 1312, 1454
Bst6I CTCTTC 3 cut(s) 414, 2312, 2481
BstACI GRCGYC 3 cut(s) 327, 1763, 1968
BstAPI GCANNNNNTGC 6 cut(s) 199, 571, 645, 1011, 2199, 2409
BstC8I GCNNGC 3 cut(s) 209, 1012, 1232
BstDEI CTNAG 5 cut(s) 451, 596, 2468, 2478, 2492
BstF5I GGATG 6 cut(s) 515, 742, 949, 2089, 2215, 2441
BstFNI CGCG 3 cut(s) 870, 1203, 1269
BstH2I RGCGCY 1 cut(s) 1766
BstHHI GCGC 3 cut(s) 169, 1205, 1765
BstKTI GATC 8 cut(s) 281, 561, 1137, 1527, 1567, 1840, 1915, 2484
BstMAI GTCTC 6 cut(s) 765, 1561, 1932, 2337, 2424, 2478
BstMBI GATC 8 cut(s) 278, 558, 1134, 1524, 1564, 1837, 1912, 2481
BstNI CCWGG 2 cut(s) 1312, 1454
BstNSI RCATGY 3 cut(s) 93, 389, 1434
BstSCI CCNGG 3 cut(s) 1139, 1310, 1452
BstSFI CTRYAG 5 cut(s) 118, 295, 1036, 1219, 1639
BstSLI GKGCMC 1 cut(s) 277
BstUI CGCG 3 cut(s) 870, 1203, 1269
BstV1I GCAGC 8 cut(s) 22, 25, 181, 497, 660, 1192, 1504, 1902
BstV2I GAAGAC 3 cut(s) 1329, 1638, 2127
BstX2I RGATCY 2 cut(s) 558, 1912
BstXI CCANNNNNNTGG 2 cut(s) 836, 2178
BstYI RGATCY 2 cut(s) 558, 1912
BstZ17I GTATAC 1 cut(s) 1825
BsuI GTATCC 1 cut(s) 2250
BsuRI GGCC 3 cut(s) 468, 840, 1154
BtgZI GCGATG 3 cut(s) 111, 828, 2385
BtsCI GGATG 6 cut(s) 515, 742, 949, 2089, 2215, 2441
BtsI GCAGTG 1 cut(s) 108
BtsIMutI CAGTG 4 cut(s) 108, 622, 1104, 1626
Cac8I GCNNGC 3 cut(s) 209, 1012, 1232
CciI TCATGA 1 cut(s) 1114
CfoI GCGC 3 cut(s) 169, 1205, 1765
Cfr13I GGNCC 9 cut(s) 110, 425, 467, 797, 839, 1153, 1240, 1314, 1339
CseI GACGC 2 cut(s) 1723, 2285
CsiI ACCWGGT 1 cut(s) 1310
CspCI CAANNNNNGTGG 4 cut(s) 417, 452, 1673, 1708
DdeI CTNAG 5 cut(s) 451, 596, 2468, 2478, 2492
DinI GGCGCC 1 cut(s) 1764
DpnI GATC 8 cut(s) 280, 560, 1136, 1526, 1566, 1839, 1914, 2483
DpnII GATC 8 cut(s) 278, 558, 1134, 1524, 1564, 1837, 1912, 2481
DrdI GACNNNNNNGTC 1 cut(s) 2282
DseDI GACNNNNNNGTC 1 cut(s) 2282
Eam1104I CTCTTC 3 cut(s) 414, 2312, 2481
EarI CTCTTC 3 cut(s) 414, 2312, 2481
Eco130I CCWWGG 5 cut(s) 176, 463, 1335, 1813, 2383
Eco24I GRGCYC 1 cut(s) 2324
Eco31I GGTCTC 1 cut(s) 2478
Eco47I GGWCC 6 cut(s) 110, 425, 797, 1240, 1314, 1339
Eco57I CTGAAG 4 cut(s) 173, 438, 1519, 1650
Eco88I CYCGRG 1 cut(s) 1758
EcoO109I RGGNCCY 1 cut(s) 110
EcoRII CCWGG 2 cut(s) 1310, 1452
EcoT14I CCWWGG 5 cut(s) 176, 463, 1335, 1813, 2383
EcoT22I ATGCAT 1 cut(s) 1436
EcoT38I GRGCYC 1 cut(s) 2324
EgeI GGCGCC 1 cut(s) 1764
EheI GGCGCC 1 cut(s) 1764
ErhI CCWWGG 5 cut(s) 176, 463, 1335, 1813, 2383
Esp3I CGTCTC 2 cut(s) 765, 2424
FaqI GGGAC 2 cut(s) 438, 1300
FauNDI CATATG 1 cut(s) 1049
FblI GTMKAC 2 cut(s) 70, 1824
Fnu4HI GCNGC 9 cut(s) 11, 14, 170, 511, 649, 652, 1206, 1518, 1891
FokI GGATG 6 cut(s) 502, 729, 936, 2076, 2202, 2448
FriOI GRGCYC 1 cut(s) 2324
Fsp4HI GCNGC 9 cut(s) 11, 14, 170, 511, 649, 652, 1206, 1518, 1891
FspBI CTAG 6 cut(s) 107, 471, 803, 843, 2070, 2129
FspI TGCGCA 1 cut(s) 168
GlaI GCGC 3 cut(s) 168, 1204, 1764
GluI GCNGC 9 cut(s) 11, 14, 170, 511, 649, 652, 1206, 1518, 1891
GsaI CCCAGC 1 cut(s) 1159
GsuI CTGGAG 1 cut(s) 1216
HaeII RGCGCY 1 cut(s) 1766
HaeIII GGCC 3 cut(s) 468, 840, 1154
HapII CCGG 3 cut(s) 1141, 1283, 1857
HgaI GACGC 2 cut(s) 1723, 2285
HhaI GCGC 3 cut(s) 169, 1205, 1765
Hin1I GRCGYC 3 cut(s) 327, 1763, 1968
Hin6I GCGC 3 cut(s) 167, 1203, 1763
HinP1I GCGC 3 cut(s) 167, 1203, 1763
HincII GTYRAC 2 cut(s) 947, 1588
HindII GTYRAC 2 cut(s) 947, 1588
HpaII CCGG 3 cut(s) 1141, 1283, 1857
HphI GGTGA 6 cut(s) 1144, 1724, 1802, 1928, 2095, 2144
Hpy166II GTNNAC 8 cut(s) 71, 441, 800, 940, 947, 1128, 1588, 1825
Hpy188I TCNGA 9 cut(s) 228, 350, 418, 677, 712, 986, 1510, 2458, 2481
Hpy188III TCNNGA 8 cut(s) 496, 554, 737, 757, 1115, 1400, 1574, 2429
Hpy8I GTNNAC 8 cut(s) 71, 441, 800, 940, 947, 1128, 1588, 1825
Hpy99I CGWCG 2 cut(s) 329, 2279
HpyAV CCTTC 6 cut(s) 46, 298, 754, 1138, 1776, 2150
HpyCH4IV ACGT 4 cut(s) 327, 1176, 1344, 1968
HpyF3I CTNAG 5 cut(s) 451, 596, 2468, 2478, 2492
HpySE526I ACGT 4 cut(s) 327, 1176, 1344, 1968
Hsp92I GRCGYC 3 cut(s) 327, 1763, 1968
HspAI GCGC 3 cut(s) 167, 1203, 1763
KasI GGCGCC 1 cut(s) 1762
Kzo9I GATC 8 cut(s) 278, 558, 1134, 1524, 1564, 1837, 1912, 2481
LguI GCTCTTC 2 cut(s) 2312, 2481
LmnI GCTCC 3 cut(s) 608, 1164, 1285
Lsp1109I GCAGC 8 cut(s) 22, 25, 181, 497, 660, 1192, 1504, 1902
MabI ACCWGGT 1 cut(s) 1310
MaeI CTAG 6 cut(s) 107, 471, 803, 843, 2070, 2129
MaeII ACGT 4 cut(s) 327, 1176, 1344, 1968
MaeIII GTNAC 8 cut(s) 29, 377, 680, 734, 845, 1172, 2296, 2443
MalI GATC 8 cut(s) 280, 560, 1136, 1526, 1566, 1839, 1914, 2483
MboI GATC 8 cut(s) 278, 558, 1134, 1524, 1564, 1837, 1912, 2481
MfeI CAATTG 2 cut(s) 972, 1084
MflI RGATCY 2 cut(s) 558, 1912
MhlI GDGCHC 5 cut(s) 277, 613, 1290, 1699, 2324
Mly113I GGCGCC 1 cut(s) 1763
MlyI GAGTC 3 cut(s) 1207, 1514, 1934
MmeI TCCRAC 1 cut(s) 2311
Mph1103I ATGCAT 1 cut(s) 1436
MroXI GAANNNNTTC 2 cut(s) 719, 1597
MslI CAYNNNNRTG 3 cut(s) 384, 436, 627
MspA1I CMGCKG 2 cut(s) 1041, 1644
MspI CCGG 3 cut(s) 1141, 1283, 1857
MspR9I CCNGG 3 cut(s) 1141, 1312, 1454
MunI CAATTG 2 cut(s) 972, 1084
Mva1269I GAATGC 2 cut(s) 1614, 2405
MvaI CCWGG 2 cut(s) 1312, 1454
MvnI CGCG 3 cut(s) 870, 1203, 1269
NarI GGCGCC 1 cut(s) 1763
NciI CCSGG 1 cut(s) 1141
NdeI CATATG 1 cut(s) 1049
NdeII GATC 8 cut(s) 278, 558, 1134, 1524, 1564, 1837, 1912, 2481
NlaIV GGNNCC 8 cut(s) 38, 426, 821, 932, 1241, 1316, 1764, 2075
NmuCI GTSAC 6 cut(s) 29, 377, 680, 734, 1172, 2296
NsbI TGCGCA 1 cut(s) 168
NsiI ATGCAT 1 cut(s) 1436
NspI RCATGY 3 cut(s) 93, 389, 1434
OliI CACNNNNGTG 1 cut(s) 436
PagI TCATGA 1 cut(s) 1114
PciSI GCTCTTC 2 cut(s) 2312, 2481
PctI GAATGC 2 cut(s) 1614, 2405
PdmI GAANNNNTTC 2 cut(s) 719, 1597
PfeI GAWTC 7 cut(s) 235, 617, 657, 925, 1109, 1664, 2167
PfoI TCCNGGA 1 cut(s) 1452
PkrI GCNGC 9 cut(s) 12, 15, 171, 512, 650, 653, 1207, 1519, 1892
PleI GAGTC 3 cut(s) 1206, 1513, 1933
PluTI GGCGCC 1 cut(s) 1766
PpsI GAGTC 3 cut(s) 1206, 1513, 1933
PpuMI RGGWCCY 1 cut(s) 110
PshBI ATTAAT 1 cut(s) 749
Psp5II RGGWCCY 1 cut(s) 110
Psp6I CCWGG 2 cut(s) 1310, 1452
PspFI CCCAGC 1 cut(s) 1155
PspGI CCWGG 2 cut(s) 1310, 1452
PspN4I GGNNCC 8 cut(s) 38, 426, 821, 932, 1241, 1316, 1764, 2075
PspPI GGNCC 9 cut(s) 110, 425, 467, 797, 839, 1153, 1240, 1314, 1339
PspPPI RGGWCCY 1 cut(s) 110
PsuI RGATCY 2 cut(s) 558, 1912
PvuII CAGCTG 2 cut(s) 1041, 1644
RseI CAYNNNNRTG 3 cut(s) 384, 436, 627
SapI GCTCTTC 2 cut(s) 2312, 2481
SatI GCNGC 9 cut(s) 11, 14, 170, 511, 649, 652, 1206, 1518, 1891
Sau3AI GATC 8 cut(s) 278, 558, 1134, 1524, 1564, 1837, 1912, 2481
Sau96I GGNCC 9 cut(s) 110, 425, 467, 797, 839, 1153, 1240, 1314, 1339
ScaI AGTACT 3 cut(s) 403, 1190, 1448
SchI GAGTC 3 cut(s) 1207, 1514, 1934
ScrFI CCNGG 3 cut(s) 1141, 1312, 1454
SduI GDGCHC 5 cut(s) 277, 613, 1290, 1699, 2324
SexAI ACCWGGT 1 cut(s) 1310
SfcI CTRYAG 5 cut(s) 118, 295, 1036, 1219, 1639
SfoI GGCGCC 1 cut(s) 1764
SinI GGWCC 6 cut(s) 110, 425, 797, 1240, 1314, 1339
SmiMI CAYNNNNRTG 3 cut(s) 384, 436, 627
SmlI CTYRAG 5 cut(s) 397, 920, 1301, 1883, 2244
SmoI CTYRAG 5 cut(s) 397, 920, 1301, 1883, 2244
SpeI ACTAGT 1 cut(s) 802
SsiI CCGC 9 cut(s) 66, 577, 652, 870, 953, 1033, 1297, 1410, 1520
SspDI GGCGCC 1 cut(s) 1762
SspI AATATT 2 cut(s) 1369, 1998
SspMI CTAG 6 cut(s) 107, 471, 803, 843, 2070, 2129
StyD4I CCNGG 3 cut(s) 1139, 1310, 1452
StyI CCWWGG 5 cut(s) 176, 463, 1335, 1813, 2383
TaiI ACGT 4 cut(s) 330, 1179, 1347, 1971
TatI WGTACW 9 cut(s) 367, 401, 440, 860, 937, 1188, 1446, 1646, 1844
TauI GCSGC 1 cut(s) 654
TfiI GAWTC 7 cut(s) 235, 617, 657, 925, 1109, 1664, 2167
TscAI CASTG 4 cut(s) 108, 629, 1111, 1633
TseFI GTSAC 6 cut(s) 29, 377, 680, 734, 1172, 2296
TseI GCWGC 8 cut(s) 10, 13, 169, 510, 648, 1205, 1517, 1890
Tsp45I GTSAC 6 cut(s) 29, 377, 680, 734, 1172, 2296
TspDTI ATGAA 6 cut(s) 69, 136, 1248, 2021, 2124, 2388
TspGWI ACGGA 1 cut(s) 2448
TspRI CASTG 4 cut(s) 108, 629, 1111, 1633
VpaK11BI GGWCC 6 cut(s) 110, 425, 797, 1240, 1314, 1339
VspI ATTAAT 1 cut(s) 749
XapI RAATTY 3 cut(s) 143, 486, 2419
XceI RCATGY 3 cut(s) 93, 389, 1434
XmiI GTMKAC 2 cut(s) 70, 1824
XmnI GAANNNNTTC 2 cut(s) 719, 1597
XspI CTAG 6 cut(s) 107, 471, 803, 843, 2070, 2129
ZraI GACGTC 2 cut(s) 328, 1969
ZrmI AGTACT 3 cut(s) 403, 1190, 1448
Zsp2I ATGCAT 1 cut(s) 1436
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.